RaMWAS: fast methylome-wide association study pipeline for enrichment platforms. - Shabalin, Andrey A.; Hattab, Mohammad W.; Clark, Shaunna L.; Chan, Robin F.; Kumar, Gaurav; Åberg, Karolina A.; Oord, Edwin J. C. G. van den (Bioinform., 2018)

Reconstruction of a low-rank matrix in the presence of Gaussian noise. - Shabalin, Andrey A.; Nobel, Andrew B. (J. Multivar. Anal., 2013)

seeQTL: a searchable database for human eQTLs. - Xia, Kai; Shabalin, Andrey A.; Huang, Shunping; Madar, Vered; Zhou, Yi-Hui; Wang, Wei; Zou, Fei; Sun, Wei; Sullivan, Patrick F.; Wright, Fred A. (Bioinform., 2012)

Matrix eQTL: ultra fast eQTL analysis via large matrix operations. - Shabalin, Andrey A. (Bioinform., 2012)

Detection of Low Rank Signals in Noise and Fast Correlation Mining with Applications to Large Biological Data. - Shabalin, Andrey A. (2010)

FastMap: Fast eQTL mapping in homozygous populations. - Gatti, Daniel M.; Shabalin, Andrey A.; Lam, Tieu-Chong; Wright, Fred A.; Rusyn, Ivan; Nobel, Andrew B. (Bioinform., 2009)

Merging two gene-expression studies via cross-platform normalization. - Shabalin, Andrey A.; Tjelmeland, Håkon; Fan, Cheng; Perou, Charles M.; Nobel, Andrew B. (Bioinform., 2008)