Virtual monitoring in CF - the importance of continuous monitoring in a multi-organ chronic condition. - Vagg, Tamara; Deasy, Kevin F.; Chapman, Wendy W.; Ranganathan, Sarath C.; Plant, Barry J.; Shanthikumar, Shivanthan (Frontiers Digit. Health, 2023)

Developing a deep learning natural language processing algorithm for automated reporting of adverse drug reactions. - McMaster, Christopher; Chan, Julia; Liew, David F. L.; Su, Elizabeth; Frauman, Albert G.; Chapman, Wendy W.; Pires, Douglas E. V. (J. Biomed. Informatics, 2023)

Analyzing the Spread of Informatics with PubMed. - Chapman, Brian E.; Chapman, Wendy W.; Chapman, Jeremiah (2023)

Adapting an Environmental Scan for 'Insights Reporting': Learnings from an Online Brain Cancer Peer Support Platform. - Burns, Kara; Huckvale, Kit; Borda, Ann; Gilbert, Cecily; Ferdous, Hasan; Kalla, Mahima; Chapman, Wendy W.; Capurro, Daniel (2023)

Automatic Extraction of Skin and Soft Tissue Infection Status from Clinical Notes. - Rhoads, Jamie L. W.; Christensen, Lee M.; Westerdahl, Skylar; Stevens, Vanessa; Chapman, Wendy W.; Conway, Mike (2023)

Designing an Interprofessional Online Course to Foster Learning Health Systems. - Dushyanthen, Sathana; Choo, Dawn; Perrier, Meg; Gray, Kathleen; Capurro, Daniel; Pires, Douglas; Chapman, Brian E.; Hart, Graeme K.; Huckvale, Kit; Chapman, Wendy W.; Lyons, Kayley M. (2023)

A Hybrid Physical-Digital Simulation Laboratory to Expedite Context-Aware Design and Usability Testing in Digital Health. - Huckvale, Kit; Smolenaers, Frank; Ferdous, Hasan; Burns, Kara; Kalla, Mahima; Mani, Mady; Capurro, Daniel; Chapman, Wendy W. (2023)

The Validitron Sandbox: a cloud environment to support prototyping, workflow design and integration testing of data-focused digital health applications. - Huckvale, Kit; Chapman, Wendy W.; Capurro, Daniel (2022)

Design and evaluation of a Women in American Medical Informatics Association (AMIA) leadership program. - Grando, Adela; Ancker, Jessica S.; Tao, Donghua; Howe, Rachael; Coonan, Clare; Johns, Merida L.; Chapman, Wendy W. (J. Am. Medical Informatics Assoc., 2021)

Adaptation of an NLP system to a new healthcare environment to identify social determinants of health. - Reeves, Ruth M.; Christensen, Lee M.; Brown, Jeremiah R.; Conway, Michael; Levis, Maxwell; Gobbel, Glenn T.; Shah, Rashmee U.; Goodrich, Christine; Ricket, Iben; Minter, Freneka F.; Bohm, Andrew; Bray, Bruce E.; et al. (J. Biomed. Informatics, 2021)

Impact of Comorbidity Profiles on Pain Trajectories in Breast Cancer Patients by Using Electronic Health Record Data. - Guo, Jia-Wen; Sward, Katherine A.; Lyons, Ann M.; Beck, Susan L.; Donaldson, Gary W.; Chapman, Wendy W.; Frey, Lewis J. (2021)

Training Women for Leadership in Informatics and Digital Health: A Report from the Inaugural Women in AMIA Leadership Program. - Chapman, Wendy W.; Grando, Adela; Johns, Merida L.; Savova, Guergana; Hightower, Maia (2020)

A Corpus Analysis of Social Isolation from Clinical Notes of Patients with Cancer. - Guo, Jia-Wen; Radloff, Christina L.; Sward, Katherine A.; Beck, Susan L.; Chapman, Wendy W.; Donaldson, Gary W.; Frey, Lewis J. (2020)

Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports. - Trivedi, Gaurav; Dadashzadeh, Esmaeel R.; Handzel, Robert M.; Chapman, Wendy W.; Visweswaran, Shyam; Hochheiser, Harry (Appl. Clin. Inform., 2019)

Moonstone: a novel natural language processing system for inferring social risk from clinical narratives. - Conway, Mike; Keyhani, Salomeh; Christensen, Lee M.; South, Brett R.; Vali, Marzieh; Walter, Louise C.; Mowery, Danielle L.; AbdelRahman, Samir E.; Chapman, Wendy W. (J. Biomed. Semant., 2019)

Health Informatics - Ambitions and Purpose. - Aickelin, Uwe; Chapman, Wendy W.; Hart, Graeme K. (Frontiers Digit. Health, 2019)

Determination of Marital Status of Patients from Structured and Unstructured Electronic Healthcare Data. - Bucher, Brian T.; Shi, Jianlin; Pettit, Robert J.; Ferraro, Jeffrey P.; Chapman, Wendy W.; Gundlapalli, Adi V. (2019)

Researchers' Perspectives on Symptoms related to Cancer Pain: A Network Analysis of Literatures. - Guo, Jia-Wen; Radloff, Christina L.; Beck, Susan L.; Donaldson, Gary W.; Chapman, Wendy W.; Sward, Katherine A.; Frey, Lewis J. (2019)

Extracting Disease Onset from Family History Comments in the Electronic Health Record using Fast Healthcare Interoperability Resources. - Shi, Jianlin; Kawamoto, Kensaku; Kohlmann, Wendy; Mowery, Danielle L.; Bradshaw, Richard L.; Deep, Subhadeep; Chapman, Wendy W.; Fiol, Guilherme Del (2019)

Using Natural Language Processing to improve EHR Structured Data-based Surgical Site Infection Surveillance. - Shi, Jianlin; Liu, Siru; Pruitt, Liese C.; Luppens, Carolyn; Ferraro, Jeffrey P.; Gundlapalli, Adi V.; Chapman, Wendy W.; Bucher, Brian T. (2019)

NLPReViz: an interactive tool for natural language processing on clinical text. - Trivedi, Gaurav; Pham, Phuong; Chapman, Wendy W.; Hwa, Rebecca; Wiebe, Janyce; Hochheiser, Harry (J. Am. Medical Informatics Assoc., 2018)

Using clinical Natural Language Processing for health outcomes research: Overview and actionable suggestions for future advances. - Velupillai, Sumithra; Suominen, Hanna; Liakata, Maria; Roberts, Angus; Shah, Anoop D.; Morley, Katherine; Osborn, David; Hayes, Joseph; Stewart, Robert; Downs, Johnny; Chapman, Wendy W.; Dutta, Rina (J. Biomed. Informatics, 2018)

Natural Language Processing at Scale - Perspectives from Five Healthcare Organizations. - Jacobson, Rebecca Crowley; Chapman, Wendy W.; Liu, Hongfang; Patterson, Olga V.; Zisook, Daniel S. (2018)

Detection of Healthcare-Associated Infections Using Electronic Health Record Data. - Liu, Siru; Ferraro, Jeffrey P.; Gundlapalli, Adi V.; Chapman, Wendy W.; Bucher, Brian T. (2018)

Detecting Current Episodes of Cholecystitis-related Pain from Veterans Affairs Clinical Notes using Natural Language Processing. - Mowery, Danielle L.; Martin, Luke; South, Brett R.; Morrow, Ellen; Peche, William; Wiesner, Eric; Chapman, Wendy W.; Brooke, Benjamin S. (2018)

Annotating Social Determinants of Health and Functional Status Information Using Publicly Accessible Corpora. - Reeves, Ruth M.; South, Brett R.; Gobbel, Glenn T.; Christensen, Lee M.; Thompson, Paul; Chapman, Wendy W.; Matheny, Michael E.; Brown, Jeremiah R. (2018)

An Interactive NLP Tool for Signout Note Preparation. - Trivedi, Gaurav; Handzel, Robert M.; Visweswaran, Shyam; Chapman, Wendy W.; Hochheiser, Harry (2018)

"My work will surely speak for itself: " Visibility, Networking, and Self Promotion in Informatics. - Chapman, Wendy W.; Beene, Murielle S.; Ogunyemi, Omolola; Melton, Genevieve B.; Wiley, Laura K. (2017)

Detecting Evidence of Intra-abdominal Surgical Site Infections from Radiology Reports Using Natural Language Processing. - Chapman, Alec B.; Mowery, Danielle L.; Swords, Douglas S.; Chapman, Wendy W.; Bucher, Brian T. (2017)

A Comparison of Stroke Classifiers Leveraging Hospital Billing Codes versus Natural Language Processing. - Mowery, Danielle L.; Hill, Brent D.; Zhang, Mingyuan; Chapman, Wendy W.; Cannon-Albright, Lisa A.; Majersik, Jennifer (2017)

Towards Automatic Detection of Surgical Site Infections. - Bucher, Brian T.; Mowery, Danielle L.; Castine, Melissa; Chapman, Wendy W. (2017)

Classifying Sentiment of Free-Text Comments in Patient Satisfaction Surveys. - Cary, Elizabeth; Secrest, Aaron M.; Daniels, Chrissy; Chapman, Wendy W.; Conway, Mike; Mowery, Danielle L. (2017)

Developing and Assessing the Complexity of a Knowledge Base for Extracting Indications from Carotid Ultrasounds for the Veterans Health Administration. - Mowery, Danielle L.; Castine, Melissa; Madden, Erin; Keyhani, Salomeh; Chapman, Wendy W. (2017)

Automatic Extraction of Social Determinants of Health from Veterans Affairs Clinical Documents using Natural Language Processing. - South, Brett R.; Christensen, Lee M.; Mowery, Danielle L.; Castine, Melissa; Vali, Marzieh; Carter, Marjorie; Conway, Mike; Gundlapalli, Adi V.; Chapman, Wendy W.; Keyhani, Salomeh (2017)

Extracting Intrauterine Device Usage from Clinical Texts Using Natural Language Processing. - Shi, Jianlin; Mowery, Danielle L.; Zhang, Mingyuan; Sanders, Jessica; Chapman, Wendy W.; Gawron, Lori (2017)

An Interactive Tool for Natural Language Processing on Clinical Text. - Trivedi, Gaurav; Pham, Phuong; Chapman, Wendy W.; Hwa, Rebecca; Wiebe, Janyce; Hochheiser, Harry (CoRR, 2017)

Developing a web-based SKOS editor. - Conway, Mike; Khojoyan, Artem; Fana, Fariba; Scuba, William; Castine, Melissa; Mowery, Danielle L.; Chapman, Wendy W.; Jupp, Simon (J. Biomed. Semant., 2016)

Extracting a stroke phenotype risk factor from Veteran Health Administration clinical reports: an information content analysis. - Mowery, Danielle L.; Chapman, Brian E.; Conway, Mike; South, Brett R.; Madden, Erin; Keyhani, Salomeh; Chapman, Wendy W. (J. Biomed. Semant., 2016)

Knowledge Author: facilitating user-driven, domain content development to support clinical information extraction. - Scuba, William; Tharp, Melissa; Mowery, Danielle L.; Tseytlin, Eugene; Liu, Yang; Drews, Frank A.; Chapman, Wendy W. (J. Biomed. Semant., 2016)

Normalizing acronyms and abbreviations to aid patient understanding of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2. - Mowery, Danielle L.; South, Brett R.; Christensen, Lee M.; Leng, Jianwei; Peltonen, Laura-Maria; Salanterä, Sanna; Suominen, Hanna; Martínez, David; Velupillai, Sumithra; Elhadad, Noémie; Savova, Guergana; Pradhan, Sameer; et al. (J. Biomed. Semant., 2016)

Understanding patient satisfaction with received healthcare services: A natural language processing approach. - Doing-Harris, Kristina; Mowery, Danielle L.; Daniels, Chrissy; Chapman, Wendy W.; Conway, Mike (2016)

VIP: A Framework for Mining Clinical Concepts Using Knowledge Author Ontologies and Apache UIMA. - Ginter, Thomas; Silva, Lalindra De; Patterson, Olga V.; Scuba, William; Chapman, Wendy W.; DuVall, Scott L. (2016)

Women in Informatics Leadership Forum. - Jacobson, Rebecca; Bakken, Suzanne; Chapman, Wendy W.; Florance, Valerie; Tenenbaum, Jessica D. (2016)

A Characterization of Emotional Valence to Support Review of Free-Text Press-Ganey Patient Satisfaction Survey Responses. - Mowery, Danielle L.; Doing-Harris, Kristina M.; Chapman, Wendy W.; Daniels, Chrissy; Conway, Mike (2016)

Event Coreference in Support of Temporal Reasoning in Mental Health Notes. - Reeves, Ruth M.; Verhagen, Marcus; Brandt, Cynthia; Chapman, Wendy W.; Matheny, Michael E.; Brown, Steven H.; Marx, Brian; Speroff, Theodore (2016)

Assessing the Feasibility of an Automated Suggestion System for Communicating Critical Findings from Chest Radiology Reports to Referring Physicians. - Chapman, Brian E.; Mowery, Danielle L.; Narasimhan, Evan; Patel, Neel; Chapman, Wendy W.; Heilbrun, Marta E. (2016)

Evaluating the state of the art in disorder recognition and normalization of the clinical narrative. - Pradhan, Sameer; Elhadad, Noémie; South, Brett R.; Martínez, David; Christensen, Lee M.; Vogel, Amy; Suominen, Hanna; Chapman, Wendy W.; Savova, Guergana (J. Am. Medical Informatics Assoc., 2015)

RapTAT: A Tool for Assisted Annotation and Reviewer Training via Online Machine Learning. - Gobbel, Glenn T.; Reeves, Ruth M.; South, Brett R.; Chapman, Wendy W.; Jarman, Jay; Lay, Steven; Matheny, Michael E. (2015)

Developing Natural Language Processing Systems for Healthcare. - Reeves, Ruth M.; Chapman, Wendy W.; Finch, Dezon; Garvin, Jennifer H.; Gobbel, Glenn T. (2015)

Annotating ADLs and IADLs in Veterans Affairs Clinical Documents. - South, Brett R.; Mowery, Danielle L.; Christensen, Lee M.; Gundlapalli, Adi V.; Tharp, Melissa; Vali, Marzieh; Carter, Marjorie E.; Conway, Mike; Keyhani, Salomeh; Chapman, Wendy W. (2015)

Towards a Generalizable Time Expression Model for Temporal Reasoning in Clinical Notes. - Velupillai, Sumithra; Mowery, Danielle L.; AbdelRahman, Samir E.; Christensen, Lee M.; Chapman, Wendy W. (2015)

SemEval-2015 Task 14: Analysis of Clinical Text. - Elhadad, Noémie; Pradhan, Sameer; Gorman, Sharon Lipsky; Manandhar, Suresh; Chapman, Wendy W.; Savova, Guergana K. (2015)

BluLab: Temporal Information Extraction for the 2015 Clinical TempEval Challenge. - Velupillai, Sumithra; Mowery, Danielle L.; AbdelRahman, Samir E.; Christensen, Lee M.; Chapman, Wendy W. (2015)

Cue-based assertion classification for Swedish clinical text - Developing a lexicon for pyConTextSwe. - Velupillai, Sumithra; Skeppstedt, Maria; Kvist, Maria; Mowery, Danielle L.; Chapman, Brian E.; Dalianis, Hercules; Chapman, Wendy W. (Artif. Intell. Medicine, 2014)

Evaluating the effects of machine pre-annotation and an interactive annotation interface on manual de-identification of clinical text. - South, Brett R.; Mowery, Danielle L.; Suo, Ying; Leng, Jianwei; Ferrández, Óscar; Meystre, Stéphane M.; Chapman, Wendy W. (J. Biomed. Informatics, 2014)

Developing a Knowledge Base for Detecting Carotid Stenosis with pyConText. - Mowery, Danielle L.; Franc, Daniel; Ashfaq, Shazia; Cheng, Eric; Zamora, Tania; Chapman, Wendy W.; Chapman, Brian E. (2014)

A System Usability Study Assessing a Machine-Assisted Interactive Interface to Support Annotation of Protected Health Information in Clinical Texts. - South, Brett R.; Mowery, Danielle L.; Leng, Chris; Meystre, Stéphane M.; Chapman, Wendy W. (2014)

Disease/Disorder Semantic Template Filling - Information Extraction Challenge in the ShARe/CLEF eHealth Evaluation Lab 2014. - Velupillai, Sumithra; Mowery, Danielle L.; Christensen, Lee M.; Elhadad, Noemie; Pradhan, Sameer; Savova, Guergana K.; Chapman, Wendy W. (2014)

Generating Patient Problem Lists from the ShARe Corpus using SNOMED CT/SNOMED CT CORE Problem List. - Mowery, Danielle L.; Ross, Mindy K.; Velupillai, Sumithra; Meystre, Stéphane M.; Wiebe, Janyce; Chapman, Wendy W. (2014)

Task 2: ShARe/CLEF eHealth Evaluation Lab 2014. - Mowery, Danielle L.; Velupillai, Sumithra; South, Brett R.; Christensen, Lee M.; Martínez, David; Kelly, Liadh; Goeuriot, Lorraine; Elhadad, Noémie; Pradhan, Sameer; Savova, Guergana K.; Chapman, Wendy W. (2014)

Overview of the ShARe/CLEF eHealth Evaluation Lab 2014. - Kelly, Liadh; Goeuriot, Lorraine; Suominen, Hanna; Schreck, Tobias; Leroy, Gondy; Mowery, Danielle L.; Velupillai, Sumithra; Chapman, Wendy W.; Martínez, David; Zuccon, Guido; Palotti, João R. M. (2014)

SemEval-2014 Task 7: Analysis of Clinical Text. - Pradhan, Sameer; Elhadad, Noémie; Chapman, Wendy W.; Manandhar, Suresh; Savova, Guergana (2014)

A common type system for clinical natural language processing. - Wu, Stephen T.; Kaggal, Vinod; Dligach, Dmitriy; Masanz, James J.; Chen, Pei J.; Becker, Lee; Chapman, Wendy Webber; Savova, Guergana K.; Liu, Hongfang; Chute, Christopher G. (J. Biomed. Semant., 2013)

Improving performance of natural language processing part-of-speech tagging on clinical narratives through domain adaptation. - Ferraro, Jeffrey P.; Daumé, Hal, III; DuVall, Scott L.; Chapman, Wendy Webber; Harkema, Henk; Haug, Peter J. (J. Am. Medical Informatics Assoc., 2013)

Using chief complaints for syndromic surveillance: A review of chief complaint based classifiers in North America. - Conway, Mike; Dowling, John N.; Chapman, Wendy Webber (J. Biomed. Informatics, 2013)

Identifying Synonymy between SNOMED Clinical Terms of Varying Length Using Distributional Analysis of Electronic Health Records. - Henriksson, Aron; Conway, Mike; Duneld, Martin; Chapman, Wendy Webber (2013)

An Information Extraction Based Search System for Clinical Records. - Jiao, Yan; Wei, Wei; Chapman, Wendy W. (2013)

Schema Builder: A Web-based User Interface for Authoring and Sharing Natural-Language Processing Schemas. - Liu, Yang; Tharp, Melissa; Hong, Matthew; Hochheiser, Harry; Chapman, Wendy W. (2013)

Semantic Annotation of Clinical Events for Generating a Problem List. - Mowery, Danielle L.; Jordan, Pamela W.; Wiebe, Janyce; Harkema, Henk; Chapman, Wendy W. (2013)

Creating a Reference Standard of Acronym and Abbreviation Annotations for the ShARe/CLEF eHealth Challenge 2013. - Mowery, Danielle L.; South, Brett R.; Leng, Jianwei; Murtola, Laura-Maria; Danielsson-Ojala, Riitta; Salanterä, Sanna; Chapman, Wendy W. (2013)

Panel: Shared Resources, Shared Code, and Shared Activities in Clinical Natural Language Processing. - Savova, Guergana; Chapman, Wendy Webber; Elhadad, Noemie; Palmer, Martha (2013)

Knowledge Representation for Topic Model Based Discharge Summary Clustering. - Wei, Wei; Jiao, Yan; Chapman, Wendy W. (2013)

Task 2: ShARe/CLEF eHealth Evaluation Lab 2013. - Mowery, Danielle L.; South, Brett R.; Christensen, Lee M.; Murtola, Laura-Maria; Salanterä, Sanna; Suominen, Hanna; Martínez, David; Elhadad, Noémie; Pradhan, Sameer; Savova, Guergana K.; Chapman, Wendy W. (2013)

Task 1: ShARe/CLEF eHealth Evaluation Lab 2013. - Pradhan, Sameer; Elhadad, Noémie; South, Brett R.; Martínez, David; Christensen, Lee M.; Vogel, Amy; Suominen, Hanna; Chapman, Wendy W.; Savova, Guergana K. (2013)

Overview of the ShARe/CLEF eHealth Evaluation Lab 2013. - Suominen, Hanna; Salanterä, Sanna; Velupillai, Sumithra; Chapman, Wendy Webber; Savova, Guergana K.; Elhadad, Noemie; Pradhan, Sameer; South, Brett R.; Mowery, Danielle L.; Jones, Gareth J. F.; Leveling, Johannes; Kelly, Liadh; et al. (2013)

Extending the NegEx Lexicon for Multiple Languages. - Chapman, Wendy Webber; Hillert, Dieter; Velupillai, Sumithra; Kvist, Maria; Skeppstedt, Maria; Chapman, Brian E.; Conway, Mike; Tharp, Melissa; Mowery, Danielle L.; Deléger, Louise (2013)

iDASH: integrating data for analysis, anonymization, and sharing. - Ohno-Machado, Lucila; Bafna, Vineet; Boxwala, Aziz A.; Chapman, Brian E.; Chapman, Wendy Webber; Chaudhuri, Kamalika; Day, Michele E.; Farcas, Claudiu; Heintzman, Nathaniel D.; Jiang, Xiaoqian; Kim, Hyeoneui; Kim, Jihoon; et al. (J. Am. Medical Informatics Assoc., 2012)

A system for coreference resolution for the clinical narrative. - Zheng, Jiaping; Chapman, Wendy Webber; Miller, Timothy A.; Lin, Chen; Crowley, Rebecca S.; Savova, Guergana K. (J. Am. Medical Informatics Assoc., 2012)

Building an automated SOAP classifier for emergency department reports. - Mowery, Danielle L.; Wiebe, Janyce; Visweswaran, Shyam; Harkema, Henk; Chapman, Wendy Webber (J. Biomed. Informatics, 2012)

Anaphoric reference in clinical reports: Characteristics of an annotated corpus. - Chapman, Wendy Webber; Savova, Guergana K.; Zheng, Jiaping; Tharp, Melissa; Crowley, Rebecca S. (J. Biomed. Informatics, 2012)

An approach to improve LOINC mapping through augmentation of local test names. - Kim, Hyeoneui; El-Kareh, Robert E.; Goel, Anupam; Vineet, F. N. U.; Chapman, Wendy Webber (J. Biomed. Informatics, 2012)

A Preliminary Approach for Creating a Semi-synthetic Multimodal Clinical Data Set from a Publicly Available Image Repository. - Ashfaq, Shazia; Gentili, Amilcare; Chapman, Wendy Webber; Chapman, Brian E. (2012)

Discovering Lexical Instantiations of Clinical Concepts using Web Services, WordNet and Corpus Resources. - Conway, Mike; Chapman, Wendy Webber (2012)

TxtVect: A Tool for Extracting Features from Clinical Documents. - Kumar, Abhishek; Chapman, Wendy W. (2012)

On the Road Towards Developing a Publicly Available Corpus of De-identified Clinical Texts. - South, Brett R.; Mowery, Danielle L.; Ferrández, Óscar; Shen, Shuying; Suo, Ying; Zhang, Mingyuan; Chen, Annie; Wang, Liqin; Meystre, Stéphane M.; Chapman, Wendy Webber (2012)

Medical diagnosis lost in translation - Analysis of uncertainty and negation expressions in English and Swedish clinical texts. - Mowery, Danielle L.; Velupillai, Sumithra; Chapman, Wendy W. (2012)

A Prototype Tool Set to Support Machine-Assisted Annotation. - South, Brett R.; Shen, Shuying; Leng, Jianwei; Forbush, Tyler; DuVall, Scott L.; Chapman, Wendy W. (2012)

Developing Resources to Assist in Development and Application of NLP to Clinical Texts. - Chapman, Wendy Webber (2012)

The Frequency of ConText Lexical Items in Diverse Medical Texts. - Chapman, Brian E.; Wei, Wei; Chapman, Wendy Webber (2012)

Does Domain Knowledge Matter for Assertion Annotation in Clinical Texts? - Mowery, Danielle L.; Jordan, Pamela W.; Wiebe, Janyce; Chapman, Wendy Webber; Liu, Lin (2012)

Anaphoric relations in the clinical narrative: corpus creation. - Savova, Guergana K.; Chapman, Wendy Webber; Zheng, Jiaping; Crowley, Rebecca S. (J. Am. Medical Informatics Assoc., 2011)

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. - Chapman, Wendy Webber; Nadkarni, Prakash M.; Hirschman, Lynette; D'Avolio, Leonard W.; Savova, Guergana K.; Uzuner, Özlem (J. Am. Medical Informatics Assoc., 2011)

Natural language processing: an introduction. - Nadkarni, Prakash M.; Ohno-Machado, Lucila; Chapman, Wendy Webber (J. Am. Medical Informatics Assoc., 2011)

Developing a natural language processing application for measuring the quality of colonoscopy procedures. - Harkema, Henk; Chapman, Wendy Webber; Saul, Melissa I.; Dellon, Evan S.; Schoen, Robert E.; Mehrotra, Ateev (J. Am. Medical Informatics Assoc., 2011)

Document-level classification of CT pulmonary angiography reports based on an extension of the ConText algorithm. - Chapman, Brian E.; Lee, Sean; Kang, Hyunseok Peter; Chapman, Wendy Webber (J. Biomed. Informatics, 2011)

Coreference resolution: A review of general methodologies and applications in the clinical domain. - Zheng, Jiaping; Chapman, Wendy Webber; Crowley, Rebecca S.; Savova, Guergana K. (J. Biomed. Informatics, 2011)

Developing syndrome definitions based on consensus and current use. - Chapman, Wendy Webber; Dowling, John N.; Baer, Atar; Buckeridge, David L.; Cochrane, Dennis; Conway, Michael A.; Elkin, Peter L.; Espino, Jeremy U.; Gunn, Julia E.; Hales, Craig M.; Hutwagner, Lori; Keller, Mikaela; et al. (J. Am. Medical Informatics Assoc., 2010)

Public sharing of research datasets: A pilot study of associations. - Piwowar, Heather A.; Chapman, Wendy Webber (J. Informetrics, 2010)

Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. - South, Brett R.; Shen, Shuying; Jones, Makoto; Garvin, Jennifer H.; Samore, Matthew H.; Chapman, Wendy Webber; Gundlapalli, Adi V. (BMC Bioinform., 2009)

Current issues in biomedical text mining and natural language processing. - Chapman, Wendy Webber; Cohen, K. Bretonnel (J. Biomed. Informatics, 2009)

What can natural language processing do for clinical decision support? - Demner-Fushman, Dina; Chapman, Wendy Webber; McDonald, Clement J. (J. Biomed. Informatics, 2009)

ConText: An algorithm for determining negation, experiencer, and temporal status from clinical reports. - Harkema, Henk; Dowling, John N.; Thornblade, Tyler; Chapman, Wendy Webber (J. Biomed. Informatics, 2009)

Methodology to Develop and Evaluate a Semantic Representation for NLP. - Irwin, Jeannie Yuhaniak; Harkema, Henk; Christensen, Lee M.; Schleyer, Titus; Haug, Peter J.; Chapman, Wendy Webber (2009)

Distinguishing Historical from Current Problems in Clinical Reports - Which Textual Features Help? - Mowery, Danielle L.; Harkema, Henk; Dowling, John N.; Lustgarten, Jonathan L.; Chapman, Wendy W. (2009)

ONYX: A System for the Semantic Analysis of Clinical Text. - Christensen, Lee M.; Harkema, Henk; Haug, Peter J.; Irwin, Jeannie Yuhaniak; Chapman, Wendy W. (2009)

Evaluation of training with an annotation schema for manual annotation of clinical conditions from emergency department reports. - Chapman, Wendy Webber; Dowling, John N.; Hripcsak, George (Int. J. Medical Informatics, 2008)

Evaluation of preprocessing techniques for chief complaint classification. - Dara, Jagan; Dowling, John N.; Travers, Debbie A.; Cooper, Gregory F.; Chapman, Wendy Webber (J. Biomed. Informatics, 2008)

Identifying Data Sharing in Biomedical Literature. - Piwowar, Heather A.; Chapman, Wendy Webber (2008)

Optimizing A Syndromic Surveillance Text Classifier for Influenza-like Illness: Does Document Source Matter? - South, Brett R.; Chapman, Wendy W.; Delisle, Sylvain; Shen, Shuying; Kalp, Ericka; Perl, Trish; Samore, Matthew H.; Gundlapalli, Adi V. (2008)

Analysis of a Failed Clinical Decision Support System for Management of Congestive Heart Failure. - Wadhwa, Rajiv; Fridsma, Douglas B.; Saul, Melissa I.; Penrod, Louis E.; Visweswaran, Shyam; Cooper, Gregory F.; Chapman, Wendy W. (2008)

Temporal Annotation of Clinical Text. - Mowery, Danielle L.; Harkema, Henk; Chapman, Wendy W. (2008)

A review of journal policies for sharing research data. - Piwowar, Heather A.; Chapman, Wendy Webber (2008)

Methods Paper: Heuristic Sample Selection to Minimize Reference Standard Training Set for a Part-Of-Speech Tagger. - Liu, Kaihong; Chapman, Wendy Webber; Hwa, Rebecca; Crowley, Rebecca S. (J. Am. Medical Informatics Assoc., 2007)

ConText: An Algorithm for Identifying Contextual Features from Clinical Text. - Chapman, Wendy W.; Dowling, John N.; Chu, David (2007)

Inductive creation of an annotation schema for manually indexing clinical conditions from emergency department reports. - Chapman, Wendy Webber; Dowling, John N. (J. Biomed. Informatics, 2006)

Evaluating the Effectiveness of Four Contextual Features in Classifying Annotated Clinical Conditions in Emergency Department Reports. - Chu, David; Dowling, John N.; Chapman, Wendy W. (2006)

Classifying free-text triage chief complaints into syndromic categories with natural language processing. - Chapman, Wendy Webber; Christensen, Lee M.; Wagner, Michael M.; Haug, Peter J.; Ivanov, Oleg; Dowling, John N.; Olszewski, Robert T. (Artif. Intell. Medicine, 2005)

Research Paper: Generating a Reliable Reference Standard Set for Syndromic Case Classification. - Chapman, Wendy Webber; Dowling, John N.; Wagner, Michael M. (J. Am. Medical Informatics Assoc., 2005)

Automating Tissue Bank Annotation from Pathology Reports - Comparison to a Gold Standard Expert Annotation Set. - Liu, Kaihong; Mitchell, Kevin J.; Chapman, Wendy W.; Crowley, Rebecca S. (2005)

A Software Tool to Assist Researchers in Coding Free Text Clinical Reports. - Ramachandran, Manoj; Cooper, Gregory F.; Chapman, Wendy W.; Dowling, John N. (2005)

Fever detection from free-text clinical records for biosurveillance. - Chapman, Wendy Webber; Dowling, John N.; Wagner, Michael M. (J. Biomed. Informatics, 2004)

Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap. - Chapman, Wendy W.; Fiszman, Marcelo; Dowling, John N.; Chapman, Brian E.; Rindflesch, Thomas C. (2004)

Implementation and Evaluation of a Negation Tagger in a Pipeline-based System for Information Extraction from Pathology Reports. - Mitchell, Kevin J.; Becich, Michael J.; Berman, Jules J.; Chapman, Wendy W.; Gilbertson, John R.; Gupta, Dilip; Harrison, James; Legowski, Elizabeth; Crowley, Rebecca S. (2004)

The RODS Open Source Project: Removing a Barrier to Syndromic Surveillance. - Espino, Jeremy U.; Wagner, Michael M.; Tsui, Fu-Chiang; Su, Hoah-Der; Olszewski, Robert T.; Liu, Zhen; Chapman, Wendy W.; Zeng, Xiaoming; Ma, Lili; Lu, Zhong Wei; Dara, Jagan (2004)

Analysis of Web Access Logs for Surveillance of Influenza. - Johnson, Heather A.; Wagner, Michael M.; Hogan, William R.; Chapman, Wendy W.; Olszewski, Robert T.; Dowling, John N.; Barnas, Gary (2004)

Research Paper: Creating a Text Classifier to Detect Radiology Reports Describing Mediastinal Findings Associated with Inhalational Anthrax and Other Disorders. - Chapman, Wendy Webber; Cooper, Gregory F.; Hanbury, Paul; Chapman, Brian E.; Harrison, Lee H.; Wagner, Michael M. (J. Am. Medical Informatics Assoc., 2003)

Application of Information Technology: Automated Syndromic Surveillance for the 2002 Winter Olympics. - Gesteland, Per H.; Gardner, Reed M.; Tsui, Fu-Chiang; Espino, Jeremy U.; Rolfs, Robert T.; James, Brent C.; Chapman, Wendy Webber; Moore, Andrew W.; Wagner, Michael M. (J. Am. Medical Informatics Assoc., 2003)

In their own words? A terminological analysis of e-mail to a cancer information service. - Arnott-Smith, Catherine; Stavri, P. Zoë; Chapman, Wendy Webber (2002)

Creating a Software Tool for the Clinical Researcher - the IPS System. - Buchanan, Bruce G.; Chapman, Wendy W.; Cooper, Gregory F.; Hanbury, Paul; Kayaalp, Mehmet; Ramachandran, Manoj; Saul, Melissa I. (2002)

Rapid deployment of an electronic disease surveillance system in the state of Utah for the 2002 Olympic Winter Games. - Gesteland, Per H.; Wagner, Michael M.; Chapman, Wendy W.; Espino, Jeremy U.; Tsui, Fu-Chiang; Gardner, Reed M.; Rolfs, Robert T.; Dato, Virginia M.; James, Brent C.; Haug, Peter J. (2002)

Accuracy of three classifiers of acute gastrointestinal syndrome for syndromic surveillance. - Ivanov, Oleg; Wagner, Michael M.; Chapman, Wendy W.; Olszewski, Robert T. (2002)

Data, network, and application: technical description of the Utah RODS Winter Olympic Biosurveillance System. - Tsui, Fu-Chiang; Espino, Jeremy U.; Wagner, Michael M.; Gesteland, Per H.; Ivanov, Oleg; Olszewski, Robert T.; Liu, Zhen; Zeng, Xiaoming; Chapman, Wendy W.; Wong, Weng-Keen; Moore, Andrew W. (2002)

A Comparison of Classification Algorithms to Automatically Identify Chest X-Ray Reports That Support Pneumonia. - Chapman, Wendy Webber; Fiszman, Marcelo; Chapman, Brian E.; Haug, Peter J. (J. Biomed. Informatics, 2001)

A Simple Algorithm for Identifying Negated Findings and Diseases in Discharge Summaries. - Chapman, Wendy Webber; Bridewell, Will; Hanbury, Paul; Cooper, Gregory F.; Buchanan, Bruce G. (J. Biomed. Informatics, 2001)

Combining decision support methodologies to diagnose pneumonia. - Aronsky, Dominik; Fiszman, Marcelo; Chapman, Wendy W.; Haug, Peter J. (2001)

Evaluation of negation phrases in narrative clinical reports. - Chapman, Wendy W.; Bridewell, Will; Hanbury, Paul; Cooper, Gregory F.; Buchanan, Bruce G. (2001)

IPS: A System That Uses Machine Learning to Help Locate Patient Records for Clinical Research. - Cooper, Gregory F.; Buchanan, Bruce G.; Chapman, Wendy W.; Hanbury, Paul; Kayaalp, Mehmet; Saul, Melissa I. (2001)

Research Paper: Automatic Detection of Acute Bacterial Pneumonia from Chest X-ray Reports. - Fiszman, Marcelo; Chapman, Wendy Webber; Aronsky, Dominik; Evans, R. Scott; Haug, Peter J. (J. Am. Medical Informatics Assoc., 2000)

Contribution of a speech recognition system to a computerized pneumonia guideline in the emergency department. - Chapman, Wendy W.; Aronsky, Dominik; Fiszman, Marcelo; Haug, Peter J. (2000)

Using Decision Tree Classifiers to Confirm Pneumonia Diagnosis. - Eardley, David D.; Aronsky, Dominik; Chapman, Wendy W.; Haug, Peter J. (2000)

Correct vs. Parsed Data for Inferring Pneumonia in Chest X-ray Reports. - Chapman, Wendy Webber; Fiszman, Marcelo; Haug, Peter J. (1999)

Comparing expert systems for identifying chest x-ray reports that support pneumonia. - Chapman, Wendy W.; Haug, Peter J. (1999)

Automatic identification of pneumonia related concepts on chest x-ray reports. - Fiszman, Marcelo; Chapman, Wendy W.; Evans, R. Scott; Haug, Peter J. (1999)

Bayesian modeling for linking causally related observations in chest X-ray reports. - Chapman, Wendy W.; Haug, Peter J. (1998)