BioHackathon 2015: Semantics of data for life sciences and reproducible research - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains - Toshiaki Katayama; Mark D. Wilkinson; Kiyoko F. Aoki-Kinoshita; Shuichi Kawashima; Yasunori Yamamoto; Atsuko Yamaguchi; Shinobu Okamoto; Shin Kawano; Jin-Dong Kim; Yue Wang; Hongyan Wu; Yoshinobu Kano; et al. (J. Biomed. Semant., 2014)

G-Links: a gene-centric link acquisition service - Kazuki Oshita; Masaru Tomita; Kazuharu Arakawa (F1000Research, 2014)

GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses - Hidetoshi Itaya; Kazuki Oshita; Kazuharu Arakawa; Masaru Tomita (Source Code Biol. Medicine, 2013)

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications - Toshiaki Katayama; Mark D. Wilkinson; Rutger A. Vos; Takeshi Kawashima; Shuichi Kawashima; Mitsuteru Nakao; Yasunori Yamamoto; Hong-Woo Chun; Atsuko Yamaguchi; Shin Kawano; Jan Aerts; Kiyoko F. Aoki-Kinoshita; et al. (J. Biomed. Semant., 2011)

KBWS: an EMBOSS associated package for accessing bioinformatics web services - Kazuki Oshita; Kazuharu Arakawa; Masaru Tomita (Source Code Biol. Medicine, 2011)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

G-language genome analysis environment with REST and SOAP web service interfaces - Kazuharu Arakawa; Nobuhiro Kido; Kazuki Oshita; Masaru Tomita (Nucleic Acids Res., 2010)

Genome Projector: zoomable genome map with multiple views - Kazuharu Arakawa; Satoshi Tamaki; Nobuaki Kono; Nobuhiro Kido; Keita Ikegami; Ryu Ogawa; Masaru Tomita (BMC Bioinform., 2009)

A web server for interactive and zoomable Chaos Game Representation images - Kazuharu Arakawa; Kazuki Oshita; Masaru Tomita (Source Code Biol. Medicine, 2009)

Comparative Study of Circadian Oscillatory Network Models of Drosophila - Yukino Ogawa; Kazuharu Arakawa; Kazunari Kaizu; Fumihiko Miyoshi; Yoichi Nakayama; Masaru Tomita (Artif. Life, 2008)

Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics - Satoshi Tamaki; Kazuharu Arakawa; Nobuaki Kono; Masaru Tomita (Genom. Proteom. Bioinform., 2007)

GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes - Kazuharu Arakawa; Yohei Yamada; Kosaku Shinoda; Yoichi Nakayama; Masaru Tomita (BMC Bioinform., 2006)

GPAC: Benchmarking the Sensitivity of Genome Informatics Analysis to Genome Annotation Completeness - Kazuharu Arakawa; Yoichi Nakayama; Masaru Tomita (Silico Biol., 2006)

MEGU: Pathway Mapping Web-Service Based on KEGG and SVG - Nobuaki Kono; Kazuharu Arakawa; Masaru Tomita (Silico Biol., 2006)

KEGG-Based Pathway Visualization Tool for Complex Omics Data - Kazuharu Arakawa; Nobuaki Kono; Yohei Yamada; Hirotada Mori; Masaru Tomita (Silico Biol., 2005)

G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining - Kazuharu Arakawa; Koya Mori; Katsuhiko Ikeda; Tatekimi Matsuzaki; Yusuke Kobayashi; Masaru Tomita (Bioinform., 2003)