A Constrast-Agnostic Method for Ultra-High Resolution Claustrum Segmentation. - Mauri, Chiara; Fritz, Ryan; Mora, Jocelyn; Billot, Benjamin; Iglesias, Juan Eugenio; Leemput, Koen Van; Augustinack, Jean; Greve, Douglas N. (CoRR, 2024)

Conductance-Based Structural Brain Connectivity in Aging and Dementia. - Frau-Pascual, Aina; Augustinack, Jean; Varadarajan, Divya; Yendiki, Anastasia; Salat, David H.; Fischl, Bruce; Aganj, Iman (Brain Connect., 2021)

Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. - Huang, Susie Yi; Witzel, Thomas; Keil, Boris; Scholz, Alina; Davids, Mathias; Dietz, Peter; Rummert, Elmar; Ramb, Rebecca; Kirsch, John E.; Yendiki, Anastasia; Fan, Qiuyun; Tian, Qiyuan; et al. (NeuroImage, 2021)

A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. - Greve, Douglas N.; Billot, Benjamin; Cordero, Devani; Hoopes, Andrew; Hoffmann, Malte; Dalca, Adrian V.; Fischl, Bruce; Iglesias, Juan Eugenio; Augustinack, Jean C. (NeuroImage, 2021)

High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation. - Jones, Robert; Maffei, Chiara; Augustinack, Jean; Fischl, Bruce; Wang, Hui; Bilgic, Berkin; Yendiki, Anastasia (NeuroImage, 2021)

Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. - Jones, Robert; Grisot, Giorgia; Augustinack, Jean; Magnain, Caroline; Boas, David A.; Fischl, Bruce; Wang, Hui; Yendiki, Anastasia (NeuroImage, 2020)

Compensatory Brain Connection Discovery in Alzheimer's Disease. - Aganj, Iman; Frau-Pascual, Aina; Iglesias, Juan Eugenio; Yendiki, Anastasia; Augustinack, Jean C.; Salat, David H.; Fischl, Bruce (2020)

Detecting Structural Brain Connectivity Differences in Dementia Through a Conductance Model. - Frau-Pascual, Aina; Augustinack, Jean; Varadarajan, Divya; Yendiki, Anastasia; Fischl, Bruce; Aganj, Iman (2019)

as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. - Wang, Hui; Magnain, Caroline; Wang, Ruopeng; Dubb, Jay; Varjabedian, Ani; Tirrell, Lee S.; Stevens, Allison; Augustinack, Jean C.; Konukoglu, Ender; Aganj, Iman; Frosch, Matthew P.; Schmahmann, Jeremy D.; et al. (NeuroImage, 2018)

High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. - Saygin, Zeynep M.; Kliemann, Dorit; Iglesias, Juan Eugenio; Kouwe, André J. W. van der; Boyd, Ellen; Reuter, Martin; Stevens, Allison; Leemput, Koenraad Van; McKee, Alexis; Frosch, Matthew P.; Fischl, Bruce; Augustinack, Jean C. (NeuroImage, 2017)

Rapid multi-orientation quantitative susceptibility mapping. - Bilgic, Berkin; Xie, Luke; Dibb, Russell; Langkammer, Christian; Mutluay, Aysegul; Ye, Huihui; Polimeni, Jonathan R.; Augustinack, Jean; Liu, Chunlei; Wald, Lawrence L.; Setsompop, Kawin (NeuroImage, 2016)

Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. - Iglesias, Juan Eugenio; Leemput, Koen Van; Augustinack, Jean; Insausti, Ricardo; Fischl, Bruce; Reuter, Martin (NeuroImage, 2016)

Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol. - Yushkevich, Paul A.; Amaral, Robert S. C.; Augustinack, Jean C.; Bender, Andrew R.; Bernstein, Jeffrey D.; Boccardi, Marina; Bocchetta, Martina; Burggren, Alison C.; Carr, Valerie A.; Chakravarty, M. Mallar; Chételat, Gaël; Daugherty, Ana M.; et al. (NeuroImage, 2015)

A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. - Iglesias, Juan Eugenio; Augustinack, Jean C.; Nguyen, Khoa; Player, Christopher M.; Player, Allison; Wright, Michelle; Roy, Nicole; Frosch, Matthew P.; McKee, Ann C.; Wald, Lawrence L.; Fischl, Bruce; Leemput, Koen Van (NeuroImage, 2015)

Blockface histology with optical coherence tomography: A comparison with Nissl staining. - Magnain, Caroline; Augustinack, Jean; Reuter, Martin; Wachinger, Christian; Frosch, Matthew P.; Ragan, Timothy; Akkin, Taner; Wedeen, Van J.; Boas, David A.; Fischl, Bruce (NeuroImage, 2014)

MRI parcellation of ex vivo medial temporal lobe. - Augustinack, Jean C.; Magnain, Caroline; Reuter, Martin; Kouwe, André J. W. van der; Boas, David A.; Fischl, Bruce (NeuroImage, 2014)

Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. - Augustinack, Jean; Huber, Kristen; Stevens, Allison; Roy, Michelle; Frosch, Matthew P.; Kouwe, André J. W. van der; Wald, Lawrence L.; Leemput, Koen Van; McKee, Ann C.; Fischl, Bruce (NeuroImage, 2013)

Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex. - McNab, Jennifer A.; Polimeni, Jonathan R.; Wang, Ruopeng; Augustinack, Jean; Fujimoto, Kyoko; Stevens, Allison; Janssens, Thomas; Farivar, Reza; Folkerth, Rebecca D.; Vanduffel, Wim; Wald, Lawrence L. (NeuroImage, 2013)

Corrigendum to "Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex" [NeuroImage 69 (2013) 87-100]. - McNab, Jennifer A.; Polimeni, Jonathan R.; Wang, Ruopeng; Augustinack, Jean; Fujimoto, Kyoko; Stevens, Allison; Triantafyllou, Christina; Janssens, Thomas; Farivar, Reza; Folkerth, Rebecca D.; Vanduffel, Wim; Wald, Lawrence L. (NeuroImage, 2013)

Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy. - Yendiki, Anastasia; Panneck, Patricia; Srinivasan, Priti; Stevens, Allison; Zöllei, Lilla; Augustinack, Jean; Wang, Ruopeng; Salat, David H.; Ehrlich, Stefan; Behrens, Tim E. J.; Jbabdi, Saâd; Gollub, Randy L.; et al. (Frontiers Neuroinformatics, 2011)

Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography. - Saygin, Zeynep M.; Osher, David E.; Augustinack, Jean; Fischl, Bruce; Gabrieli, John D. E. (NeuroImage, 2011)

Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age. - Ghosh, Satrajit S.; Kakunoori, Sita; Augustinack, Jean; Nieto-Castañón, Alfonso; Kovelman, Ioulia; Gaab, Nadine; Christodoulou, Joanna A.; Triantafyllou, Christina; Gabrieli, John D. E.; Fischl, Bruce (NeuroImage, 2010)

Predicting the location of entorhinal cortex from MRI. - Fischl, Bruce; Stevens, Allison; Rajendran, Niranjini; Yeo, B. T. Thomas; Greve, Douglas N.; Leemput, Koen Van; Polimeni, Jonathan R.; Kakunoori, Sita; Buckner, Randy L.; Pacheco, Jennifer L.; Salat, David H.; Melcher, Jennifer; et al. (NeuroImage, 2009)

Anatomical Priors for Global Probabilistic Diffusion Tractography. - Yendiki, Anastasia; Stevens, Allison; Augustinack, Jean; Salat, David H.; Zöllei, Lilla; Fischl, Bruce (2009)

Accurate prediction of V1 location from cortical folds in a surface coordinate system. - Hinds, Oliver; Rajendran, Niranjini; Polimeni, Jonathan R.; Augustinack, Jean C.; Wiggins, Graham C.; Wald, Lawrence L.; Rosas, H. Diana; Potthast, Andreas; Schwartz, Eric L.; Fischl, Bruce (NeuroImage, 2008)

Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI. - Leemput, Koen Van; Bakkour, Akram; Benner, Thomas; Wiggins, Graham C.; Wald, Lawrence L.; Augustinack, Jean; Dickerson, Bradford C.; Golland, Polina; Fischl, Bruce (2008)