AlignScape, displaying sequence similarity using self-organizing maps. - Filella-Merce, Isaac; Mallet, Vincent; Durand, Eric; Nilges, Michael; Bouvier, Guillaume; Pellarin, Riccardo (Frontiers Bioinform., 2024)

InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions. - Mallet, Vincent; Ruano, Luis Checa; Moine-Franel, Alexandra; Nilges, Michael; Druart, Karen; Bouvier, Guillaume; Sperandio, Olivier (Bioinform., 2022)

Meet-U: Educating through research immersion. - Abdollahi, Nika; Albani, Alexandre; Anthony, Éric; Baud, Agnes; Cardon, Mélissa; Clerc, Robert; Czernecki, Dariusz; Conte, Romain; David, Laurent; Delaune, Agathe; Djerroud, Samia; Fourgoux, Pauline; et al. (PLoS Comput. Biol., 2018)

Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel. - Cortes-Ciriano, Isidro; Westen, Gerard J. P. van; Bouvier, Guillaume; Nilges, Michael; Overington, John P.; Bender, Andreas; Malliavin, Thérèse E. (Bioinform., 2016)

Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa: d-Lac Ligase VanA. - Duclert-Savatier, Nathalie; Bouvier, Guillaume; Nilges, Michael; Malliavin, Thérèse E. (J. Chem. Inf. Model., 2016)

An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps. - Bouvier, Guillaume; Desdouits, Nathan; Ferber, Mathias; Blondel, Arnaud; Nilges, Michael (Bioinform., 2015)

An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. - Cassioli, Andrea; Bardiaux, Benjamin; Bouvier, Guillaume; Mucherino, Antonio; Alves, Rafael; Liberti, Leo; Nilges, Michael; Lavor, Carlile; Malliavin, Thérèse E. (BMC Bioinform., 2015)

Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis. - Harigua-Souiai, Emna; Cortes-Ciriano, Isidro; Desdouits, Nathan; Malliavin, Thérèse E.; Guizani, Ikram; Nilges, Michael; Blondel, Arnaud; Bouvier, Guillaume (BMC Bioinform., 2015)

Functional Motions Modulating VanA Ligand Binding Unraveled by Self-Organizing Maps. - Bouvier, Guillaume; Duclert-Savatier, Nathalie; Desdouits, Nathan; Meziane-Cherif, Djalal; Blondel, Arnaud; Courvalin, Patrice; Nilges, Michael; Malliavin, Thérèse E. (J. Chem. Inf. Model., 2014)

A convective replica-exchange method for sampling new energy basins. - Spill, Yannick G.; Bouvier, Guillaume; Nilges, Michael (J. Comput. Chem., 2013)

Erratum: A convective replica-exchange method for sampling new energy basins. - Spill, Yannick G.; Bouvier, Guillaume; Nilges, Michael (J. Comput. Chem., 2013)

Étude d'inhibiteurs de l'intégrase du VIH-1 par RMN et modélisation moléculaire : Développement et validation d'un outil de criblage virtuel. (HIV-1 integrase inhibitors study by NMR and molecular modeling). - Bouvier, Guillaume (2010)

Automatic clustering of docking poses in virtual screening process using self-organizing map. - Bouvier, Guillaume; Evrard-Todeschi, Nathalie; Girault, Jean-Pierre; Bertho, Gildas (Bioinform., 2010)