From affinity selection to kinetic selection in Germinal Centre modelling. - Lashgari, Danial; Tejero, Elena Merino; Meyer-Hermann, Michael; Claireaux, Mathieu A. F.; Gils, Marit J. van; Hoefsloot, Huub C. J.; Kampen, Antoine H. C. van (PLoS Comput. Biol., 2022)

compendiumdb: an R package for retrieval and storage of functional genomics data. - Nandal, Umesh K.; Kampen, Antoine H. C. van; Moerland, Perry D. (Bioinform., 2016)

Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets. - Nandal, Umesh K.; Vlietstra, Wytze J.; Byrman, Carsten; Jeeninga, Rienk E.; Ringrose, Jeffrey H.; Kampen, Antoine H. C. van; Speijer, Dave; Moerland, Perry D. (BMC Bioinform., 2015)

Using Petri nets for experimental design in a multi-organ elimination pathway. - Reshetova, Polina; Smilde, Age K.; Westerhuis, Johan A.; Kampen, Antoine H. C. van (Comput. Biol. Medicine, 2015)

A data-centric neuroscience gateway: design, implementation, and experiences. - Shahand, Shayan; Benabdelkader, Ammar; Jaghoori, Mohammad Mahdi; Mourabit, Mostapha al; Huguet, Jordi; Caan, Matthan W. A.; Kampen, Antoine H. C. van; Olabarriaga, Sílvia Delgado (Concurr. Comput. Pract. Exp., 2015)

Science Gateway Canvas: A business reference model for Science Gateways. - Shahand, Shayan; Kampen, Antoine H. C. van; Olabarriaga, Sílvia Delgado (2015)

PROV-man: A PROV-compliant toolkit for provenance management. - Benabdelkader, Ammar; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (PeerJ Prepr., 2015)

Knowledge representation in metabolic pathway databases. - Stobbe, Miranda D.; Jansen, Gerbert A.; Moerland, Perry D.; Kampen, Antoine H. C. van (Briefings Bioinform., 2014)

Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. - Reshetova, Polina; Smilde, Age K.; Kampen, Antoine H. C. van; Westerhuis, Johan A. (BMC Syst. Biol., 2014)

Computational Neuroscience Gateway: A Science Gateway Based on the WS-PGRADE/gUSE. - Shahand, Shayan; Jaghoori, Mohammad Mahdi; Benabdelkader, Ammar; Font-Calvo, Juan Luis; Huguet, Jordi; Caan, Matthan W. A.; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (2014)

Consensus and conflict cards for metabolic pathway databases. - Stobbe, Miranda D.; Swertz, Morris A.; Thiele, Ines; Rengaw, Trebor; Kampen, Antoine H. C. van; Moerland, Perry D. (BMC Syst. Biol., 2013)

Characterizing workflow-based activity on a production e-infrastructure using provenance data. - Madougou, Souley; Shahand, Shayan; Santcroos, Mark; Schaik, Barbera D. C. van; Benabdelkader, Ammar; Kampen, Antoine H. C. van; Olabarriaga, Sílvia Delgado (Future Gener. Comput. Syst., 2013)

e-Bioscience Solutions and Challenges for Next Generation Sequencing Experiments. - Schaik, Barbera D. C. van; Santcroos, Mark; Madougou, Souley; Jongejan, Aldo; Kampen, Antoine H. C. van; Olabarriaga, Sílvia Delgado (2013)

A Data-Centric Science Gateway for Computational Neuroscience. - Shahand, Shayan; Benabdelkader, Ammar; Huguet, Jordi; Jaghoori, Mohammad Mahdi; Santcroos, Mark; Mourabit, Mostapha al; Groot, Paul F. C.; Caan, Matthan W. A.; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (2013)

Understanding workflows for distributed computing: nitty-gritty details. - Olabarriaga, Sílvia Delgado; Jaghoori, Mohammad Mahdi; Korkhov, Vladimir; Schaik, Barbera D. C. van; Kampen, Antoine H. C. van (2013)

Evolution of grid-based services for Diffusion Tensor Image analysis. - Caan, Matthan W. A.; Shahand, Shayan; Vos, Frans M.; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (Future Gener. Comput. Syst., 2012)

A Grid-Enabled Gateway for Biomedical Data Analysis. - Shahand, Shayan; Santcroos, Mark; Kampen, Antoine H. C. van; Olabarriaga, Sílvia Delgado (J. Grid Comput., 2012)

Legal constraints on genetic data processing in European grids. - Mouw, Evert; Noordende, Guido van 't; Kampen, Antoine H. C. van; Louter, Baas; Santcroos, Mark; Olabarriaga, Sílvia D. (2012)

Provenance for distributed biomedical workflow execution. - Madougou, Souley; Santcroos, Mark; Benabdelkader, Ammar; Schaik, Barbera D. C. van; Shahand, Shayan; Korkhov, Vladimir; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (2012)

Integrated Support for Neuroscience Research: from Study Design to Publication. - Shahand, Shayan; Caan, Matthan W. A.; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (2012)

Critical assessment of human metabolic pathway databases: a stepping stone for future integration. - Stobbe, Miranda D.; Houten, Sander M.; Jansen, Gerbert A.; Kampen, Antoine H. C. van; Moerland, Perry D. (BMC Syst. Biol., 2011)

A Provenance Approach to Trace Scientific Experiments on a Grid Infrastructure. - Benabdelkader, Ammar; Santcroos, Mark; Madougou, Souley; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (2011)

Data Decomposition in Biomedical e-Science Applications. - Mohammed, Yassene; Shahand, Shayan; Korkhov, Vladimir; Luyf, Angela C. M.; Schaik, Barbera D. C. van; Caan, Matthan W. A.; Kampen, Antoine H. C. van; Palmblad, Magnus; Olabarriaga, Sílvia D. (2011)

Initial steps towards a production platform for DNA sequence analysis on the grid. - Luyf, Angela C. M.; Schaik, Barbera D. C. van; Vries, Michel de; Baas, Frank; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D. (BMC Bioinform., 2010)

Gridifying a Diffusion Tensor Imaging Analysis Pipeline. - Caan, Matthan W. A.; Vos, Frans M.; Kampen, Antoine H. C. van; Olabarriaga, Sílvia D.; Vliet, Lucas J. van (2010)

Hitting the ground running: Healthgrid deployment and adoption. - Gwadry-Sridhar, Femida; Olabarriaga, Sílvia Delgado; Kampen, Antoine H. C. van; Bauer, Michael; Solomonides, Tony (2010)

Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways. - Willemsen, A. M.; Jansen, Gerbert A.; Komen, J. C.; Hooff, S. van; Waterham, H. R.; Brites, P. M. T.; Wanders, Ronald J. A.; Kampen, Antoine H. C. van (2008)

delta rho-Web, an online tool to assess composition similarity of individual nucleic acid sequences. - Passel, M. W. J. van; Luyf, Angela C. M.; Kampen, Antoine H. C. van; Bart, Aldert; Ende, A. van der (Bioinform., 2005)

Visualizing metabolic activity on a genome-wide scale. - Luyf, Angela C. M.; Gast, J. de; Kampen, Antoine H. C. van (Bioinform., 2002)

USAGE: a web-based approach towards the analysis of SAGE data. - Kampen, Antoine H. C. van; Schaik, Barbera D. C. van; Pauws, Erwin; Michiels, E. M. C.; Ruijter, J. M.; Caron, H. N.; Versteeg, Rogier; Heisterkamp, S. H.; Leunissen, Jack A. M.; Baas, Frank; Mee, M. van der (Bioinform., 2000)

Reinvestigation of a Genetic-based Classifier System: The Effectiveness of Recombination. - Kampen, Antoine H. C. van; Buydens, Lutgarde M. C. (Comput. Chem., 1997)

A Comparative Study of the DG-OMEGA (DG), DGII, and GAT Method for the Structure Elucidation of a Methylene-acetal Linked Thymine Dinucleotide. - Kampen, Antoine H. C. van; Beckers, Mischa L. M.; Buydens, Lutgarde M. C. (Comput. Chem., 1997)