Multimodal Patient Representation Learning with Missing Modalities and Labels. - Wu, Zhenbang; Dadu, Anant; Tustison, Nicholas J.; Avants, Brian B.; Nalls, Mike A.; Sun, Jimeng; Faghri, Faraz (2024)

Similarity-driven multi-view embeddings from high-dimensional biomedical data. - Avants, Brian B.; Tustison, Nicholas J.; Stone, James R. (Nat. Comput. Sci., 2021)

Publisher Correction: Similarity-driven multi-view embeddings from high-dimensional biomedical data. - Avants, Brian B.; Tustison, Nicholas J.; Stone, James R. (Nat. Comput. Sci., 2021)

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results. - Mehta, Raghav; Filos, Angelos; Baid, Ujjwal; Sako, Chiharu; McKinley, Richard; Rebsamen, Michael; Dätwyler, Katrin; Meier, Raphael; Radojewski, Piotr; Murugesan, Gowtham Krishnan; Nalawade, Sahil S.; Ganesh, Chandan; et al. (CoRR, 2021)

Brain Tumor Segmentation Using an Ensemble of 3D U-Nets and Overall Survival Prediction Using Radiomic Features. - Feng, Xue; Tustison, Nicholas J.; Patel, Sohil H.; Meyer, Craig H. (Frontiers Comput. Neurosci., 2020)

Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data. - Beer, Joanne C.; Tustison, Nicholas J.; Cook, Philip A.; Davatzikos, Christos; Sheline, Yvette I.; Shinohara, Russell T.; Linn, Kristin A. (NeuroImage, 2020)

Deep Volumetric Feature Encoding for Biomedical Images. - Avants, Brian B.; Greenblatt, Elliot; Hesterman, Jacob; Tustison, Nicholas J. (2020)

Interpretable, similarity-driven multi-view embeddings from high-dimensional biomedical data. - Avants, Brian B.; Tustison, Nicholas J.; Stone, James R. (CoRR, 2020)

Multi-Site Meta-Analysis of Morphometry. - Jahanshad, Neda; Faskowitz, Joshua; Roshchupkin, Gennady V.; Hibar, Derrek P.; Gutman, Boris A.; Tustison, Nicholas J.; Adams, Hieab H. H.; Niessen, Wiro J.; Vernooij, Meike W.; Ikram, Mohammad Arfan; Zwiers, Marcel P.; Arias-Vasquez, Alejandro; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Brain Tumor Segmentation with Uncertainty Estimation and Overall Survival Prediction. - Feng, Xue; Dou, Quan; Tustison, Nicholas J.; Meyer, Craig H. (2019)

Deformable Registration of Whole Brain Zebrafish Microscopy Using an Implementation of the Flash Algorithm Within Ants. - Fleishman, Greg M.; Zhang, Miaomiao; Tustison, Nicholas J.; Espinosa-Medina, Isabel; Mu, Yu; Khairy, Khaled; Ahrens, Misha B. (2019)

Brain Tumor Segmentation Using an Ensemble of 3D U-Nets and Overall Survival Prediction Using Radiomic Features. - Feng, Xue; Tustison, Nicholas J.; Meyer, Craig H. (2018)

Brain Tumor Segmentation using an Ensemble of 3D U-Nets and Overall Survival Prediction using Radiomic Features. - Feng, Xue; Tustison, Nicholas J.; Meyer, Craig H. (CoRR, 2018)

Multivariate modeling using quantitative CT metrics may improve accuracy of diagnosis of bronchiolitis obliterans syndrome after lung transplantation. - Barbosa, Eduardo, Jr.; Simpson, Scott; Lee, James C.; Tustison, Nicholas J.; Gee, James C.; Shou, Haochang (Comput. Biol. Medicine, 2017)

An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI. - Pontre, Beau; Cowan, Brett R.; DiBella, Edward; Kulaseharan, Sancgeetha; Likhite, Devavrat; Noorman, Nils; Tautz, Lennart; Tustison, Nicholas J.; Wollny, Gert; Young, Alistair A.; Suinesiaputra, Avan (IEEE J. Biomed. Health Informatics, 2017)

Neuroinformatics and the The Insight ToolKit. - Avants, Brian B.; Johnson, Hans J.; Tustison, Nicholas J. (Frontiers Neuroinformatics, 2015)

Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR. - Tustison, Nicholas J.; Shrinidhi, K. L.; Wintermark, Max; Durst, Christopher R.; Kandel, Benjamin M.; Gee, James C.; Grossman, Murray C.; Avants, Brian B. (Neuroinformatics, 2015)

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). - Menze, Bjoern H.; Jakab, András; Bauer, Stefan; Kalpathy-Cramer, Jayashree; Farahani, Keyvan; Kirby, Justin S.; Burren, Yuliya; Porz, Nicole; Slotboom, Johannes; Wiest, Roland; Lanczi, Levente; Gerstner, Elizabeth R.; et al. (IEEE Trans. Medical Imaging, 2015)

The Insight ToolKit image registration framework. - Avants, Brian B.; Tustison, Nicholas J.; Gee, James C.; Song, Gang; Wu, Baohua; Stauffer, Michael (Frontiers Neuroinformatics, 2014)

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. - Tustison, Nicholas J.; Cook, Philip A.; Klein, Arno; Song, Gang; Das, Sandhitsu R.; Duda, Jeffrey T.; Kandel, Benjamin M.; Strien, Niels van; Stone, James R.; Gee, James C.; Avants, Brian B. (NeuroImage, 2014)

Advanced Normalization Tools for Cardiac Motion Correction. - Tustison, Nicholas J.; Yang, Yang; Salerno, Michael (2014)

Explicit B-spline regularization in diffeomorphic image registration. - Tustison, Nicholas J.; Avants, Brian B. (Frontiers Neuroinformatics, 2013)

Diffeomorphic Directly Manipulated Free-Form Deformation Image Registration via Vector Field Flows. - Tustison, Nicholas J.; Avants, Brian B. (2012)

A Unified Image Registration Framework for ITK. - Avants, Brian B.; Tustison, Nicholas J.; Song, Gang; Wu, Baohua; Stauffer, Michael; McCormick, Matthew; Johnson, Hans J.; Gee, James C. (2012)

A reproducible evaluation of ANTs similarity metric performance in brain image registration. - Avants, Brian B.; Tustison, Nicholas J.; Song, Gang; Cook, Philip A.; Klein, Arno; Gee, James C. (NeuroImage, 2011)

An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. - Avants, Brian B.; Tustison, Nicholas J.; Wu, Jue; Cook, Philip A.; Gee, James C. (Neuroinformatics, 2011)

Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation. - Tustison, Nicholas J.; Avants, Brian B.; Siqueira, Marcelo; Gee, James C. (IEEE Trans. Image Process., 2011)

Point Set Registration Using Havrda-Charvat-Tsallis Entropy Measures. - Tustison, Nicholas J.; Awate, Suyash P.; Song, Gang; Cook, Tessa Sundaram; Gee, James C. (IEEE Trans. Medical Imaging, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Murphy, Keelin; Ginneken, Bram van; Reinhardt, Joseph M.; Kabus, Sven; Ding, Kai; Deng, Xiang; Cao, Kunlin; Du, Kaifang; Christensen, Gary E.; Garcia, Vincent; Vercauteren, Tom; Ayache, Nicholas; et al. (IEEE Trans. Medical Imaging, 2011)

N4ITK: Improved N3 Bias Correction. - Tustison, Nicholas J.; Avants, Brian B.; Cook, Philip A.; Zheng, Yuanjie; Egan, Alexander; Yushkevich, Paul A.; Gee, James C. (IEEE Trans. Medical Imaging, 2010)

Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. - Avants, Brian B.; Cook, Philip A.; McMillan, Corey; Grossman, Murray; Tustison, Nicholas J.; Zheng, Yuanjie; Gee, James C. (2010)

Directly Manipulated Free-Form Deformation Image Registration. - Tustison, Nicholas J.; Avants, Brian B.; Gee, James C. (IEEE Trans. Image Process., 2009)

A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration. - Tustison, Nicholas J.; Awate, Suyash P.; Song, Gang; Cook, Tessa Sundaram; Gee, James C. (2009)

Computational Analysis of HRCT Images for Characterization and Differentiation of ILD and COPD. - Song, Gang; Barbosa, Eduardo, Jr.; Tustison, Nicholas J.; Gee, James C.; Gefter, Warren B.; Kreider, Maryl; Torigian, Drew A. (2009)

Topological Repairing of 3D Digital Images. - Siqueira, Marcelo; Latecki, Longin Jan; Tustison, Nicholas J.; Gallier, Jean H.; Gee, James C. (J. Math. Imaging Vis., 2008)

Point-set registration of tagged HE-3 images using a structurally-based Jensen-Shannon divergence measure within a deterministic annealing framework. - Tustison, Nicholas J.; Awate, Suyash P.; Altes, Talissa A.; Gee, James C.; Cai, Jing; Miller, G. Wilson; Lange, Eduard E. de; Mugler, John P., III (2008)

Improved FFD B-Spline Image Registration. - Tustison, Nicholas J.; Avants, Brian B.; Gee, James C. (2007)

Pulmonary Kinematics from Hyperpolarized Helium-3 Tagged Magnetic Resonance Imaging. - Tustison, Nicholas J.; Altes, Talissa A.; Gee, James C.; Cai, Jing; Lange, Eduard E. de; Mugler, John P., III (2007)

How Do Registration Parameters Affect Quantitation of Lung Kinematics? - Cook, Tessa Sundaram; Tustison, Nicholas J.; Biederer, Jürgen; Tetzlaff, Ralf; Gee, James C. (2007)

Biventricular myocardial strains via nonrigid registration of AnFigatomical NURBS models. - Tustison, Nicholas J.; Amini, Amir A. (IEEE Trans. Medical Imaging, 2006)

Adaptive graph cuts with tissue priors for brain MRI segmentation. - Song, Zhuang; Tustison, Nicholas J.; Avants, Brian B.; Gee, James C. (2006)

Generalized n-D Ck B-Spline Scattered Data Approximation with Confidence Values. - Tustison, Nicholas J.; Gee, James C. (2006)

Integrated Graph Cuts for Brain MRI Segmentation. - Song, Zhuang; Tustison, Nicholas J.; Avants, Brian B.; Gee, James C. (2006)

A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework. - Tustison, Nicholas J.; Avants, Brian B.; Sundaram, Tessa A.; Duda, Jeffrey T.; Gee, James C. (2006)

Biventricular Myocardial Kinematics Based on Tagged MRI from Anatomical NURBS Models. - Tustison, Nicholas J.; Abendschein, Dana; Amini, Amir A. (2004)

Myocardial kinematics from tagged MRI based on a 4-D B-spline model. - Tustison, Nicholas J.; Dávila-Román, Victor G.; Amini, Amir A. (IEEE Trans. Biomed. Eng., 2003)

Myocardial Strain Imaging with Tagged MRI. - Tustison, Nicholas J.; Abendschein, Dana; Dávila-Román, Victor G.; Amini, Amir A. (2002)