Multimodal Patient Representation Learning with Missing Modalities and Labels - Zhenbang Wu; Anant Dadu; Nicholas J. Tustison; Brian B. Avants; Mike A. Nalls; Jimeng Sun; Faraz Faghri (The Twelfth International Conference on Learning Representations, ICLR 2024, Vienna, Austria, May 7-11, 2024, 2024)

Similarity-driven multi-view embeddings from high-dimensional biomedical data - Brian B. Avants; Nicholas J. Tustison; James R. Stone (Nat. Comput. Sci., 2021)

Publisher Correction: Similarity-driven multi-view embeddings from high-dimensional biomedical data - Brian B. Avants; Nicholas J. Tustison; James R. Stone (Nat. Comput. Sci., 2021)

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results - Raghav Mehta; Angelos Filos; Ujjwal Baid; Chiharu Sako; Richard McKinley; Michael Rebsamen; Katrin Dätwyler; Raphael Meier; Piotr Radojewski; Gowtham Krishnan Murugesan; Sahil S. Nalawade; Chandan Ganesh; et al. (CoRR, 2021)

Brain Tumor Segmentation Using an Ensemble of 3D U-Nets and Overall Survival Prediction Using Radiomic Features - Xue Feng; Nicholas J. Tustison; Sohil H. Patel; Craig H. Meyer (Frontiers Comput. Neurosci., 2020)

Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data - Joanne C. Beer; Nicholas J. Tustison; Philip A. Cook; Christos Davatzikos; Yvette I. Sheline; Russell T. Shinohara; Kristin A. Linn (NeuroImage, 2020)

Deep Volumetric Feature Encoding for Biomedical Images - Brian B. Avants; Elliot Greenblatt; Jacob Hesterman; Nicholas J. Tustison (Biomedical Image Registration - 9th International Workshop, WBIR 2020, Portorož, Slovenia, December 1-2, 2020, Proceedings, 2020)

Interpretable, similarity-driven multi-view embeddings from high-dimensional biomedical data - Brian B. Avants; Nicholas J. Tustison; James R. Stone (CoRR, 2020)

Multi-Site Meta-Analysis of Morphometry - Neda Jahanshad; Joshua Faskowitz; Gennady V. Roshchupkin; Derrek P. Hibar; Boris A. Gutman; Nicholas J. Tustison; Hieab H. H. Adams; Wiro J. Niessen; Meike W. Vernooij; Mohammad Arfan Ikram; Marcel P. Zwiers; Alejandro Arias-Vasquez; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Brain Tumor Segmentation with Uncertainty Estimation and Overall Survival Prediction - Xue Feng; Quan Dou; Nicholas J. Tustison; Craig H. Meyer (Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 5th International Workshop, BrainLes 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Revised Selected Papers, Part I, 2019)

Deformable Registration of Whole Brain Zebrafish Microscopy Using an Implementation of the Flash Algorithm Within Ants - Greg M. Fleishman; Miaomiao Zhang; Nicholas J. Tustison; Isabel Espinosa-Medina; Yu Mu; Khaled Khairy; Misha B. Ahrens (16th IEEE International Symposium on Biomedical Imaging, ISBI 2019, Venice, Italy, April 8-11, 2019, 2019)

Brain Tumor Segmentation Using an Ensemble of 3D U-Nets and Overall Survival Prediction Using Radiomic Features - Xue Feng; Nicholas J. Tustison; Craig H. Meyer (Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part II, 2018)

Brain Tumor Segmentation using an Ensemble of 3D U-Nets and Overall Survival Prediction using Radiomic Features - Xue Feng; Nicholas J. Tustison; Craig H. Meyer (CoRR, 2018)

Multivariate modeling using quantitative CT metrics may improve accuracy of diagnosis of bronchiolitis obliterans syndrome after lung transplantation - Eduardo Barbosa Jr.; Scott Simpson; James C. Lee; Nicholas J. Tustison; James C. Gee; Haochang Shou (Comput. Biol. Medicine, 2017)

An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI - Beau Pontre; Brett R. Cowan; Edward DiBella; Sancgeetha Kulaseharan; Devavrat Likhite; Nils Noorman; Lennart Tautz; Nicholas J. Tustison; Gert Wollny; Alistair A. Young; Avan Suinesiaputra (IEEE J. Biomed. Health Informatics, 2017)

Neuroinformatics and the The Insight ToolKit - Brian B. Avants; Hans J. Johnson; Nicholas J. Tustison (Frontiers Neuroinformatics, 2015)

Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR - Nicholas J. Tustison; K. L. Shrinidhi; Max Wintermark; Christopher R. Durst; Benjamin M. Kandel; James C. Gee; Murray C. Grossman; Brian B. Avants (Neuroinformatics, 2015)

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS) - Bjoern H. Menze; András Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin S. Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth R. Gerstner; et al. (IEEE Trans. Medical Imaging, 2015)

The Insight ToolKit image registration framework - Brian B. Avants; Nicholas J. Tustison; James C. Gee; Gang Song; Baohua Wu; Michael Stauffer (Frontiers Neuroinformatics, 2014)

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements - Nicholas J. Tustison; Philip A. Cook; Arno Klein; Gang Song; Sandhitsu R. Das; Jeffrey T. Duda; Benjamin M. Kandel; Niels van Strien; James R. Stone; James C. Gee; Brian B. Avants (NeuroImage, 2014)

Advanced Normalization Tools for Cardiac Motion Correction - Nicholas J. Tustison; Yang Yang; Michael Salerno (Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges - 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers, 2014)

Explicit B-spline regularization in diffeomorphic image registration - Nicholas J. Tustison; Brian B. Avants (Frontiers Neuroinformatics, 2013)

Diffeomorphic Directly Manipulated Free-Form Deformation Image Registration via Vector Field Flows - Nicholas J. Tustison; Brian B. Avants (Biomedical Image Registration - 5th International Workshop, WBIR 2012, Nashville, TN, USA, July 7-8, 2012. Proceedings, 2012)

A Unified Image Registration Framework for ITK - Brian B. Avants; Nicholas J. Tustison; Gang Song; Baohua Wu; Michael Stauffer; Matthew McCormick; Hans J. Johnson; James C. Gee (Biomedical Image Registration - 5th International Workshop, WBIR 2012, Nashville, TN, USA, July 7-8, 2012. Proceedings, 2012)

A reproducible evaluation of ANTs similarity metric performance in brain image registration - Brian B. Avants; Nicholas J. Tustison; Gang Song; Philip A. Cook; Arno Klein; James C. Gee (NeuroImage, 2011)

An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data - Brian B. Avants; Nicholas J. Tustison; Jue Wu; Philip A. Cook; James C. Gee (Neuroinformatics, 2011)

Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation - Nicholas J. Tustison; Brian B. Avants; Marcelo Siqueira; James C. Gee (IEEE Trans. Image Process., 2011)

Point Set Registration Using Havrda-Charvat-Tsallis Entropy Measures - Nicholas J. Tustison; Suyash P. Awate; Gang Song; Tessa Sundaram Cook; James C. Gee (IEEE Trans. Medical Imaging, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

N4ITK: Improved N3 Bias Correction - Nicholas J. Tustison; Brian B. Avants; Philip A. Cook; Yuanjie Zheng; Alexander Egan; Paul A. Yushkevich; James C. Gee (IEEE Trans. Medical Imaging, 2010)

Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging - Brian B. Avants; Philip A. Cook; Corey McMillan; Murray Grossman; Nicholas J. Tustison; Yuanjie Zheng; James C. Gee (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part I, 2010)

Directly Manipulated Free-Form Deformation Image Registration - Nicholas J. Tustison; Brian B. Avants; James C. Gee (IEEE Trans. Image Process., 2009)

A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration - Nicholas J. Tustison; Suyash P. Awate; Gang Song; Tessa Sundaram Cook; James C. Gee (Information Processing in Medical Imaging, 21st International Conference, IPMI 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings, 2009)

Computational Analysis of HRCT Images for Characterization and Differentiation of ILD and COPD - Gang Song; Eduardo Barbosa Jr.; Nicholas J. Tustison; James C. Gee; Warren B. Gefter; Maryl Kreider; Drew A. Torigian (Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009, 2009)

Topological Repairing of 3D Digital Images - Marcelo Siqueira; Longin Jan Latecki; Nicholas J. Tustison; Jean H. Gallier; James C. Gee (J. Math. Imaging Vis., 2008)

Point-set registration of tagged HE-3 images using a structurally-based Jensen-Shannon divergence measure within a deterministic annealing framework - Nicholas J. Tustison; Suyash P. Awate; Talissa A. Altes; James C. Gee; Jing Cai; G. Wilson Miller; Eduard E. de Lange; John P. Mugler III (Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008, 2008)

Improved FFD B-Spline Image Registration - Nicholas J. Tustison; Brian B. Avants; James C. Gee (IEEE 11th International Conference on Computer Vision, ICCV 2007, Rio de Janeiro, Brazil, October 14-20, 2007, 2007)

Pulmonary Kinematics from Hyperpolarized Helium-3 Tagged Magnetic Resonance Imaging - Nicholas J. Tustison; Talissa A. Altes; James C. Gee; Jing Cai; Eduard E. de Lange; John P. Mugler III (Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007, 2007)

How Do Registration Parameters Affect Quantitation of Lung Kinematics? - Tessa Sundaram Cook; Nicholas J. Tustison; Jürgen Biederer; Ralf Tetzlaff; James C. Gee (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I, 2007)

Biventricular myocardial strains via nonrigid registration of AnFigatomical NURBS models - Nicholas J. Tustison; Amir A. Amini (IEEE Trans. Medical Imaging, 2006)

Adaptive graph cuts with tissue priors for brain MRI segmentation - Zhuang Song; Nicholas J. Tustison; Brian B. Avants; James C. Gee (Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006, 2006)

Generalized n-D C\(^k\) B-Spline Scattered Data Approximation with Confidence Values - Nicholas J. Tustison; James C. Gee (Medical Imaging and Augmented Reality, MIAR 2006, Third International Workshop, Shanghai, China, August 17-18, 2006, Proceedings, 2006)

Integrated Graph Cuts for Brain MRI Segmentation - Zhuang Song; Nicholas J. Tustison; Brian B. Avants; James C. Gee (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006, 9th International Conference, Copenhagen, Denmark, October 1-6, 2006, Proceedings, Part II, 2006)

A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework - Nicholas J. Tustison; Brian B. Avants; Tessa A. Sundaram; Jeffrey T. Duda; James C. Gee (Biomedical Image Registration, Third International Workshop, WBIR 2006, Utrecht, The Netherlands, July 9-11, 2006, Proceedings, 2006)

Biventricular Myocardial Kinematics Based on Tagged MRI from Anatomical NURBS Models - Nicholas J. Tustison; Dana Abendschein; Amir A. Amini (2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June - 2 July 2004, Washington, DC, USA, 2004)

Myocardial kinematics from tagged MRI based on a 4-D B-spline model - Nicholas J. Tustison; Victor G. Dávila-Román; Amir A. Amini (IEEE Trans. Biomed. Eng., 2003)

Myocardial Strain Imaging with Tagged MRI - Nicholas J. Tustison; Dana Abendschein; Victor G. Dávila-Román; Amir A. Amini (16th International Conference on Pattern Recognition, ICPR 2002, Quebec, Canada, August 11-15, 2002, 2002)