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Herman J. C. Berendsen
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2010 – 2019
- 2013
- [i1]Nicolae Goga, Herman J. C. Berendsen, Svetlana Baoukina, Sunita Andreea Moga, George Dragoi, Anton Hadar, B. Paviloiu:
MPI Parallelization of Innovative DPD Thermostats. ICHI 2013: 476 - 2011
- [j10]Djurre H. De Jong, Lars V. Schäfer, Alex H. de Vries, Siewert J. Marrink, Herman J. C. Berendsen, Helmut Grubmüller:
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. J. Comput. Chem. 32(9): 1919-1928 (2011)
2000 – 2009
- 2005
- [j9]David van der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. C. Berendsen:
GROMACS: Fast, flexible, and free. J. Comput. Chem. 26(16): 1701-1718 (2005)
1990 – 1999
- 1999
- [j8]K. Anton Feenstra, Berk Hess, Herman J. C. Berendsen:
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems. J. Comput. Chem. 20(8): 786-798 (1999) - [j7]Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen:
Simulation of slow reaction with quantum character: Neutral hydrolysis of carboxylic ester. J. Comput. Chem. 20(8): 886-895 (1999) - [p1]Herman J. C. Berendsen:
Molecular Dynamics Simulations: The Limits and Beyond. Computational Molecular Dynamics 1999: 3-36 - 1997
- [j6]Daan M. F. van Aalten, Bert L. de Groot, John B. C. Findlay, Herman J. C. Berendsen, Andrea Amadei:
A comparison of techniques for calculating protein essential dynamics. J. Comput. Chem. 18(2): 169-181 (1997) - [j5]Berk Hess, Henk Bekker, Herman J. C. Berendsen, Johannes G. E. M. Fraaije:
LINCS: A linear constraint solver for molecular simulations. J. Comput. Chem. 18(12): 1463-1472 (1997) - 1996
- [j4]Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen:
Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator. J. Comput. Chem. 17(11): 1287-1295 (1996) - [c1]Rudi van Drunen, Cees van Teylingen, Marcel Kroontje, Herman J. C. Berendsen:
The Amfisbaena: A Parallel Sup computer System Based on i860 as a Generic Platform for Molecular Dynamics Simulation. PDPTA 1996: 637-644 - 1992
- [j3]René C. van Schaik, Wilfred F. van Gunsteren, Herman J. C. Berendsen:
Conformational search by potential energy annealing: Algorithm and application to cyclosporin A. J. Comput. Aided Mol. Des. 6(2): 97-112 (1992)
1980 – 1989
- 1988
- [j2]Herman J. C. Berendsen:
Dynamic simulation as an essential tool in molecular modeling. J. Comput. Aided Mol. Des. 2(3): 217-221 (1988) - 1987
- [j1]Wilfred F. van Gunsteren, Herman J. C. Berendsen:
Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry. J. Comput. Aided Mol. Des. 1(2): 171-176 (1987)
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