Fast zero-inflated negative binomial mixed modeling approach for analyzing longitudinal metagenomics data. - Zhang, Xinyan; Yi, Nengjun (Bioinform., 2020)

NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis. - Zhang, Xinyan; Yi, Nengjun (BMC Bioinform., 2020)

BhGLM: Bayesian hierarchical GLMs and survival models, with applications to genomics and epidemiology. - Yi, Nengjun; Tang, Zaixiang; Zhang, Xinyan; Guo, Boyi (Bioinform., 2019)

Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information. - Tang, Zaixiang; Lei, Shufeng; Zhang, Xinyan; Yi, Zixuan; Guo, Boyi; Chen, Jake Y.; Shen, Yueping; Yi, Nengjun (BMC Bioinform., 2019)

Group spike-and-slab lasso generalized linear models for disease prediction and associated genes detection by incorporating pathway information. - Tang, Zaixiang; Shen, Yueping; Li, Yan; Zhang, Xinyan; Wen, Jia; Qian, Chen'ao; Zhuang, Wenzhuo; Shi, Xinghua; Yi, Nengjun (Bioinform., 2018)

Pathway-structured predictive modeling for multi-level drug response in multiple myeloma. - Zhang, Xinyan; Li, Bingzong; Han, Huiying; Song, Sha; Xu, Hongxia; Yi, Zixuan; Hong, Yating; Zhuang, Wenzhuo; Yi, Nengjun (Bioinform., 2018)

The spike-and-slab lasso Cox model for survival prediction and associated genes detection. - Tang, Zaixiang; Shen, Yueping; Zhang, Xinyan; Yi, Nengjun (Bioinform., 2017)

Negative binomial mixed models for analyzing microbiome count data. - Zhang, Xinyan; Mallick, Himel; Tang, Zaixiang; Zhang, Lei; Cui, Xiangqin; Benson, Andrew K.; Yi, Nengjun (BMC Bioinform., 2017)

Bayesian group bridge for bi-level variable selection. - Mallick, Himel; Yi, Nengjun (Comput. Stat. Data Anal., 2017)

Deviance information criterion (DIC) in Bayesian multiple QTL mapping. - Shriner, Daniel; Yi, Nengjun (Comput. Stat. Data Anal., 2009)

R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses. - Yandell, Brian S.; Mehta, Tapan; Banerjee, Samprit; Shriner, Daniel; Venkataraman, Ramprasad; Moon, Jee Young; Neely, W. Whipple; Wu, Hao; Smith, Randy von; Yi, Nengjun (Bioinform., 2007)