Deciphering lineage-relevant gene regulatory networks during endoderm formation by InPheRNo-ChIP. - Su, Chen; Pastor, William A; Emad, Amin (Briefings Bioinform., 2024)

MARSY: a multitask deep-learning framework for prediction of drug combination synergy scores. - Khili, Mohamed Reda El; Memon, Safyan Aman; Emad, Amin (Bioinform., 2023)

Preclinical-to-clinical Anti-cancer Drug Response Prediction and Biomarker Identification Using TINDL. - Hostallero, David Earl; Wei, Lixuan; Wang, Liewei; Cairns, Junmei; Emad, Amin (Genom. Proteom. Bioinform., 2023)

Looking at the BiG picture: incorporating bipartite graphs in drug response prediction. - Hostallero, David Earl; Li, Yihui; Emad, Amin (Bioinform., 2022)

RAPPPID: towards generalizable protein interaction prediction with AWD-LSTM twin networks. - Szymborski, Joseph; Emad, Amin (Bioinform., 2022)

A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes' interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19. - Ding, Jun; Hostallero, David Earl; Khili, Mohamed Reda El; Fonseca, Gregory Joseph; Milette, Simon; Noorah, Nuzha; Guay-Belzile, Myriam; Spicer, Jonathan; Daneshtalab, Noriko; Sirois, Martin; Tremblay, Karine; Emad, Amin; et al. (PLoS Comput. Biol., 2021)

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples. - Huang, Edward W.; Bhope, Ameya; Lim, Jing; Sinha, Saurabh; Emad, Amin (PLoS Comput. Biol., 2020)

From Gene Expression to Drug Response: A Collaborative Filtering Approach. - Qian, Cheng; Sidiropoulos, Nicholas D.; Amiridi, Magda; Emad, Amin (2019)

REP: Predicting the Time-Course of Drug Sensitivity. - Qian, Cheng; Emad, Amin; Sidiropoulos, Nicholas D. (CoRR, 2019)

From Gene Expression to Drug Response: A Collaborative Filtering Approach. - Qian, Cheng; Sidiropoulos, Nicholas D.; Amiridi, Magda; Emad, Amin (CoRR, 2018)

A new correlation clustering method for cancer mutation analysis. - Hou, Jack P.; Emad, Amin; Puleo, Gregory J.; Ma, Jian; Milenkovic, Olgica (Bioinform., 2016)

Code Construction and Decoding Algorithms for Semi-Quantitative Group Testing With Nonuniform Thresholds. - Emad, Amin; Milenkovic, Olgica (IEEE Trans. Inf. Theory, 2016)

A new correlation clustering method for cancer mutation analysis. - Hou, Jack P.; Emad, Amin; Puleo, Gregory J.; Ma, Jian; Milenkovic, Olgica (CoRR, 2016)

New group testing paradigms: from practice to theory - Emad, Amin (2015)

Poisson Group Testing: A Probabilistic Model for Boolean Compressed Sensing. - Emad, Amin; Milenkovic, Olgica (IEEE Trans. Signal Process., 2015)

Semiquantitative Group Testing. - Emad, Amin; Milenkovic, Olgica (IEEE Trans. Inf. Theory, 2014)

Poisson group testing: A probabilistic model for nonadaptive streaming boolean compressed sensing. - Emad, Amin; Milenkovic, Olgica (2014)

Group testing for non-uniformly quantized adder channels. - Emad, Amin; Milenkovic, Olgica (2014)

Code Construction and Decoding Algorithms for Semi-Quantitative Group Testing with Nonuniform Thresholds. - Emad, Amin; Milenkovic, Olgica (CoRR, 2014)

Poisson Group Testing: A Probabilistic Model for Boolean Compressed Sensing. - Emad, Amin; Milenkovic, Olgica (CoRR, 2014)

MetaPar: Metagenomic sequence assembly via iterative reclassification. - Kim, Minji; Ligo, Jonathan G.; Emad, Amin; Farnoud, Farzad; Milenkovic, Olgica; Veeravalli, Venugopal V. (2013)

Compression of noisy signals with information bottlenecks. - Emad, Amin; Milenkovic, Olgica (2013)

MCUIUC - A new framework for metagenomic read compression. - Ligo, Jonathan G.; Kim, Minji; Emad, Amin; Milenkovic, Olgica; Veeravalli, Venugopal V. (2013)

Semi-quantitative group testing. - Emad, Amin; Milenkovic, Olgica (2012)

Causal compressive sensing for gene network inference. - Deng, Mo; Emad, Amin; Milenkovic, Olgica (2012)

Semi-Quantitative Group Testing - Emad, Amin; Milenkovic, Olgica (CoRR, 2012)

Semi-Quantitative Group Testing: a General Paradigm with Applications in Genotyping - Emad, Amin; Milenkovic, Olgica (CoRR, 2012)

On the Performance of an Automatic Frequency Control Loop in Dissimilar Fading Channels in the Presence of Interference. - Emad, Amin; Beaulieu, Norman C. (IEEE Trans. Commun., 2011)

Information Theoretic Bounds for Tensor Rank Minimization over Finite Fields. - Emad, Amin; Milenkovic, Olgica (2011)

Symmetric group testing and superimposed codes. - Emad, Amin; Shen, Jun; Milenkovic, Olgica (2011)

Information Theoretic Bounds for Tensor Rank Minimization over Finite Fields - Emad, Amin; Milenkovic, Olgica (CoRR, 2011)

Symmetric Group Testing and Superimposed Codes - Emad, Amin; Shen, Jun; Milenkovic, Olgica (CoRR, 2011)

Lower Bounds to the Performance of Bit Synchronization for Bandwidth Efficient Pulse-Shaping. - Emad, Amin; Beaulieu, Norman C. (IEEE Trans. Commun., 2010)

Performance of an AFC Loop in the Presence of a Single Interferer in a Fading Channel. - Emad, Amin; Beaulieu, Norman C. (IEEE Trans. Commun., 2010)

On the Performance of Bit-Synchronizers in an ISI Channel and a Related Lower Bound. - Emad, Amin; Beaulieu, Norman C. (2009)

Mean Time to Loss of Lock and Average Switching Rate of an Automatic Frequency Control Loop with an Interferer and Noise in a Fading Channel. - Emad, Amin; Beaulieu, Norman C. (2009)

Performance Measures of Automatic Frequency Control Corrupted by Interference and Fading in Dual Dissimilar Channels. - Emad, Amin; Beaulieu, Norman C. (2009)

Effect of a cochannel interferer on an automatic frequency control loop in fading channels. - Emad, Amin; Beaulieu, Norman C. (2009)