Deciphering lineage-relevant gene regulatory networks during endoderm formation by InPheRNo-ChIP - Chen Su; William A Pastor; Amin Emad (Briefings Bioinform., 2024)

MARSY: a multitask deep-learning framework for prediction of drug combination synergy scores - Mohamed Reda El Khili; Safyan Aman Memon; Amin Emad (Bioinform., 2023)

Preclinical-to-clinical Anti-cancer Drug Response Prediction and Biomarker Identification Using TINDL - David Earl Hostallero; Lixuan Wei; Liewei Wang; Junmei Cairns; Amin Emad (Genom. Proteom. Bioinform., 2023)

Looking at the BiG picture: incorporating bipartite graphs in drug response prediction - David Earl Hostallero; Yihui Li; Amin Emad (Bioinform., 2022)

RAPPPID: towards generalizable protein interaction prediction with AWD-LSTM twin networks - Joseph Szymborski; Amin Emad (Bioinform., 2022)

A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes' interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19 - Jun Ding; David Earl Hostallero; Mohamed Reda El Khili; Gregory Joseph Fonseca; Simon Milette; Nuzha Noorah; Myriam Guay-Belzile; Jonathan Spicer; Noriko Daneshtalab; Martin Sirois; Karine Tremblay; Amin Emad; et al. (PLoS Comput. Biol., 2021)

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples - Edward W. Huang; Ameya Bhope; Jing Lim; Saurabh Sinha; Amin Emad (PLoS Comput. Biol., 2020)

From Gene Expression to Drug Response: A Collaborative Filtering Approach - Cheng Qian; Nicholas D. Sidiropoulos; Magda Amiridi; Amin Emad (IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2019, Brighton, United Kingdom, May 12-17, 2019, 2019)

REP: Predicting the Time-Course of Drug Sensitivity - Cheng Qian; Amin Emad; Nicholas D. Sidiropoulos (CoRR, 2019)

From Gene Expression to Drug Response: A Collaborative Filtering Approach - Cheng Qian; Nicholas D. Sidiropoulos; Magda Amiridi; Amin Emad (CoRR, 2018)

A new correlation clustering method for cancer mutation analysis - Jack P. Hou; Amin Emad; Gregory J. Puleo; Jian Ma; Olgica Milenkovic (Bioinform., 2016)

Code Construction and Decoding Algorithms for Semi-Quantitative Group Testing With Nonuniform Thresholds - Amin Emad; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2016)

A new correlation clustering method for cancer mutation analysis - Jack P. Hou; Amin Emad; Gregory J. Puleo; Jian Ma; Olgica Milenkovic (CoRR, 2016)

New group testing paradigms: from practice to theory - Amin Emad (University of Illinois Urbana-Champaign, USA, 2015)

Poisson Group Testing: A Probabilistic Model for Boolean Compressed Sensing - Amin Emad; Olgica Milenkovic (IEEE Trans. Signal Process., 2015)

Semiquantitative Group Testing - Amin Emad; Olgica Milenkovic (IEEE Trans. Inf. Theory, 2014)

Poisson group testing: A probabilistic model for nonadaptive streaming boolean compressed sensing - Amin Emad; Olgica Milenkovic (IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2014, Florence, Italy, May 4-9, 2014, 2014)

Group testing for non-uniformly quantized adder channels - Amin Emad; Olgica Milenkovic (2014 IEEE International Symposium on Information Theory, Honolulu, HI, USA, June 29 - July 4, 2014, 2014)

Code Construction and Decoding Algorithms for Semi-Quantitative Group Testing with Nonuniform Thresholds - Amin Emad; Olgica Milenkovic (CoRR, 2014)

Poisson Group Testing: A Probabilistic Model for Boolean Compressed Sensing - Amin Emad; Olgica Milenkovic (CoRR, 2014)

MetaPar: Metagenomic sequence assembly via iterative reclassification - Minji Kim; Jonathan G. Ligo; Amin Emad; Farzad Farnoud; Olgica Milenkovic; Venugopal V. Veeravalli (IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013, Austin, TX, USA, December 3-5, 2013, 2013)

Compression of noisy signals with information bottlenecks - Amin Emad; Olgica Milenkovic (2013 IEEE Information Theory Workshop, ITW 2013, Sevilla, Spain, September 9-13, 2013, 2013)

MCUIUC - A new framework for metagenomic read compression - Jonathan G. Ligo; Minji Kim; Amin Emad; Olgica Milenkovic; Venugopal V. Veeravalli (2013 IEEE Information Theory Workshop, ITW 2013, Sevilla, Spain, September 9-13, 2013, 2013)

Semi-quantitative group testing - Amin Emad; Olgica Milenkovic (Proceedings of the 2012 IEEE International Symposium on Information Theory, ISIT 2012, Cambridge, MA, USA, July 1-6, 2012, 2012)

Causal compressive sensing for gene network inference - Mo Deng; Amin Emad; Olgica Milenkovic (IEEE Statistical Signal Processing Workshop, SSP 2012, Ann Arbor, MI, USA, August 5-8, 2012, 2012)

Semi-Quantitative Group Testing - Amin Emad; Olgica Milenkovic (CoRR, 2012)

Semi-Quantitative Group Testing: a General Paradigm with Applications in Genotyping - Amin Emad; Olgica Milenkovic (CoRR, 2012)

On the Performance of an Automatic Frequency Control Loop in Dissimilar Fading Channels in the Presence of Interference - Amin Emad; Norman C. Beaulieu (IEEE Trans. Commun., 2011)

Information Theoretic Bounds for Tensor Rank Minimization over Finite Fields - Amin Emad; Olgica Milenkovic (Proceedings of the Global Communications Conference, GLOBECOM 2011, 5-9 December 2011, Houston, Texas, USA, 2011)

Symmetric group testing and superimposed codes - Amin Emad; Jun Shen; Olgica Milenkovic (2011 IEEE Information Theory Workshop, ITW 2011, Paraty, Brazil, October 16-20, 2011, 2011)

Information Theoretic Bounds for Tensor Rank Minimization over Finite Fields - Amin Emad; Olgica Milenkovic (CoRR, 2011)

Symmetric Group Testing and Superimposed Codes - Amin Emad; Jun Shen; Olgica Milenkovic (CoRR, 2011)

Lower Bounds to the Performance of Bit Synchronization for Bandwidth Efficient Pulse-Shaping - Amin Emad; Norman C. Beaulieu (IEEE Trans. Commun., 2010)

Performance of an AFC Loop in the Presence of a Single Interferer in a Fading Channel - Amin Emad; Norman C. Beaulieu (IEEE Trans. Commun., 2010)

On the Performance of Bit-Synchronizers in an ISI Channel and a Related Lower Bound - Amin Emad; Norman C. Beaulieu (Proceedings of the Global Communications Conference, 2009. GLOBECOM 2009, Honolulu, Hawaii, USA, 30 November - 4 December 2009, 2009)

Mean Time to Loss of Lock and Average Switching Rate of an Automatic Frequency Control Loop with an Interferer and Noise in a Fading Channel - Amin Emad; Norman C. Beaulieu (Proceedings of IEEE International Conference on Communications, ICC 2009, Dresden, Germany, 14-18 June 2009, 2009)

Performance Measures of Automatic Frequency Control Corrupted by Interference and Fading in Dual Dissimilar Channels - Amin Emad; Norman C. Beaulieu (Proceedings of the 69th IEEE Vehicular Technology Conference, VTC Spring 2009, 26-29 April 2009, Hilton Diagonal Mar, Barcelona, Spain, 2009)

Effect of a cochannel interferer on an automatic frequency control loop in fading channels - Amin Emad; Norman C. Beaulieu (2009 IEEE Wireless Communications and Networking Conference, WCNC 2009, Proceedings, Budapest, Hungary, 5-8 April 2009, 2009)