ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. - Engreitz, Jesse M.; Chen, Rong; Morgan, Alexander A.; Dudley, Joel; Mallelwar, Rohan; Butte, Atul J. (Bioinform., 2011)

Content-based microarray search using differential expression profiles. - Engreitz, Jesse M.; Morgan, Alexander A.; Dudley, Joel; Chen, Rong; Thathoo, Rahul; Altman, Russ B.; Butte, Atul J. (BMC Bioinform., 2010)

Independent component analysis: Mining microarray data for fundamental human gene expression modules. - Engreitz, Jesse M.; Daigle, Bernie J., Jr.; Marshall, Jonathan J.; Altman, Russ B. (J. Biomed. Informatics, 2010)