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2020 – today
- 2024
[j25]Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier, Riccardo Pellarin:
AlignScape, displaying sequence similarity using self-organizing maps. Frontiers Bioinform. 4 (2024)- 2022
- [j24]Vincent Mallet
, Luis Checa Ruano, Alexandra Moine-Franel, Michael Nilges, Karen Druart, Guillaume Bouvier, Olivier Sperandio:
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions. Bioinform. 38(5): 1261-1268 (2022) - 2021
- [j23]Rachel Torchet, Karen Druart, Luis Checa Ruano, Alexandra Moine-Franel, Hélène Borges, Olivia Doppelt-Azeroual, Bryan Brancotte, Fabien Mareuil, Michael Nilges, Hervé Ménager, Olivier Sperandio:
The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators. Bioinform. 37(1): 89-96 (2021) - [j22]Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmström, Lars Malmström:
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology. PLoS Comput. Biol. 17(1) (2021) - 2020
- [j21]Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux:
ARIAweb: a server for automated NMR structure calculation. Nucleic Acids Res. 48(Webserver-Issue): W41-W47 (2020)
2010 – 2019
- 2019
- [j20]Carlile Lavor, Leo Liberti, Bruce Randall Donald, Bradley Worley, Benjamin Bardiaux, Thérèse E. Malliavin, Michael Nilges:
Minimal NMR distance information for rigidity of protein graphs. Discret. Appl. Math. 256: 91-104 (2019) - [j19]Damien Monet, Nathan Desdouits, Michael Nilges, Arnaud Blondel:
mkgridXf: Consistent Identification of Plausible Binding Sites Despite the Elusive Nature of Cavities and Grooves in Protein Dynamics. J. Chem. Inf. Model. 59(8): 3506-3518 (2019) - 2018
- [j18]Bradley Worley, Florent Delhommel, Florence Cordier, Thérèse E. Malliavin, Benjamin Bardiaux, Nicolas Wolff, Michael Nilges, Carlile Lavor, Leo Liberti:
Tuning interval Branch-and-Prune for protein structure determination. J. Glob. Optim. 72(1): 109-127 (2018) - 2016
- [j17]Isidro Cortes-Ciriano, Gerard J. P. van Westen, Guillaume Bouvier, Michael Nilges, John P. Overington, Andreas Bender, Thérèse E. Malliavin:
Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel. Bioinform. 32(1): 85-95 (2016) - [j16]Nathalie Duclert-Savatier, Guillaume Bouvier, Michael Nilges, Thérèse E. Malliavin:
Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa: d-Lac Ligase VanA. J. Chem. Inf. Model. 56(9): 1762-1775 (2016) - [j15]Simeon Carstens, Michael Nilges, Michael Habeck:
Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j14]Guillaume Bouvier, Nathan Desdouits, Mathias Ferber, Arnaud Blondel, Michael Nilges:
An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps. Bioinform. 31(9): 1490-1492 (2015) - [j13]Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin:
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. BMC Bioinform. 16: 23:1-23:15 (2015) - [j12]Emna Harigua-Souiai, Isidro Cortes-Ciriano, Nathan Desdouits, Thérèse E. Malliavin, Ikram Guizani, Michael Nilges, Arnaud Blondel, Guillaume Bouvier:
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis. BMC Bioinform. 16: 93:1-93:15 (2015) - 2014
- [j11]Guillaume Bouvier, Nathalie Duclert-Savatier, Nathan Desdouits, Djalal Meziane-Cherif, Arnaud Blondel, Patrice Courvalin, Michael Nilges, Thérèse E. Malliavin:
Functional Motions Modulating VanA Ligand Binding Unraveled by Self-Organizing Maps. J. Chem. Inf. Model. 54(1): 289-301 (2014) - [j10]Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali:
ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 42(Database-Issue): 336-346 (2014) - 2013
- [j9]Yannick G. Spill, Guillaume Bouvier, Michael Nilges:
A convective replica-exchange method for sampling new energy basins. J. Comput. Chem. 34(2): 132-140 (2013) - [j8]Yannick G. Spill, Guillaume Bouvier, Michael Nilges:
Erratum: A convective replica-exchange method for sampling new energy basins. J. Comput. Chem. 34(18): 1609 (2013) - [p1]Thérèse E. Malliavin, Antonio Mucherino, Michael Nilges:
Distance Geometry in Structural Biology: New Perspectives. Distance Geometry 2013: 329-350 - 2011
- [j7]Fabien Mareuil, Christophe Blanchet, Therese E. Malliavin, Michael Nilges:
Grid computing for improving conformational sampling in NMR structure calculation. Bioinform. 27(12): 1713-1714 (2011) - [c1]Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan:
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. SEA 2011: 206-217 - 2010
- [j6]David Giganti, Hélène Guillemain, Jean-Louis Spadoni, Michael Nilges, Jean-François Zagury, Matthieu Montès:
Comparative Evaluation of 3D Virtual Ligand Screening Methods: Impact of the Molecular Alignment on Enrichment. J. Chem. Inf. Model. 50(6): 992-1004 (2010)
2000 – 2009
- 2008
- [j5]Wolfgang Rieping, Michael Nilges, Michael Habeck:
ISD: a software package for Bayesian NMR structure calculation. Bioinform. 24(8): 1104-1105 (2008) - [j4]Phineus R. Markwick, Therese E. Malliavin, Michael Nilges:
Structural Biology by NMR: Structure, Dynamics, and Interactions. PLoS Comput. Biol. 4(9) (2008) - 2007
- [j3]Wolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Therese E. Malliavin, Michael Nilges:
ARIA2: Automated NOE assignment and data integration in NMR structure calculation. Bioinform. 23(3): 381-382 (2007) - [j2]Raik Grünberg, Michael Nilges, Johan Leckner:
Biskit - A software platform for structural bioinformatics. Bioinform. 23(6): 769-770 (2007) - 2003
- [j1]Jens P. Linge, Michael Habeck, Wolfgang Rieping, Michael Nilges:
ARIA: automated NOE assignment and NMR structure calculation. Bioinform. 19(2): 315-316 (2003)
Coauthor Index
aka: Thérèse E. Malliavin
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