BACH: Grand challenge on breast cancer histology images. - Aresta, Guilherme; Araújo, Teresa; Kwok, Scotty; Chennamsetty, Sai Saketh; P., Mohammed Safwan K.; Varghese, Alex; Marami, Bahram; Prastawa, Marcel; Chan, Monica; Donovan, Michael J.; Fernandez, Gerardo; Zeineh, Jack; et al. (Medical Image Anal., 2019)

Ensemble Network for Region Identification in Breast Histopathology Slides. - Marami, Bahram; Prastawa, Marcel; Chan, Monica; Donovan, Michael J.; Fernandez, Gerardo; Zeineh, Jack (2018)

BACH: Grand Challenge on Breast Cancer Histology Images. - Aresta, Guilherme; Araújo, Teresa; Kwok, Scotty; Chennamsetty, Sai Saketh; P., Mohammed Safwan K.; Varghese, Alex; Marami, Bahram; Prastawa, Marcel; Chan, Monica; Donovan, Michael J.; Fernandez, Gerardo; Zeineh, Jack; et al. (CoRR, 2018)

Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. - Bakas, Spyridon; Reyes, Mauricio; Jakab, András; Bauer, Stefan; Rempfler, Markus; Crimi, Alessandro; Shinohara, Russell Takeshi; Berger, Christoph; Ha, Sung Min; Rozycki, Martin; Prastawa, Marcel; Alberts, Esther; et al. (CoRR, 2018)

Geodesic shape regression with multiple geometries and sparse parameters. - Fishbaugh, James; Durrleman, Stanley; Prastawa, Marcel; Gerig, Guido (Medical Image Anal., 2017)

Data-Driven Rank Aggregation with Application to Grand Challenges. - Fishbaugh, James; Prastawa, Marcel; Wang, Bo; Reynolds, Patrick; Aylward, Stephen R.; Gerig, Guido (2017)

Modeling 4D pathological changes by leveraging normative models. - Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Saha, Avishek; Liu, Wei; Goh, Sheng-Yang M.; Vespa, Paul M.; Horn, John D. Van; Gerig, Guido (Comput. Vis. Image Underst., 2016)

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). - Menze, Bjoern H.; Jakab, András; Bauer, Stefan; Kalpathy-Cramer, Jayashree; Farahani, Keyvan; Kirby, Justin S.; Burren, Yuliya; Porz, Nicole; Slotboom, Johannes; Wiest, Roland; Lanczi, Levente; Gerstner, Elizabeth R.; et al. (IEEE Trans. Medical Imaging, 2015)

Automatic tissue segmentation of neonate brain MR Images with subject-specific atlases. - Cherel, Marie; Budin, François; Prastawa, Marcel; Gerig, Guido; Lee, Kevin; Buss, Claudia; Lyall, Amanda; Consing, Kirsten Zaldarriaga; Styner, Martin (2015)

Morphometry of anatomical shape complexes with dense deformations and sparse parameters. - Durrleman, Stanley; Prastawa, Marcel; Charon, Nicolas; Korenberg, Julie R.; Joshi, Sarang C.; Gerig, Guido; Trouvé, Alain (NeuroImage, 2014)

Geodesic regression of image and shape data for improved modeling of 4D trajectories. - Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley (2014)

4D active cut: An interactive tool for pathological anatomy modeling. - Wang, Bo; Liu, Wei; Prastawa, Marcel; Irimia, Andrei; Vespa, Paul M.; Horn, John D. Van; Fletcher, P. Thomas; Gerig, Guido (2014)

A joint framework for 4D segmentation and estimation of smooth temporal appearance changes. - Gao, Yang; Prastawa, Marcel; Styner, Martin; Piven, Joseph; Gerig, Guido (2014)

Subject-Specific Prediction Using Nonlinear Population Modeling: Application to Early Brain Maturation from DTI. - Sadeghi, Neda; Fletcher, P. Thomas; Prastawa, Marcel; Gilmore, John H.; Gerig, Guido (2014)

Joint Longitudinal Modeling of Brain Appearance in Multimodal MRI for the Characterization of Early Brain Developmental Processes. - Vardhan, Avantika; Prastawa, Marcel; Sadeghi, Neda; Vachet, Clement; Piven, Joseph; Gerig, Guido (2014)

Characterizing growth patterns in longitudinal MRI using image contrast. - Vardhan, Avantika; Prastawa, Marcel; Vachet, Clement; Piven, Joseph; Gerig, Guido (2014)

Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain. - Sadeghi, Neda; Prastawa, Marcel; Fletcher, P. Thomas; Wolff, Jason; Gilmore, John H.; Gerig, Guido (NeuroImage, 2013)

Geodesic Image Regression with a Sparse Parameterization of Diffeomorphisms. - Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley (2013)

Geodesic Shape Regression in the Framework of Currents. - Fishbaugh, James; Prastawa, Marcel; Gerig, Guido; Durrleman, Stanley (2013)

Analyzing imaging biomarkers for traumatic brain injury using 4d modeling of longitudinal MRI. - Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C.; Sadeghi, Neda; Vespa, Paul M.; Horn, John D. Van; Gerig, Guido (2013)

Modeling longitudinal MRI changes in populations using a localized, information-theoretic measure of contrast. - Vardhan, Avantika; Prastawa, Marcel; Sharma, Anuja; Piven, Joseph; Gerig, Guido (2013)

Multivariate modeling of longitudinal MRI in early brain development with confidence measures. - Sadeghi, Neda; Prastawa, Marcel; Fletcher, P. Thomas; Vachet, Clement; Wang, Bo; Gilmore, John H.; Gerig, Guido (2013)

Modeling 4D Changes in Pathological Anatomy Using Domain Adaptation: Analysis of TBI Imaging Using a Tumor Database. - Wang, Bo; Prastawa, Marcel; Saha, Avishek; Awate, Suyash P.; Irimia, Andrei; Chambers, Micah C.; Vespa, Paul M.; Horn, John D. Van; Pascucci, Valerio; Gerig, Guido (2013)

Segmentation of serial MRI of TBI patients using personalized atlas construction and topological change estimation. - Wang, Bo; Prastawa, Marcel; Awate, Suyash P.; Irimia, Andrei; Chambers, Micah C.; Vespa, Paul M.; Horn, John D. Van; Gerig, Guido (2012)

Quantifying regional growth patterns through longitudinal analysis of distances between multimodal MR intensity distributions. - Vardhan, Avantika; Prastawa, Marcel; Gouttard, Sylvain; Piven, Joseph; Gerig, Guido (2012)

Statistical growth modeling of longitudinal DT-MRI for regional characterization of early brain development. - Sadeghi, Neda; Prastawa, Marcel; Fletcher, P. Thomas; Gilmore, John H.; Lin, Weili; Gerig, Guido (2012)

Topology Preserving Atlas Construction from Shape Data without Correspondence Using Sparse Parameters. - Durrleman, Stanley; Prastawa, Marcel; Korenberg, Julie R.; Joshi, Sarang C.; Trouvé, Alain; Gerig, Guido (2012)

Brain Tumor Cell Density Estimation from Multi-modal MR Images Based on a Synthetic Tumor Growth Model. - Geremia, Ezequiel; Menze, Bjoern H.; Prastawa, Marcel; Weber, Marc-André; Criminisi, Antonio; Ayache, Nicholas (2012)

Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling. - Fishbaugh, James; Prastawa, Marcel; Durrleman, Stanley; Piven, Joseph; Gerig, Guido (2012)

A patient-specific segmentation framework for longitudinal MR images of traumatic brain injury. - Wang, Bo; Prastawa, Marcel; Irimia, Andrei; Chambers, Micah C.; Vespa, Paul M.; Horn, John D. Van; Gerig, Guido (2012)

Building spatiotemporal anatomical models using joint 4-D segmentation, registration, and subject-specific atlas estimation. - Prastawa, Marcel; Awate, Suyash P.; Gerig, Guido (2012)

Efficient Probabilistic and Geometric Anatomical Mapping Using Particle Mesh Approximation on GPUs. - Ha, Linh K.; Prastawa, Marcel; Gerig, Guido; Gilmore, John H.; Silva, Cláudio T.; Joshi, Sarang C. (Int. J. Biomed. Imaging, 2011)

Optimal Data-Driven Sparse Parameterization of Diffeomorphisms for Population Analysis. - Durrleman, Sandy; Prastawa, Marcel; Gerig, Guido; Joshi, Sarang C. (2011)

A new framework for analyzing white matter maturation in early brain development. - Prastawa, Marcel; Sadeghi, Neda; Gilmore, John H.; Lin, Weili; Gerig, Guido (2010)

Image Registration Driven by Combined Probabilistic and Geometric Descriptors. - Ha, Linh K.; Prastawa, Marcel; Gerig, Guido; Gilmore, John H.; Silva, Cláudio T.; Joshi, Sarang C. (2010)

Towards analysis of growth trajectory through multimodal longitudinal MR imaging. - Sadeghi, Neda; Prastawa, Marcel; Gilmore, John H.; Lin, Weili; Gerig, Guido (2010)

Simulation of brain tumors in MR images for evaluation of segmentation efficacy. - Prastawa, Marcel; Bullitt, Elizabeth; Gerig, Guido (Medical Image Anal., 2009)

Constrained Data Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract Diffusion Properties. - Gouttard, Sylvain; Prastawa, Marcel; Bullitt, Elizabeth; Lin, Weili; Goodlett, Casey; Gerig, Guido (2009)

Brain Lesion Segmentation through Physical Model Estimation. - Prastawa, Marcel; Gerig, Guido (2008)

Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures. - Fedorov, Andriy; Billet, Eric; Prastawa, Marcel; Gerig, Guido; Radmanesh, Alireza; Warfield, Simon K.; Kikinis, Ron; Chrisochoides, Nikos (2008)

Assessment of Reliability of Multi-site Neuroimaging Via Traveling Phantom Study. - Gouttard, Sylvain; Styner, Martin; Prastawa, Marcel; Piven, Joseph; Gerig, Guido (2008)

An MRI Segmentation Framework for Brains with Anatomical Deviations. - Prastawa, Marcel (2007)

Multi-modal image set registration and atlas formation. - Lorenzen, Peter; Prastawa, Marcel; Davis, Brad; Gerig, Guido; Bullitt, Elizabeth; Joshi, Sarang C. (Medical Image Anal., 2006)

Automatic segmentation of MR images of the developing newborn brain. - Prastawa, Marcel; Gilmore, John H.; Lin, Weili; Gerig, Guido (Medical Image Anal., 2005)

Synthetic Ground Truth for Validation of Brain Tumor MRI Segmentation. - Prastawa, Marcel; Bullitt, Elizabeth; Gerig, Guido (2005)

Effects of Healthy Aging Measured By Intracranial Compartment Volumes Using a Designed MR Brain Database. - Mortamet, Bénédicte; Zeng, Donglin; Gerig, Guido; Prastawa, Marcel; Bullitt, Elizabeth (2005)

A brain tumor segmentation framework based on outlier detection. - Prastawa, Marcel; Bullitt, Elizabeth; Ho, Sean; Gerig, Guido (Medical Image Anal., 2004)

Automatic Segmentation of Neonatal Brain MRI. - Prastawa, Marcel; Gilmore, John H.; Lin, Weili; Gerig, Guido (2004)

Robust Estimation for Brain Tumor Segmentation. - Prastawa, Marcel; Bullitt, Elizabeth; Ho, Sean; Gerig, Guido (2003)

Assessing Early Brain Development in Neonates by Segmentation of High-Resolution 3T MRI. - Gerig, Guido; Prastawa, Marcel; Lin, Weili; Gilmore, John H. (2003)