Experimental design and data analysis of Ago-RIP-Seq experiments for the identification of microRNA targets. - Tichy, Diana; Pickl, Julia Maria Anna; Benner, Axel; Sültmann, Holger (Briefings Bioinform., 2018)

pathClass: an R-package for integration of pathway knowledge into support vector machines for biomarker discovery. - Johannes, Marc; Fröhlich, Holger; Sültmann, Holger; Beißbarth, Tim (Bioinform., 2011)

Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer. - Gade, Stephan; Porzelius, Christine; Fälth, Maria; Brase, Jan C.; Wuttig, Daniela; Kuner, Ruprecht; Binder, Harald; Sültmann, Holger; Beißbarth, Tim (BMC Bioinform., 2011)

Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients. - Johannes, Marc; Brase, Jan C.; Fröhlich, Holger; Gade, Stephan; Gehrmann, Mathias C.; Fälth, Maria; Sültmann, Holger; Beißbarth, Tim (Bioinform., 2010)

Predicting pathway membership via domain signatures. - Fröhlich, Holger; Fellmann, Mark; Sültmann, Holger; Poustka, Annemarie; Beißbarth, Tim (Bioinform., 2008)

Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data. - Fröhlich, Holger; Fellmann, Mark; Sültmann, Holger; Poustka, Annemarie; Beißbarth, Tim (Bioinform., 2008)

Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer. - Buness, Andreas; Kuner, Ruprecht; Ruschhaupt, Markus; Poustka, Annemarie; Sültmann, Holger; Tresch, Achim (Bioinform., 2007)

Large scale statistical inference of signaling pathways from RNAi and microarray data. - Fröhlich, Holger; Fellmann, Mark; Sültmann, Holger; Poustka, Annemarie; Beißbarth, Tim (BMC Bioinform., 2007)

Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects. - Tresch, Achim; Beißbarth, Tim; Sültmann, Holger; Kuner, Ruprecht; Poustka, Annemarie; Buness, Andreas (J. Comput. Biol., 2007)

Estimating Large Scale Scale Signaling Networks through Nested Effects Models from Intervention Effects in Microarray Data. - Fröhlich, Holger; Fellmann, Mark; Sültmann, Holger; Poustka, Annemarie; Beißbarth, Tim (2007)

arrayMagic: two-colour cDNA microarray quality control, preprocessing. - Buness, Andreas; Huber, Wolfgang; Steiner, Klaus; Sültmann, Holger; Poustka, Annemarie (Bioinform., 2005)

Variance stabilization applied to microarray data calibration and to the quantification of differential expression. - Huber, Wolfgang; Heydebreck, Anja von; Sültmann, Holger; Poustka, Annemarie; Vingron, Martin (2002)