default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Jaime I. Dávila
@article{DBLP:journals/jcb/MitchellRYWD23,
author = {Audrey Mitchell and
Marco Ruiz and
Soua Yang and
Chen Wang and
Jaime I. D{\'{a}}vila},
title = {Excerno: Using Mutational Signatures in Sequencing Data to Filter
False Variants Caused by Clinical Archival},
journal = {J. Comput. Biol.},
volume = {30},
number = {4},
pages = {366--375},
year = {2023},
url = {https://doi.org/10.1089/cmb.2022.0394},
doi = {10.1089/CMB.2022.0394},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MitchellRYWD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/CordesD23,
author = {Julia Cordes and
Jaime I. D{\'{a}}vila},
editor = {Mukul S. Bansal and
Wei Chen and
Yury Khudyakov and
Ion I. Mandoiu and
Marmar Moussa and
Murray Patterson and
Sanguthevar Rajasekaran and
Pavel Skums and
Sharma V. Thankachan and
Alexander Zelikovsky},
title = {Cancer and Tissue Prediction Using Mutational Signatures in Highly
Mutated Cancers},
booktitle = {Computational Advances in Bio and Medical Sciences - 12th International
Conference, {ICCABS} 2023, Norman, OK, USA, December 11-13, 2023,
Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {14548},
pages = {65--74},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-82768-6\_6},
doi = {10.1007/978-3-031-82768-6\_6},
timestamp = {Tue, 01 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/CordesD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengDLLHW21,
author = {Tianshu Feng and
Jaime I. D{\'{a}}vila and
Yuanhang Liu and
Sangdi Lin and
Shuai Huang and
Chen Wang},
title = {Semi-Supervised Topological Analysis for Elucidating Hidden Structures
in High-Dimensional Transcriptome Datasets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1620--1631},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2950657},
doi = {10.1109/TCBB.2019.2950657},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengDLLHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MitchellRYWD21,
author = {Audrey Mitchell and
Marco Ruiz and
Soua Yang and
Chen Wang and
Jaime I. D{\'{a}}vila},
editor = {Mukul S. Bansal and
Ion I. Mandoiu and
Marmar Moussa and
Murray Patterson and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {Excerno: Filtering Mutations Caused by the Clinical Archival Process
in Sequencing Data},
booktitle = {Computational Advances in Bio and Medical Sciences: 11th International
Conference, {ICCABS} 2021, Virtual Event, December 16-18, 2021, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {13254},
pages = {29--37},
publisher = {Springer International Publishing},
year = {2021},
url = {https://doi.org/10.1007/978-3-031-17531-2\_3},
doi = {10.1007/978-3-031-17531-2\_3},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MitchellRYWD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/tf/18/BallaDNR18,
author = {Sudha Balla and
Jaime I. D{\'{a}}vila and
Marius Nicolae and
Sanguthevar Rajasekaran},
editor = {Teofilo F. Gonzalez},
title = {Approximation Algorithms for the Primer Selection, PlantedMotif Search,
and Related Problems},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics, Second Edition,
Volume 2: Contemporary and Emerging Applications},
publisher = {Chapman and Hall/CRC},
year = {2018},
timestamp = {Mon, 28 Oct 2019 16:49:19 +0100},
biburl = {https://dblp.org/rec/books/tf/18/BallaDNR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/Davila17,
author = {Jaime I. D{\'{a}}vila},
title = {Challenges of using RNA-seq in the clinical setting},
booktitle = {7th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2017, Orlando, FL, USA, October 19-21,
2017},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ICCABS.2017.8114283},
doi = {10.1109/ICCABS.2017.8114283},
timestamp = {Thu, 24 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/Davila17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/ChampionHYENLBN15,
author = {Mia D. Champion and
Ryan A. Hlady and
Huihuang Yan and
Jared Evans and
Jeff Nie and
Jeong{-}Heon Lee and
James M. Bogenberger and
Kannabiran Nandakumar and
Jaime I. D{\'{a}}vila and
Raymond M. Moore and
Asha A. Nair and
Daniel R. O'Brien and
Yuan{-}Xiao Zhu and
K. Martin Kort{\"{u}}m and
Tamas Ordog and
Zhiguo Zhang and
Richard W. Joseph and
A. Keith Stewart and
Jean{-}Pierre A. Kocher and
Eric Jonasch and
Keith D. Robertson and
Raoul Tibes and
Thai H. Ho},
editor = {Oscar Pastor and
Christine Sinoquet and
Ana L. N. Fred and
Hugo Gamboa and
Dirk Elias},
title = {Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation
Associated with Aberrant Transcript Splicing and RNA-editing},
booktitle = {{BIOINFORMATICS} 2015 - Proceedings of the International Conference
on Bioinformatics Models, Methods and Algorithms, Lisbon, Portugal,
12-15 January, 2015},
pages = {163--170},
publisher = {SciTePress},
year = {2015},
timestamp = {Thu, 21 Jan 2021 13:58:22 +0100},
biburl = {https://dblp.org/rec/conf/biostec/ChampionHYENLBN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangDBBWKSFNCTA14,
author = {Chen Wang and
Jaime I. D{\'{a}}vila and
Saurabh Baheti and
Aditya Bhagwate and
Xue Wang and
Jean{-}Pierre A. Kocher and
Susan L. Slager and
Andrew L. Feldman and
Anne J. Novak and
James R. Cerhan and
E. Aubrey Thompson and
Yan W. Asmann},
title = {RVboost: RNA-seq variants prioritization using a boosting method},
journal = {Bioinform.},
volume = {30},
number = {23},
pages = {3414--3416},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu577},
doi = {10.1093/BIOINFORMATICS/BTU577},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangDBBWKSFNCTA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KalariNBODBNTBDMSTAK14,
author = {Krishna R. Kalari and
Asha A. Nair and
Jaysheel D. Bhavsar and
Daniel R. O'Brien and
Jaime I. D{\'{a}}vila and
Matthew A. Bockol and
Jinfu J. Nie and
Xiaojia Tang and
Saurabh Baheti and
Jay B. Doughty and
Sumit Middha and
Hugues Sicotte and
E. Aubrey Thompson and
Yan W. Asmann and
Jean{-}Pierre A. Kocher},
title = {MAP-RSeq: Mayo Analysis Pipeline for {RNA} sequencing},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {224},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-224},
doi = {10.1186/1471-2105-15-224},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KalariNBODBNTBDMSTAK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DavilaBR07,
author = {Jaime I. D{\'{a}}vila and
Sudha Balla and
Sanguthevar Rajasekaran},
title = {Fast and Practical Algorithms for Planted (l, d) Motif Search},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {4},
pages = {544--552},
year = {2007},
url = {https://doi.org/10.1109/TCBB.2007.70241},
doi = {10.1109/TCBB.2007.70241},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DavilaBR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DavilaBR07,
author = {Jaime I. D{\'{a}}vila and
Sudha Balla and
Sanguthevar Rajasekaran},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {302--309},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_28},
doi = {10.1007/978-3-540-74126-8\_28},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DavilaBR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/BallaDR07,
author = {Sudha Balla and
Jaime I. D{\'{a}}vila and
Sanguthevar Rajasekaran},
editor = {Teofilo F. Gonzalez},
title = {Approximation Algorithms for the Primer Selection, Planted Motif Search,
and Related Problems},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics},
publisher = {Chapman and Hall/CRC},
year = {2007},
url = {https://doi.org/10.1201/9781420010749.ch75},
doi = {10.1201/9781420010749.CH75},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/crc/BallaDR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/RajasekaranD07,
author = {Sanguthevar Rajasekaran and
Jaime I. D{\'{a}}vila},
editor = {Sanguthevar Rajasekaran and
John H. Reif},
title = {Randomized Packet Routing, Selection, and Sorting on the {POPS} Network},
booktitle = {Handbook of Parallel Computing - Models, Algorithms and Applications},
publisher = {Chapman and Hall/CRC},
year = {2007},
url = {https://doi.org/10.1201/9781420011296.ch13},
doi = {10.1201/9781420011296.CH13},
timestamp = {Thu, 24 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/crc/RajasekaranD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/Davila06,
author = {Jaime I. D{\'{a}}vila and
Sanguthevar Rajasekaran},
title = {Extending Pattern Branching to Handle Challenging Instances},
booktitle = {Sixth {IEEE} International Symposium on BioInformatics and BioEngineering
{(BIBE} 2006), 16-18 October 2006, Arlington, Virginia, {USA}},
pages = {65--69},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/BIBE.2006.253317},
doi = {10.1109/BIBE.2006.253317},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibe/Davila06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/DavilaBR06,
author = {Jaime I. D{\'{a}}vila and
Sudha Balla and
Sanguthevar Rajasekaran},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Space and Time Efficient Algorithms for Planted Motif Search},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {822--829},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_110},
doi = {10.1007/11758525\_110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/DavilaBR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/DavilaR05,
author = {Jaime I. D{\'{a}}vila and
Sanguthevar Rajasekaran},
title = {Randomized Sorting On The Pops Network},
journal = {Int. J. Found. Comput. Sci.},
volume = {16},
number = {1},
pages = {105--116},
year = {2005},
url = {https://doi.org/10.1142/S0129054105002899},
doi = {10.1142/S0129054105002899},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijfcs/DavilaR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/RajasekaranD05,
author = {Sanguthevar Rajasekaran and
Jaime I. D{\'{a}}vila},
title = {Packet routing and selection on the {POPS} network},
journal = {J. Parallel Distributed Comput.},
volume = {65},
number = {8},
pages = {927--933},
year = {2005},
url = {https://doi.org/10.1016/j.jpdc.2005.03.003},
doi = {10.1016/J.JPDC.2005.03.003},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jpdc/RajasekaranD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ISCApdcs/DavilaR04,
author = {Jaime I. D{\'{a}}vila and
Sanguthevar Rajasekaran},
editor = {David A. Bader and
Ashfaq A. Khokhar},
title = {Randomized Sorting on the {POPS} Network},
booktitle = {Proceedings of the {ISCA} 17th International Conference on Parallel
and Distributed Computing Systems, September 15-17, 2004, The Canterbury
Hotel, San Francisco, California, {USA}},
pages = {45--50},
publisher = {{ISCA}},
year = {2004},
timestamp = {Mon, 09 Aug 2021 16:35:42 +0200},
biburl = {https://dblp.org/rec/conf/ISCApdcs/DavilaR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpads/RajasekaranD04,
author = {Sanguthevar Rajasekaran and
Jaime I. D{\'{a}}vila},
title = {A Fundamental Problem in Computer and Communication},
booktitle = {10th International Conference on Parallel and Distributed Systems,
{ICPADS} 2004, Newport Beach, CA, USA, July 7-9, 2004},
pages = {81},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.ieeecomputersociety.org/10.1109/ICPADS.2004.4},
doi = {10.1109/ICPADS.2004.4},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpads/RajasekaranD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2025-06-08 15:49 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
