General Theta function identities - Sun Kim (J. Comb. Theory, Ser. A, 2026)

Fate-tox: fragment attention transformer for E(3)-equivariant multi-organ toxicity prediction - Sumin Ha; Dongmin Bang; Sun Kim (J. Cheminformatics, 2025)

Residue-Level Multiview Deep Learning for ATP Binding Site Prediction and Applications in Kinase Inhibitors - Jaechan Lee; Dongmin Bang; Sun Kim (J. Chem. Inf. Model., 2025)

Dual Representation Learning for Predicting Drug-Side Effect Frequency Using Protein Target Information - Sungjoon Park; Sangseon Lee; Minwoo Pak; Sun Kim (IEEE J. Biomed. Health Informatics, 2025)

CheapNet: Cross-attention on Hierarchical representations for Efficient protein-ligand binding Affinity Prediction - Hyukjun Lim; Sun Kim; Sangseon Lee (The Thirteenth International Conference on Learning Representations, ICLR 2025, Singapore, April 24-28, 2025, 2025)

Taxonomy and Analysis of Sensitive User Queries in Generative AI Search System - Hwiyeol Jo; Taiwoo Park; Hyunwoo Lee; Nayoung Choi; Changbong Kim; Ohjoon Kwon; Donghyeon Jeon; Eui-Hyeon Lee; Kyoungho Shin; Sun Suk Lim; Kyungmi Kim; Jihye Lee; et al. (Findings of the Association for Computational Linguistics: NAACL 2025, Albuquerque, New Mexico, USA, April 29 - May 4, 2025, 2025)

MV-CLAM: Multi-View Molecular Interpretation with Cross-Modal Projection via Language Model - Sumin Ha; Jun Hyeong Kim; Yinhua Piao; Sun Kim (CoRR, 2025)

GraphT5: Unified Molecular Graph-Language Modeling via Multi-Modal Cross-Token Attention - Sangyeup Kim; Nayeon Kim; Yinhua Piao; Sun Kim (CoRR, 2025)

AI-driven Automation of End-to-end Assessment of Suturing Expertise - Atharva Deo; Nicholas Matsumoto; Sun Kim; Peter Wager; Randy G. Tsai; Aaron Denmark; Cherine Yang; Xi Li; Jay Moran; Miguel Hernandez; Andrew J. Hung (CoRR, 2025)

Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction - Dongmin Bang; Bonil Koo; Sun Kim (Bioinform., 2024)

Finding Highly Similar Regions of Genomic Sequences Through Homomorphic Encryption - Magsarjav Bataa; Siwoo Song; Kunsoo Park; Miran Kim; Jung Hee Cheon; Sun Kim (J. Comput. Biol., 2024)

DiSCO: Diffusion Schrödinger Bridge for Molecular Conformer Optimization - Danyeong Lee; Dohoon Lee; Dongmin Bang; Sun Kim (Thirty-Eighth AAAI Conference on Artificial Intelligence, AAAI 2024, Thirty-Sixth Conference on Innovative Applications of Artificial Intelligence, IAAI 2024, Fourteenth Symposium on Educational Advances in Artificial Intelligence, EAAI 2014, February 20-27, 2024, Vancouver, Canada, 2024)

Improving Out-of-Distribution Generalization in Graphs via Hierarchical Semantic Environments - Yinhua Piao; Sangseon Lee; Yijingxiu Lu; Sun Kim (IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2024, Seattle, WA, USA, June 16-22, 2024, 2024)

SLM as Guardian: Pioneering AI Safety with Small Language Model - Ohjoon Kwon; Donghyeon Jeon; Nayoung Choi; Gyu-Hwung Cho; Hwiyeol Jo; Changbong Kim; Hyunwoo Lee; Inho Kang; Sun Kim; Taiwoo Park (Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing: EMNLP 2024 - Industry Track, Miami, Florida, USA, November 12-16, 2024, 2024)

Enhancing Drug-Drug Interaction Prediction with Context-Aware Architecture - Yijingxiu Lu; Yinhua Piao; Sun Kim (The Second Tiny Papers Track at ICLR 2024, Tiny Papers @ ICLR 2024, Vienna, Austria, May 11, 2024, 2024)

Improving out-of-distribution generalization in graphs via hierarchical semantic environments - Yinhua Piao; Sangseon Lee; Yijingxiu Lu; Sun Kim (CoRR, 2024)

Taxonomy and Analysis of Sensitive User Queries in Generative AI Search - Hwiyeol Jo; Taiwoo Park; Nayoung Choi; Changbong Kim; Ohjoon Kwon; Donghyeon Jeon; Hyunwoo Lee; Eui-Hyeon Lee; Kyoungho Shin; Sun Suk Lim; Kyungmi Kim; Jihye Lee; et al. (CoRR, 2024)

SLM as Guardian: Pioneering AI Safety with Small Language Models - Ohjoon Kwon; Donghyeon Jeon; Nayoung Choi; Gyu-Hwung Cho; Changbong Kim; Hyunwoo Lee; Inho Kang; Sun Kim; Taiwoo Park (CoRR, 2024)

Improved drug response prediction by drug target data integration via network-based profiling - Minwoo Pak; Sangseon Lee; Inyoung Sung; Bonil Koo; Sun Kim (Briefings Bioinform., 2023)

A model-agnostic framework to enhance knowledge graph-based drug combination prediction with drug-drug interaction data and supervised contrastive learning - Jeonghyeon Gu; Dongmin Bang; Jungseob Yi; Sangseon Lee; Dong Kyu Kim; Sun Kim (Briefings Bioinform., 2023)

GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype - Dabin Jeong; Bonil Koo; Minsik Oh; Tae-Bum Kim; Sun Kim (Bioinform., 2023)

Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments - Dohoon Lee; Bonil Koo; Jeewon Yang; Sun Kim (PLoS Comput. Biol., 2023)

Clinical Note Owns its Hierarchy: Multi-Level Hypergraph Neural Networks for Patient-Level Representation Learning - Nayeon Kim; Yinhua Piao; Sun Kim (Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), ACL 2023, Toronto, Canada, July 9-14, 2023, 2023)

Deep learning-based survival prediction using DNA methylation-derived 3D genomic information - Jeewon Yang; Dohoon Lee; Bonil Koo; Dabin Jeong; Sun Kim (Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2023, Houston, TX, USA, September 3-6, 2023, 2023)

Clinical Note Owns its Hierarchy: Multi-Level Hypergraph Neural Networks for Patient-Level Representation Learning - Nayeon Kim; Yinhua Piao; Sun Kim (CoRR, 2023)

AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning - Inyoung Sung; Sangseon Lee; Minwoo Pak; Yunyol Shin; Sun Kim (BMC Bioinform., 2022)

Generative Modeling to Predict Multiple Suitable Conditions for Chemical Reactions - Youngchun Kwon; Sun Kim; Youn-Suk Choi; Seokho Kang (J. Chem. Inf. Model., 2022)

MLDEG: A Machine Learning Approach to Identify Differentially Expressed Genes Using Network Property and Network Propagation - Ji Hwan Moon; Sangseon Lee; Minwoo Pak; Benjamin Hur; Sun Kim (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Sparse Structure Learning via Graph Neural Networks for Inductive Document Classification - Yinhua Piao; Sangseon Lee; Dohoon Lee; Sun Kim (Thirty-Sixth AAAI Conference on Artificial Intelligence, AAAI 2022, Thirty-Fourth Conference on Innovative Applications of Artificial Intelligence, IAAI 2022, The Twelveth Symposium on Educational Advances in Artificial Intelligence, EAAI 2022 Virtual Event, February 22 - March 1, 2022, 2022)

Embedding of FDA Approved Drugs in Chemical Space Using Cascade Autoencoder with Metric Learning - Jungwoo Kim; Sangsoo Lim; Sangseon Lee; Changyun Cho; Sun Kim (IEEE International Conference on Big Data and Smart Computing, BigComp 2022, Daegu, Korea, Republic of, January 17-20, 2022, 2022)

Triangular Contrastive Learning on Molecular Graphs - MinGyu Choi; Wonseok Shin; Yijingxiu Lu; Sun Kim (CoRR, 2022)

SPGP: Structure Prototype Guided Graph Pooling - Sangseon Lee; Dohoon Lee; Yinhua Piao; Sun Kim (CoRR, 2022)

Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations - Minsik Oh; Sungjoon Park; Sun Kim; Heejoon Chae (Briefings Bioinform., 2021)

Erratum to: Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations - Minsik Oh; Sungjoon Park; Sun Kim; Heejoon Chae (Briefings Bioinform., 2021)

Towards multi-omics characterization of tumor heterogeneity: a comprehensive review of statistical and machine learning approaches - Dohoon Lee; Youngjune Park; Sun Kim (Briefings Bioinform., 2021)

mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering - Hyejin Kang; Hongryul Ahn; Kyuri Jo; Minsik Oh; Sun Kim (Bioinform., 2021)

BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud - Sungjoon Park; Dohoon Lee; Youngkuk Kim; Sangsoo Lim; Heejoon Chae; Sun Kim (Bioinform., 2021)

A generalization of the modular equations of higher degrees - Sun Kim (J. Comb. Theory A, 2021)

Ranked k-Spectrum Kernel for Comparative and Evolutionary Comparison of Exons, Introns, and CpG Islands - Sangseon Lee; Taeheon Lee; Yung-Kyun Noh; Sun Kim (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

TeamTat: A Collaborative Text Annotation Tool for Creating Gold-Standard Corpora - Rezarta Islamaj; Dongseop Kwon; Sun Kim; Zhiyong Lu (AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021 - November 3, 2021, 2021)

A probabilistic model for pathway-guided gene set selection - Inyoung Kim; Sangseon Lee; Youngkuk Kim; Hugh Namkoong; Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Houston, TX, USA, December 9-12, 2021, 2021)

IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data - Hongryul Ahn; Inuk Jung; Heejoon Chae; Minsik Oh; Inyoung Kim; Sun Kim (2021 IEEE International Conference on Big Data (Big Data), Orlando, FL, USA, December 15-18, 2021, 2021)

Handling Long-Tail Queries with Slice-Aware Conversational Systems - Cheng Wang; Sun Kim; Taiwoo Park; Sajal Choudhary; Sunghyun Park; Young-Bum Kim; Ruhi Sarikaya; Sungjin Lee (CoRR, 2021)

Sparse Structure Learning via Graph Neural Networks for Inductive Document Classification - Yinhua Piao; Sangseon Lee; Dohoon Lee; Sun Kim (CoRR, 2021)

Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data - Sangsoo Lim; Sangseon Lee; Inuk Jung; SungMin Rhee; Sun Kim (Briefings Bioinform., 2020)

Cancer subtype classification and modeling by pathway attention and propagation - Sangseon Lee; Sangsoo Lim; Taeheon Lee; Inyoung Sung; Sun Kim (Bioinform., 2020)

Better synonyms for enriching biomedical search - Lana Yeganova; Sun Kim; Qingyu Chen; Grigory Balasanov; W. John Wilbur; Zhiyong Lu (J. Am. Medical Informatics Assoc., 2020)

Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records - Qingyu Chen; Jingcheng Du; Sun Kim; W. John Wilbur; Zhiyong Lu (BMC Medical Informatics Decis. Mak., 2020)

TeamTat: a collaborative text annotation tool - Rezarta Islamaj Dogan; Dongseop Kwon; Sun Kim; Zhiyong Lu (Nucleic Acids Res., 2020)

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale - Qingyu Chen; Kyubum Lee; Shankai Yan; Sun Kim; Chih-Hsuan Wei; Zhiyong Lu (PLoS Comput. Biol., 2020)

Homomorphic Computation of Local Alignment - Magsarjav Bataa; Siwoo Song; Kunsoo Park; Miran Kim; Jung Hee Cheon; Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, Virtual Event, South Korea, December 16-19, 2020, 2020)

TeamTat: a collaborative text annotation tool - Rezarta Islamaj Dogan; Dongseop Kwon; Sun Kim; Zhiyong Lu (CoRR, 2020)

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine - Rezarta Islamaj Dogan; Sun Kim; Andrew Chatr-aryamontri; Chih-Hsuan Wei; Donald C. Comeau; Rui Antunes; Sérgio Matos; Qingyu Chen; Aparna Elangovan; Nagesh C. Panyam; Karin Verspoor; Hongfang Liu; et al. (Database J. Biol. Databases Curation, 2019)

PRISM: methylation pattern-based, reference-free inference of subclonal makeup - Do-Hoon Lee; Sangseon Lee; Sun Kim (Bioinform., 2019)

CaPSSA: visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data - Yeongjun Jang; Jihae Seo; Insu Jang; Byungwook Lee; Sun Kim; Sanghyuk Lee (Bioinform., 2019)

HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis - Hongryul Ahn; Inuk Jung; Heejoon Chae; Dongwon Kang; Woosuk Jung; Sun Kim (BMC Bioinform., 2019)

Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments - Benjamin Hur; Dongwon Kang; Sangseon Lee; Ji Hwan Moon; Gung Lee; Sun Kim (BMC Bioinform., 2019)

A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side - Sungjoon Park; Minsu Kim; Seokjun Seo; Seungwan Hong; Kyoohyung Han; Keewoo Lee; Jung Hee Cheon; Sun Kim (BMC Genom., 2019)

LitSense: making sense of biomedical literature at sentence level - Alexis Allot; Qingyu Chen; Sun Kim; Roberto Vera Alvarez; Donald C. Comeau; W. John Wilbur; Zhiyong Lu (Nucleic Acids Res., 2019)

Evaluation of Five Sentence Similarity Models on Electronic Medical Records - Qingyu Chen; Jingcheng Du; Sun Kim; W. John Wilbur; Zhiyong Lu (Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2019, Niagara Falls, NY, USA, September 7-10, 2019, 2019)

DeepFunNet: Deep Learning for Gene Functional Similarity Network Construction - Hongryul Ahn; Seunghyun Son; Sun Kim (IEEE International Conference on Big Data and Smart Computing, BigComp 2019, Kyoto, Japan, February 27 - March 2, 2019, 2019)

Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records - Qingyu Chen; Jingcheng Du; Sun Kim; W. John Wilbur; Zhiyong Lu (CoRR, 2019)

BioConceptVec: creating and evaluating literature-based biomedical concept embeddings on a large scale - Qingyu Chen; Kyubum Lee; Shankai Yan; Sun Kim; Chih-Hsuan Wei; Zhiyong Lu (CoRR, 2019)

DeepFam: deep learning based alignment-free method for protein family modeling and prediction - Seokjun Seo; Minsik Oh; Youngjune Park; Sun Kim (Bioinform., 2018)

BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways - Inyoung Kim; Saemi Choi; Sun Kim (BMC Bioinform., 2018)

Discovering themes in biomedical literature using a projection-based algorithm - Lana Yeganova; Sun Kim; Grigory Balasanov; W. John Wilbur (BMC Bioinform., 2018)

The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature - Inuk Jung; Hyejin Kang; Jang Uk Kim; Hyeonsook Chang; Sun Kim; Woosuk Jung (BMC Syst. Biol., 2018)

Cloud-BS: A MapReduce-based bisulfite sequencing aligner on cloud - Joungmin Choi; Yoonjae Park; Sun Kim; Heejoon Chae (J. Bioinform. Comput. Biol., 2018)

ezTag: tagging biomedical concepts via interactive learning - Dongseop Kwon; Sun Kim; Chih-Hsuan Wei; Robert Leaman; Zhiyong Lu (Nucleic Acids Res., 2018)

The Circle Problem of Gauss and the Divisor Problem of Dirichlet - Still Unsolved - Bruce C. Berndt; Sun Kim; Alexandru Zaharescu (Am. Math. Mon., 2018)

Editorial for Selected Papers of a Joint Conferences, Genome Informatics Workshop/International Conference on Bioinformatics (GIW/InCoB) 2015 - Sun Kim (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Sentence Similarity Measures Revisited: Ranking Sentences in PubMed Documents - Qingyu Chen; Sun Kim; W. John Wilbur; Zhiyong Lu (Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2018, Washington, DC, USA, August 29 - September 01, 2018, 2018)

HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in Arabidopsis - Hongryul Ahn; Inuk Jung; Heejoon Chae; Dongwon Kang; Woosuk Jung; Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018, Madrid, Spain, December 3-6, 2018, 2018)

Identifying stress-related genes and predicting stress types in Arabidopsis using logical correlation layer and CMCL loss through time-series data - Dongwon Kang; Hongryul Ahn; Sangseon Lee; Chai-Jin Lee; Jihye Hur; Woosuk Jung; Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018, Madrid, Spain, December 3-6, 2018, 2018)

Hybrid Approach of Relation Network and Localized Graph Convolutional Filtering for Breast Cancer Subtype Classification - SungMin Rhee; Seokjun Seo; Sun Kim (Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, IJCAI 2018, July 13-19, 2018, Stockholm, Sweden, 2018)

A Fast Deep Learning Model for Textual Relevance in Biomedical Information Retrieval - Sunil Mohan; Nicolas Fiorini; Sun Kim; Zhiyong Lu (Proceedings of the 2018 World Wide Web Conference on World Wide Web, WWW 2018, Lyon, France, April 23-27, 2018, 2018)

A Fast Deep Learning Model for Textual Relevance in Biomedical Information Retrieval - Sunil Mohan; Nicolas Fiorini; Sun Kim; Zhiyong Lu (CoRR, 2018)

The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions - Rezarta Islamaj Dogan; Sun Kim; Andrew Chatr-aryamontri; Christie S. Chang; Rose Oughtred; Jennifer M. Rust; W. John Wilbur; Donald C. Comeau; Kara Dolinski; Mike Tyers (Database J. Biol. Databases Curation, 2017)

TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes - Inuk Jung; Kyuri Jo; Hyejin Kang; Hongryul Ahn; Youngjae Yu; Sun Kim (Bioinform., 2017)

PINTnet: construction of condition-specific pathway interaction network by computing shortest paths on weighted PPI - Ji Hwan Moon; Sangsoo Lim; Kyuri Jo; Sangseon Lee; Seokjun Seo; Sun Kim (BMC Syst. Biol., 2017)

Iterative segmented least square method for functional microRNA-mRNA module discovery in breast cancer - SungMin Rhee; Sangsoo Lim; Sun Kim (Int. J. Data Min. Bioinform., 2017)

Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents - Sun Kim; Nicolas Fiorini; W. John Wilbur; Zhiyong Lu (J. Biomed. Informatics, 2017)

Flow maximization analysis of cell cycle pathway activation status in breast cancer subtypes - Sangseon Lee; Ji Hwan Moon; Youngjune Park; Sun Kim (2017 IEEE International Conference on Big Data and Smart Computing, BigComp 2017, Jeju Island, South Korea, February 13-16, 2017, 2017)

Integration of heterogeneous time series gene expression data by clustering on time dimension - Hongryul Ahn; Heejoon Chae; Woosuk Jung; Sun Kim (2017 IEEE International Conference on Big Data and Smart Computing, BigComp 2017, Jeju Island, South Korea, February 13-16, 2017, 2017)

BioCreative VI Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations - Rezarta Islamaj Dogan; Andrew Chatr-aryamontri; Sun Kim; Chih-Hsuan Wei; Yifan Peng; Donald C. Comeau; Zhiyong Lu (BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017)

Deep Learning for Biomedical Information Retrieval: Learning Textual Relevance from Click Logs - Sunil Mohan; Nicolas Fiorini; Sun Kim; Zhiyong Lu (BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017)

Hybrid Approach of Relation Network and Localized Graph Convolutional Filtering for Breast Cancer Subtype Classification - SungMin Rhee; Seokjun Seo; Sun Kim (CoRR, 2017)

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID - Sun Kim; Rezarta Islamaj Dogan; Andrew Chatr-aryamontri; Christie S. Chang; Rose Oughtred; Jennifer M. Rust; Riza Batista-Navarro; Jacob Carter; Sophia Ananiadou; Sérgio Matos; André Santos; David Campos; et al. (Database J. Biol. Databases Curation, 2016)

BioC viewer: a web-based tool for displaying and merging annotations in BioC - Soo-Yong Shin; Sun Kim; W. John Wilbur; Dongseop Kwon (Database J. Biol. Databases Curation, 2016)

Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways - Kyuri Jo; Inuk Jung; Ji Hwan Moon; Sun Kim (Bioinform., 2016)

Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms - Sun Kim; Lana Yeganova; W. John Wilbur (Bioinform., 2016)

Prioritizing biological pathways by recognizing context in time-series gene expression data - Jusang Lee; Kyuri Jo; Sunwon Lee; Jaewoo Kang; Sun Kim (BMC Bioinform., 2016)

RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data - Min-Su Kim; Benjamin Hur; Sun Kim (BMC Genom., 2016)

Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice - Inuk Jung; Hongryul Ahn; Seon-Ju Shin; Jukon Kim; Hawk-Bin Kwon; Woosuk Jung; Sun Kim (BMC Syst. Biol., 2016)

Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines - Heejoon Chae; Sangseon Lee; Kenneth P. Nephew; Sun Kim (BMC Syst. Biol., 2016)

Information theoretic sub-network mining characterizes breast cancer subtypes in terms of cancer core mechanisms - Jinwoo Park; Benjamin Hur; SungMin Rhee; Sangsoo Lim; Min-Su Kim; Kwangsoo Kim; Wonshik Han; Sun Kim (J. Bioinform. Comput. Biol., 2016)

Networks and models for the integrated analysis of multi omics data - Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016, Shenzhen, China, December 15-18, 2016, 2016)

Iterative segmented least square method for functional microRNA-mRNA module discovery in breast cancer - SungMin Rhee; Sangsoo Lim; Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016, Shenzhen, China, December 15-18, 2016, 2016)

PubTermVariants: biomedical term variants and their use for PubMed search - Lana Yeganova; Won Kim; Sun Kim; Rezarta Islamaj Dogan; Wanli Liu; Donald C. Comeau; Zhiyong Lu; W. John Wilbur (Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016, 2016)

BioCconvert: A Conversion Tool Between BioC and PubAnnotation - Donald C. Comeau; Rezarta Islamaj Dogan; Sun Kim; Chih-Hsuan Wei; W. John Wilbur; Zhiyong Lu (Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016, 2016)

Bridging the Gap: a Semantic Similarity Measure between Queries and Documents - Sun Kim; W. John Wilbur; Zhiyong Lu (CoRR, 2016)

BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data - Heejoon Chae; SungMin Rhee; Kenneth P. Nephew; Sun Kim (Bioinform., 2015)

Identifying named entities from PubMed®; for enriching semantic categories - Sun Kim; Zhiyong Lu; W. John Wilbur (BMC Bioinform., 2015)

Weighted divisor sums and Bessel function series, V - Bruce C. Berndt; Sun Kim; Alexandru Zaharescu (J. Approx. Theory, 2015)

Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach - Sun Kim; Haibin Liu; Lana Yeganova; W. John Wilbur (J. Biomed. Informatics, 2015)

Summarizing Topical Contents from PubMed Documents Using a Thematic Analysis - Sun Kim; Lana Yeganova; W. John Wilbur (Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, EMNLP 2015, Lisbon, Portugal, September 17-21, 2015, 2015)

Assisting manual literature curation for protein-protein interactions using BioQRator - Dongseop Kwon; Sun Kim; Soo-Yong Shin; Andrew Chatr-aryamontri; W. John Wilbur (Database J. Biol. Databases Curation, 2014)

Retro: concept-based clustering of biomedical topical sets - Lana Yeganova; Won Kim; Sun Kim; W. John Wilbur (Bioinform., 2014)

piClust: A density based piRNA clustering algorithm - Inuk Jung; Jong Chan Park; Sun Kim (Comput. Biol. Chem., 2014)

Author name disambiguation for PubMed - Wanli Liu; Rezarta Islamaj Dogan; Sun Kim; Donald C. Comeau; Won Kim; Lana Yeganova; Zhiyong Lu; W. John Wilbur (J. Assoc. Inf. Sci. Technol., 2014)

Partitions with part difference conditions and Bressoud's conjecture - Sun Kim; Ae Ja Yee (J. Comb. Theory A, 2014)

Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach - Sun Kim; Haibin Liu; Lana Yeganova; W. John Wilbur (AMIA 2014, American Medical Informatics Association Annual Symposium, Washington, DC, USA, November 15-19, 2014, 2014)

An algorithm for identifying differentially expressed genes in multiclass RNA-seq samples - Jaehyun An; Kwangsoo Kim; Sun Kim (International Conference on Big Data and Smart Computing, BIGCOMP 2014, Bangkok, Thailand, January 15-17, 2014, 2014)

Integrated profiling of three dimensional cell culture models and 3D microscopy - Cemal Çagatay Bilgin; Sun Kim; Elle Leung; Hang Chang; Bahram Parvin (Bioinform., 2013)

Bio and health informatics meets cloud : BioVLab as an example - Heejoon Chae; Inuk Jung; Hyungro Lee; Suresh Marru; Seong-Whan Lee; Sun Kim (Health Inf. Sci. Syst., 2013)

Designing discriminative spatial filter vectors in motor imagery brain-computer interface - Kyeong-Yeon Lee; Sun Kim (Int. J. Imaging Syst. Technol., 2013)

Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences - Jaehyun An; Kwangsoo Kim; SungMin Rhee; Heejoon Chae; Kenneth P. Nephew; Sun Kim (J. Bioinform. Comput. Biol., 2013)

The Rogers-Ramanujan-Gordon identities, the generalized Göllnitz-Gordon identities, and parity questions - Sun Kim; Ae Ja Yee (J. Comb. Theory A, 2013)

Towards simultaneous clustering and motif-modeling for a large number of protein family - Young Joon Yoo; Tushar Sandhan; Jin Young Choi; Sun Kim (2013 IEEE International Conference on Bioinformatics and Biomedicine, Shanghai, China, December 18-21, 2013, 2013)

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information - Sun Kim; Won Kim; Chih-Hsuan Wei; Zhiyong Lu; W. John Wilbur (Database J. Biol. Databases Curation, 2012)

PIE the search: searching PubMed literature for protein interaction information - Sun Kim; Dongseop Kwon; Soo-Yong Shin; W. John Wilbur (Bioinform., 2012)

GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis - Vikas Rao Pejaver; Jaehyun An; SungMin Rhee; Ankita Bhan; Jeong-Hyeon Choi; Boshu Liu; Heewook Lee; Pamela J. Brown; David Kysela; Yves V. Brun; Sun Kim (Bioinform., 2012)

Thematic clustering of text documents using an EM-based approach - Sun Kim; W. John Wilbur (J. Biomed. Semant., 2012)

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters - Youngik Yang; Kenneth P. Nephew; Sun Kim (BMC Bioinform., 2012)

Introduction - Sun Kim; Wei Wang (J. Bioinform. Comput. Biol., 2012)

Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers - Sun Kim; Won Kim; Donald C. Comeau; W. John Wilbur (Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012, 2012)

Discriminative spatial pattern vectors selection for motor imagery classification - Kyeong-Yeon Lee; Sun Kim (Proceedings of the IEEE International Conference on Systems, Man, and Cybernetics, SMC 2012, Seoul, Korea (South), October 14-17, 2012, 2012)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text - Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; et al. (BMC Bioinform., 2011)

Classifying protein-protein interaction articles using word and syntactic features - Sun Kim; W. John Wilbur (BMC Bioinform., 2011)

Göllnitz-Gordon identities and parity questions - Sun Kim; Ae Ja Yee (Eur. J. Comb., 2011)

Sequence-Based enzyme catalytic Domain Prediction Using Clustering and Aggregated Mutual Information Content - Kwangmin Choi; Sun Kim (J. Bioinform. Comput. Biol., 2011)

BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis - Hyungro Lee; Youngik Yang; Heejoon Chae; Seungyoon Nam; Donghoon Choi; Patanachai Tangchaisin; Chathura Herath; Suresh Marru; Kenneth P. Nephew; Sun Kim (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, Atlanta, GA, USA, November 12-15, , 2011, 2011)

Sequence-Based Enzyme Catalytic Domain Prediction Using Clustering and Aggregated Mutual Information Content - Kwangmin Choi; Sun Kim (2011 IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2011, San Jose, CA, USA, July 26-29, 2011, 2011)

An EM Clustering Algorithm which Produces a Dual Representation - Sun Kim; W. John Wilbur (10th International Conference on Machine Learning and Applications and Workshops, ICMLA 2011, Honolulu, Hawaii, USA, December 18-21, 2011. Volume 2: Special Sessions and Workshop, 2011)

Transitioning BioVLab cloud workbench to a science gateway - Suresh Marru; Heejoon Chae; Patanachai Tangchaisin; Sun Kim; Marlon E. Pierce; Kenneth P. Nephew (Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery, TG '11, Salt Lake City, Utah, USA, July 18-21, 2011, 2011)

ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011 - Robert Grossman; Andrey Rzhetsky; Sun Kim; Wei Wang (ACM, 2011)

Data mining for the study of disease genes and proteins - Sun Kim (Artif. Intell. Medicine, 2010)

Annotation confidence score for genome annotation: a genome comparison approach - Youngik Yang; Donald Gilbert; Sun Kim (Bioinform., 2010)

EGGSlicer: predicting biologically meaningful gene sets from gene clusters using gene ontology information - Heejoon Chae; Kwangmin Choi; Sun Kim; Haleh Ashki (Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, Niagara Falls, NY, USA, August 2-4, 2010, 2010)

Gene cluster profile vectors: A novel method to infer functional coupling using both gene proximity and co-occurrence profiles - Vikas Rao Pejaver; Sun Kim (2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010, Hong Kong, China, December 18-21, 2010, Proceedings, 2010)

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance - Fuxiao Xin; Meng Li; Curtis Balch; Michael Thomson; Meiyun Fan; Yunlong Liu; Scott M. Hammond; Sun Kim; Kenneth P. Nephew (Bioinform., 2009)

Ensembled support vector machines for human papillomavirus risk type prediction from protein secondary structures - Sun Kim; Jeongmi Kim; Byoung-Tak Zhang (Comput. Biol. Medicine, 2009)

Bijective proofs of partition identities arising from modular equations - Sun Kim (J. Comb. Theory A, 2009)

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression - Seungyoon Nam; Meng Li; Kwangmin Choi; Curtis Balch; Sun Kim; Kenneth P. Nephew (Nucleic Acids Res., 2009)

Evolving hypernetwork models of binary time series for forecasting price movements on stock markets - Elena Bautu; Sun Kim; Andrei Bautu; Henri Luchian; Byoung-Tak Zhang (Proceedings of the IEEE Congress on Evolutionary Computation, CEC 2009, Trondheim, Norway, 18-21 May, 2009, 2009)

Evolutionary hypernetwork classifiers for protein-proteininteraction sentence filtering - Jakramate Bootkrajang; Sun Kim; Byoung-Tak Zhang (Genetic and Evolutionary Computation Conference, GECCO 2009, Proceedings, Montreal, Québec, Canada, July 8-12, 2009, 2009)

Experience report: issues in comparing gene function annotation in text - Youngik Yang; Sun Kim (Proceedings of the 27th Annual International Conference on Design of Communication, SIGDOC 2009, Bloomington, Indiana, USA, October 5-7, 2009, 2009)

A machine-learning approach to combined evidence validation of genome assemblies - Jeong-Hyeon Choi; Sun Kim; Haixu Tang; Justen Andrews; Don G. Gilbert; John Colbourne (Bioinform., 2008)

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells - Meng Li; Hyun-il Henry Paik; Curtis Balch; Yoosung Kim; Lang Li; Tim Hui-Ming Huang; Kenneth P. Nephew; Sun Kim (Bioinform., 2008)

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts - Kwangmin Choi; Sun Kim (BMC Bioinform., 2008)

A gene pattern mining algorithm using interchangeable gene sets for prokaryotes - Meng Hu; Kwangmin Choi; Wei Su; Sun Kim; Jiong Yang (BMC Bioinform., 2008)

PIE: an online prediction system for protein-protein interactions from text - Sun Kim; Soo-Yong Shin; In-Hee Lee; Soo-Jin Kim; Ram Sriram; Byoung-Tak Zhang (Nucleic Acids Res., 2008)

BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment - Youngik Yang; Jong Youl Choi; Kwangmin Choi; Marlon E. Pierce; Dennis Gannon; Sun Kim (Fourth International Conference on e-Science, e-Science 2008, 7-12 December 2008, Indianapolis, IN, USA, 2008)

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences - Sun Kim; Meng Li; Hyun-il Henry Paik; Kenneth P. Nephew; Huidong Shi; Robin Kramer; Dong Xu; Tim Hui-Ming Huang (Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008, 2008)

2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008 - Xue-wen Chen; Xiaohua Hu; Sun Kim (IEEE Computer Society, 2008)

dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis - Seung-Hee Bae; Haixu Tang; Jing Wu; Jun Xie; Sun Kim (Bioinform., 2007)

A Study of Residue Correlation within Protein Sequences and Its Application to Sequence Classification - Christopher Michael Hemmerich; Sun Kim (EURASIP J. Bioinform. Syst. Biol., 2007)

Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm - Chan-Hoon Park; Soo-Jin Kim; Sun Kim; Dong-Yeon Cho; Byoung-Tak Zhang (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, 2007)

EGGS: Extraction of Gene Clusters Using Genome Context Based Sequence Matching Techniques - Sun Kim; Ankita Bhan; Bharath K. Maryada; Kwangmin Choi; Yves V. Brun (Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007, Silicon Valley, CA, USA, November 2-4, 2007, 2007)

Evolving hypernetwork classifiers for microRNA expression profile analysis - Sun Kim; Soo-Jin Kim; Byoung-Tak Zhang (Proceedings of the IEEE Congress on Evolutionary Computation, CEC 2007, 25-28 September 2007, Singapore, 2007)

CLASSEQ: Classification of Sequences via Comparative Analysis of Multiple Genomes - Kwangmin Choi; Youngik Yang; Sun Kim (The Sixth International Conference on Machine Learning and Applications, ICMLA 2007, Cincinnati, Ohio, USA, 13-15 December 2007, 2007)

Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments - Haixu Tang; Sun Kim (Analysis of Biological Data: A Soft Computing Approach, 2007)

COMPAM : visualization of combining pairwise alignments for multiple genomes - Do-Hoon Lee; Jeong-Hyeon Choi; Mehmet M. Dalkilic; Sun Kim (Bioinform., 2006)

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha - Lang Li; Alfred S. L. Cheng; Victor X. Jin; Henry H. Paik; Meiyun Fan; Xiaoman Li; Wei Zhang; Jason Robarge; Curtis Balch; Ramana V. Davuluri; Sun Kim; Tim Hui-Ming Huang; et al. (Bioinform., 2006)

ARCS: an aggregated related column scoring scheme for aligned sequences - Bin Song; Jeong-Hyeon Choi; Guangyu Chen; Jacek Szymanski; Guo-Qiang Zhang; Anthony K. H. Tung; Jaewoo Kang; Sun Kim; Jiong Yang (Bioinform., 2006)

REFINEMENT: A search framework for the identification of interferon-responsive elements in DNA sequences - a case study with ISRE and GAS - Takuma Tsukahara; Sun Kim; Milton W. Taylor (Comput. Biol. Chem., 2006)

Advanced Signal Processing Techniques for Bioinformatics - Xue-wen Chen; Sun Kim; Vladimir I. Pavlovic; David P. Casasent (EURASIP J. Adv. Signal Process., 2006)

BAG: a graph theoretic sequence clustering algorithm - Sun Kim; Jason Lee (Int. J. Data Min. Bioinform., 2006)

Text Classifiers Evolved on a Simulated DNA Computer - Sun Kim; Min-Oh Heo; Byoung-Tak Zhang (IEEE International Conference on Evolutionary Computation, CEC 2006, part of WCCI 2006, Vancouver, BC, Canada, 16-21 July 2006, 2006)

Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines - Sun Kim; Byoung-Tak Zhang (Applications of Evolutionary Computing, EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Budapest, Hungary, April 10-12, 2006, Proceedings, 2006)

Genome Data Type: a Vehicle to Deliver a Genome Comparison System on the Web - Kwangmin Choi; Amit Saple; Sun Kim (Workshops Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 18-22 December 2006, Hong Kong, China, 2006)

Prediction of the Human Papillomavirus Risk Types Using Gap-Spectrum Kernels - Sun Kim; Jae-Hong Eom (Advances in Neural Networks - ISNN 2006, Third International Symposium on Neural Networks, Chengdu, China, May 28 - June 1, 2006, Proceedings, Part III, 2006)

A Tree Kernel-Based Method for Protein-Protein Interaction Mining from Biomedical Literature - Jae-Hong Eom; Sun Kim; Seong-Hwan Kim; Byoung-Tak Zhang (Knowledge Discovery in Life Science Literature, PAKDD 2006 International Workshop, KDLL 2006, Singapore, April 9, 2006, Proceedings, 2006)

An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences - Rupali Patwardhan; Haixu Tang; Sun Kim; Mehmet M. Dalkilic (Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers, 2006)

Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers - Mehmet M. Dalkilic; Sun Kim; Jiong Yang (Springer, 2006)

PLATCOM: a Platform for Computational Comparative Genomics - Kwangmin Choi; Yu Ma; Jeong-Hyeon Choi; Sun Kim (Bioinform., 2005)

GAME: A simple and efficient whole genome alignment method using maximal exact match filtering - Jeong-Hyeon Choi; Hwan-Gue Cho; Sun Kim (Comput. Biol. Chem., 2005)

PLATCOM: a Platform for Computational Comparative Genomics on the Web - Kwangmin Choi; Jeong-Hyeon Choi; Amit Saple; Zhiping Wang; Jason Lee; Sun Kim (Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, CSB 2005 Workshops, Stanford, CA, USA, August 8-11, 2005, 2005)

Gene Teams with Relaxed Proximity Constraint - Sun Kim; Jeong-Hyeon Choi; Jiong Yang (Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2005, Stanford, CA, USA, August 8-11, 2005, 2005)

Cluster Utility: A New Metric for Clustering Biological Sequences - Jason Lee; Sun Kim (Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, CSB 2005 Workshops, Stanford, CA, USA, August 8-11, 2005, 2005)

PLATCOM: Current Status and Plan for the Next Stages - Kwangmin Choi; Jeong-Hyeon Choi; Amit Saple; Zhiping Wang; Jason Lee; Sun Kim (Data Integration in the Life Sciences, Second InternationalWorkshop, DILS 2005, San Diego, CA, USA, July 20-22, 2005, Proceedings, 2005)

An Application of Support Vector Machines for Customer Churn Analysis: Credit Card Case - Sun Kim; Kyung-shik Shin; Kyungdo Park (Advances in Natural Computation, First International Conference, ICNC 2005, Changsha, China, August 27-29, 2005, Proceedings, Part II, 2005)

Motif discovery for proteins using subsequence clustering - Hardik A. Sheth; Sun Kim (Proceedings of the 5th international workshop on Bioinformatics, BIOKDD 2005, Chicago, Illinois, USA, August 21, 2005, 2005)

Multi-objective Evolutionary Probe Design Based on Thermodynamic Criteria for HPV Detection - In-Hee Lee; Sun Kim; Byoung-Tak Zhang (PRICAI 2004: Trends in Artificial Intelligence, 8th Pacific Rim International Conference on Artificial Intelligence, Auckland, New Zealand, August 9-13, 2004, Proceedings, 2004)

Multiple Genome Alignment by Clustering Pairwise Matches - Jeong-Hyeon Choi; Kwangmin Choi; Hwan-Gue Cho; Sun Kim (Comparative Genomics, RECOMB 2004 International Workshop, RCG 2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers, 2004)

Guiding motif discovery by iterative pattern refinement - Zhiping Wang; Mehmet M. Dalkilic; Sun Kim (Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), Nicosia, Cyprus, March 14-17, 2004, 2004)

Genetic Mining of HTML Structures for Effective Web-Document Retrieval - Sun Kim; Byoung-Tak Zhang (Appl. Intell., 2003)

Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thaliana - Irfan Gunduz; Sihui Zhao; Mehmet M. Dalkilic; Sun Kim (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, METMBS '03, June 23 - 26, 2003, Las Vegas, Nevada, USA, 2003)

Graph Theoretic Sequence Clustering Algorithms and Their Applications to Genome Comparison - Sun Kim (Computational Biology and Genome Informatics, 2003)

Evolutionary learning of Web-document structure for information retrieval - Sun Kim; Byoung-Tak Zhang (Proceedings of the 2001 Congress on Evolutionary Computation, CEC 2001, COEX, Seoul, Korea, May 27-30, 2001, 2001)

A probabilistic approach to sequence assembly validation - Sun Kim; Li Liao; Jean-François Tomb (Proceedings of the ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2001), 2001)

Web-Document Retrieval by Genetic Learning of Importance Factors for HTML Tags - Sun Kim; Byoung-Tak Zhang (Proceedings of the International Workshop on Text and Web Mining, Melbourne, Australia, August 2000, 2000)

AMASS: A Structured Pattern Matching Approach to Shotgun Sequence Assembly - Sun Kim; Alberto Maria Segre (J. Comput. Biol., 1999)

A New String-Pattern Matching Algorithm Using Partitioning and Hashing Efficiently - Sun Kim (ACM J. Exp. Algorithmics, 1999)

SCAI TREC-8 Experiments - Dong-Ho Shin; Yu-Hwan Kim; Sun Kim; Jae-Hong Eom; Hyung-Joo Shin; Byoung-Tak Zhang (Proceedings of The Eighth Text REtrieval Conference, TREC 1999, Gaithersburg, Maryland, USA, November 17-19, 1999, 1999)

ModGen: Theorem Proving by Model Generation - Sun Kim; Hantao Zhang (Proceedings of the 12th National Conference on Artificial Intelligence, Seattle, WA, USA, July 31 - August 4, 1994, Volume 1, 1994)