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2020 – today
- 2022
[j29]Blaz Skrlj
, Jan Kralj, Janez Konc, Marko Robnik-Sikonja, Nada Lavrac:
Deep node ranking for neuro-symbolic structural node embedding and classification. Int. J. Intell. Syst. 37(1): 914-943 (2022)- [j28]Janez Konc, Samo Lesnik, Blaz Skrlj, Matej Sova, Matic Proj, Damijan Knez, Stanislav Gobec, Dusanka Janezic:
ProBiS-Dock: A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison. J. Chem. Inf. Model. 62(6): 1573-1584 (2022) - [j27]Janez Konc, Dusanka Janezic:
ProBiS-Fold Approach for Annotation of Human Structures from the AlphaFold Database with No Corresponding Structure in the PDB to Discover New Druggable Binding Sites. J. Chem. Inf. Model. 62(22): 5821-5829 (2022) - 2021
- [j26]Blaz Skrlj, Nika Erzen, Nada Lavrac, Tanja Kunej, Janez Konc:
CaNDis: a web server for investigation of causal relationships between diseases, drugs and drug targets. Bioinform. 37(6): 885-887 (2021) - [j25]Janez Konc, Samo Lesnik, Blaz Skrlj, Dusanka Janezic:
ProBiS-Dock Database: A Web Server and Interactive Web Repository of Small Ligand-Protein Binding Sites for Drug Design. J. Chem. Inf. Model. 61(8): 4097-4107 (2021) - 2020
- [j24]Jonathan Fine, Janez Konc, Ram Samudrala, Gaurav Chopra:
CANDOCK: Chemical Atomic Network-Based Hierarchical Flexible Docking Algorithm Using Generalized Statistical Potentials. J. Chem. Inf. Model. 60(3): 1509-1527 (2020) - [j23]Samo Lesnik, Milan Hodoscek, Barbara Podobnik, Janez Konc:
Loop Grafting between Similar Local Environments for Fc-Silent Antibodies. J. Chem. Inf. Model. 60(11): 5475-5486 (2020)
2010 – 2019
- 2019
- [j22]Katarina Kores, Samo Lesnik, Urban Bren, Dusanka Janezic, Janez Konc:
Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking. J. Chem. Inf. Model. 59(5): 2467-2478 (2019) - [i1]Blaz Skrlj, Jan Kralj, Janez Konc, Marko Robnik-Sikonja, Nada Lavrac:
Deep Node Ranking: an Algorithm for Structural Network Embedding and End-to-End Classification. CoRR abs/1902.03964 (2019) - 2017
- [j21]Samo Lesnik, Blaz Skrlj, Nika Erzen, Urban Bren, Stanislav Gobec, Janez Konc, Dusanka Janezic:
BoBER: web interface to the base of bioisosterically exchangeable replacements. J. Cheminformatics 9(1): 62:1-62:8 (2017) - [j20]Marko Jukic, Janez Konc, Stanislav Gobec, Dusanka Janezic:
Identification of Conserved Water Sites in Protein Structures for Drug Design. J. Chem. Inf. Model. 57(12): 3094-3103 (2017) - [j19]Janez Konc, Blaz Skrlj, Nika Erzen, Tanja Kunej, Dusanka Janezic:
GenProBiS: web server for mapping of sequence variants to protein binding sites. Nucleic Acids Res. 45(Webserver-Issue): W253-W259 (2017) - 2016
- [j18]Athira Dilip, Samo Lesnik, Tanja Stular, Dusanka Janezic, Janez Konc:
Ligand-based virtual screening interface between PyMOL and LiSiCA. J. Cheminformatics 8(1): 46:1-46:5 (2016) - 2015
- [j17]Mitja Ogrizek, Samo Turk, Samo Lesnik, Izidor Sosic, Milan Hodoscek, Bojana Mirkovic, Janko Kos, Dusanka Janezic, Stanislav Gobec, Janez Konc:
Molecular dynamics to enhance structure-based virtual screening on cathepsin B. J. Comput. Aided Mol. Des. 29(8): 707-712 (2015) - [j16]Janez Konc, Samo Lesnik, Dusanka Janezic:
Modeling enzyme-ligand binding in drug discovery. J. Cheminformatics 7: 48:1-48:8 (2015) - [j15]Samo Lesnik, Tanja Stular, Boris Brus, Damijan Knez, Stanislav Gobec, Dusanka Janezic, Janez Konc:
LiSiCA: A Software for Ligand-Based Virtual Screening and Its Application for the Discovery of Butyrylcholinesterase Inhibitors. J. Chem. Inf. Model. 55(8): 1521-1528 (2015) - [j14]Janez Konc, Benjamin T. Miller, Tanja Stular, Samo Lesnik, H. Lee Woodcock III, Bernard R. Brooks, Dusanka Janezic:
ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites. J. Chem. Inf. Model. 55(11): 2308-2314 (2015) - 2014
- [j13]Janez Konc, Dusanka Janezic:
ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites. Nucleic Acids Res. 42(Webserver-Issue): 215-220 (2014) - 2013
- [j12]Matjaz Depolli, Janez Konc, Kati Rozman, Roman Trobec, Dusanka Janezic:
Exact Parallel Maximum Clique Algorithm for General and Protein Graphs. J. Chem. Inf. Model. 53(9): 2217-2228 (2013) - [j11]Muhammad Yusuf, Janez Konc, Sy Bing Choi, Joanna Trykowska Konc, Nurul Bahiyah Ahmad Khairudin, Dusanka Janezic, Habibah A. Wahab:
Structurally Conserved Binding Sites of Hemagglutinin as Targets for Influenza Drug and Vaccine Development. J. Chem. Inf. Model. 53(9): 2423-2436 (2013) - [j10]Janez Konc, Milan Hodoscek, Mitja Ogrizek, Joanna Trykowska Konc, Dusanka Janezic:
Structure-Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison. PLoS Comput. Biol. 9(11) (2013) - 2012
- [j9]Janez Konc, Matjaz Depolli, Roman Trobec, Kati Rozman, Dusanka Janezic:
Parallel-ProBiS: Fast parallel algorithm for local structural comparison of protein structures and binding sites. J. Comput. Chem. 33(27): 2199-2203 (2012) - [j8]Janez Konc, Tomo Cesnik, Joanna Trykowska Konc, Matej Penca, Dusanka Janezic:
ProBiS-Database: Precalculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures. J. Chem. Inf. Model. 52(2): 604-612 (2012) - [j7]Nejc Carl, Milan Hodoscek, Blaz Vehar, Janez Konc, Bernard R. Brooks, Dusanka Janezic:
Correlating Protein Hot Spot Surface Analysis Using ProBiS with Simulated Free Energies of Protein-Protein Interfacial Residues. J. Chem. Inf. Model. 52(10): 2541-2549 (2012) - [j6]Janez Konc, Dusanka Janezic:
ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins. Nucleic Acids Res. 40(Web-Server-Issue): 214-221 (2012) - 2010
- [j5]Janez Konc, Dusanka Janezic:
ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment. Bioinform. 26(9): 1160-1168 (2010) - [j4]Nejc Carl, Janez Konc, Blaz Vehar, Dusanka Janezic:
Protein-Protein Binding Site Prediction by Local Structural Alignment. J. Chem. Inf. Model. 50(10): 1906-1913 (2010) - [j3]Janez Konc, Dusanka Janezic:
ProBiS: a web server for detection of structurally similar protein binding sites. Nucleic Acids Res. 38(Web-Server-Issue): 436-440 (2010)
2000 – 2009
- 2008
- [j2]Nejc Carl, Janez Konc, Dusanka Janezic:
Protein Surface Conservation in Binding Sites. J. Chem. Inf. Model. 48(6): 1279-1286 (2008) - 2007
- [j1]Janez Konc, Dusanka Janezic:
Protein-Protein Binding-Sites Prediction by Protein Surface Structure Conservation. J. Chem. Inf. Model. 47(3): 940-944 (2007) - [c1]Janez Konc, Dusanka Janezic:
A Branch and Bound Algorithm for Matching Protein Structures. ICANNGA (2) 2007: 399-406
Coauthor Index
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