Efficient inference in state-space models through adaptive learning in online Monte Carlo expectation maximization. - Henderson, Donna; Lunter, Gerton (Comput. Stat., 2020)

Haplotype matching in large cohorts using the Li and Stephens model. - Lunter, Gerton (Bioinform., 2019)

An equivariant Bayesian convolutional network predicts recombination hotspots and accurately resolves binding motifs. - Brown, Richard C.; Lunter, Gerton (Bioinform., 2019)

scrm: efficiently simulating long sequences using the approximated coalescent with recombination. - Staab, Paul R.; Zhu, Sha; Metzler, Dirk; Lunter, Gerton (Bioinform., 2015)

GAT: a simulation framework for testing the association of genomic intervals. - Heger, Andreas; Webber, Caleb; Goodson, Martin; Ponting, Chris P.; Lunter, Gerton (Bioinform., 2013)

The variant call format and VCFtools. - Danecek, Petr; Auton, Adam; Abecasis, Gonçalo R.; Albers, Cornelis A.; Banks, Eric; DePristo, Mark A.; Handsaker, Robert E.; Lunter, Gerton; Marth, Gabor T.; Sherry, Stephen T.; McVean, Gilean; Durbin, Richard (Bioinform., 2011)

Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques. - Satija, Rahul; Hein, Jotun; Lunter, Gerton (Bioinform., 2010)

Investigating selection on viruses: a statistical alignment approach. - Groot, Saskia de; Mailund, Thomas; Lunter, Gerton; Hein, Jotun (BMC Bioinform., 2008)

HMMoC - a compiler for hidden Markov models. - Lunter, Gerton (Bioinform., 2007)

Dog as an Outgroup to Human and Mouse. - Lunter, Gerton (PLoS Comput. Biol., 2007)

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. - Lunter, Gerton (2007)

Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model. - Lunter, Gerton; Ponting, Chris P.; Hein, Jotun (PLoS Comput. Biol., 2006)

Bayesian coestimation of phylogeny and sequence alignment. - Lunter, Gerton; Miklós, István; Drummond, Alexei J.; Jensen, Jens Ledet; Hein, Jotun (BMC Bioinform., 2005)

A nucleotide substitution model with nearest-neighbour interactions. - Lunter, Gerton; Hein, Jotun (2004)

An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees. - Lunter, Gerton; Miklós, István; Song, Yun S.; Hein, Jotun (J. Comput. Biol., 2003)

Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. - Lunter, Gerton; Miklós, István; Drummond, Alexei J.; Jensen, Jens Ledet; Hein, Jotun (2003)

Scalable motion compensated scan-rate upconversion. - Pelagotti, Anna; Gabrani, Maria; Heynderickx, Ingrid; Lunter, Gerton (2002)

Occlusion-insensitive motion estimation for segmentation. - Lunter, Gerton (2002)