Causal Representation Learning from Multimodal Biomedical Observations. - Sun, Yuewen; Kong, Lingjing; Chen, Guangyi; Li, Loka; Luo, Gongxu; Li, Zijian; Zhang, Yixuan; Zheng, Yujia; Yang, Mengyue; Stojanov, Petar; Segal, Eran; Xing, Eric P.; et al. (2025)

Improving Diseases Predictions Utilizing External Bio-Banks. - Pinto, Hido; Segal, Eran (CoRR, 2025)

COMPRER: A Multimodal Multi-Objective Pretraining Framework for Enhanced Medical Image Representation. - Lutsker, Guy; Rossman, Hagai; Godiva, Nastya; Segal, Eran (CoRR, 2024)

From Glucose Patterns to Health Outcomes: A Generalizable Foundation Model for Continuous Glucose Monitor Data Analysis. - Lutsker, Guy; Sapir, Gal; Godneva, Anastasia; Shilo, Smadar; Greenfield, Jerry R.; Samocha-Bonet, Dorit; Mannor, Shie; Meirom, Eli; Chechik, Gal; Rossman, Hagai; Segal, Eran (CoRR, 2024)

Generative AI Enables Medical Image Segmentation in Ultra Low-Data Regimes. - Zhang, Li; Jindal, Basu; Alaa, Ahmed; Weinreb, Robert; Wilson, David; Segal, Eran; Zou, James; Xie, Pengtao (CoRR, 2024)

Causal Representation Learning from Multimodal Biological Observations. - Sun, Yuewen; Kong, Lingjing; Chen, Guangyi; Li, Loka; Luo, Gongxu; Li, Zijian; Zhang, Yixuan; Zheng, Yujia; Yang, Mengyue; Stojanov, Petar; Segal, Eran; Xing, Eric P.; et al. (CoRR, 2024)

Toward AI-Driven Digital Organism: Multiscale Foundation Models for Predicting, Simulating and Programming Biology at All Levels. - Song, Le; Segal, Eran; Xing, Eric P. (CoRR, 2024)

SGAC: A Graph Neural Network Framework for Imbalanced and Structure-Aware AMP Classification. - Wang, Yingxu; Liang, Victor; Yin, Nan; Liu, Siwei; Segal, Eran (CoRR, 2024)

A Multimodal Dataset of 21, 412 Recorded Nights for Sleep and Respiratory Research. - Diament, Alon; Gorodetski, Maria; Jankelow, Adam; Keshet, Ayya; Shor, Tal; Weissglas-Volkov, Daphna; Rossman, Hagai; Segal, Eran (CoRR, 2023)

BIPS - A code base for designing and coding of a Phage ImmunoPrecipitation Oligo Library. - Leviatan, Sigal; Kalka, Iris N.; Vogl, Thomas; Klompas, Shelley; Weinberger, Adina; Segal, Eran (PLoS Comput. Biol., 2022)

Harnessing Big Data for Personalized Medicine. - Segal, Eran (2021)

Structural variation in the gut microbiome associates with host health. - Zeevi, David; Korem, Tal; Godneva, Anastasia; Bar, Noam; Kurilshikov, Alexander; Lotan-Pompan, Maya; Weinberger, Adina; Fu, Jingyuan; Wijmenga, Cisca; Zhernakova, Alexandra; Segal, Eran (Nat., 2019)

Regularization Learning Networks: Deep Learning for Tabular Datasets. - Shavitt, Ira; Segal, Eran (2018)

Regularization Learning Networks. - Shavitt, Ira; Segal, Eran (CoRR, 2018)

Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity. - Gritsenko, Alexey A.; Weingarten-Gabbay, Shira; Elias-Kirma, Shani; Nir, Ronit; Ridder, Dick de; Segal, Eran (PLoS Comput. Biol., 2017)

GenoExp: a web tool for predicting gene expression levels from single nucleotide polymorphisms. - Manor, Ohad; Segal, Eran (Bioinform., 2015)

Use of a Computerized Clinical System as a Monitoring Tool for Infection Control. - Zusman, Stas; Axel, Alexander; Touderis, Liat; Schlaeffer, Pnina; Segal, Eran (2015)

Measurements of the Impact of 3′ End Sequences on Gene Expression Reveal Wide Range and Sequence Dependent Effects. - Shalem, Ophir; Carey, Lucas B.; Zeevi, Danny; Sharon, Eilon; Keren, Leeat; Weinberger, Adina; Dahan, Orna; Pilpel, Yitzhak; Segal, Eran (PLoS Comput. Biol., 2013)

Predicting Disease Risk Using Bootstrap Ranking and Classification Algorithms. - Manor, Ohad; Segal, Eran (PLoS Comput. Biol., 2013)

Exact Inference in Networks with Discrete Children of Continuous Parents - Lerner, Uri; Segal, Eran; Koller, Daphne (CoRR, 2013)

Learning Module Networks - Segal, Eran; Pe'er, Dana; Regev, Aviv; Koller, Daphne; Friedman, Nir (CoRR, 2012)

Widespread Compensatory Evolution Conserves DNA-Encoded Nucleosome Organization in Yeast. - Kenigsberg, Ephraim; Bar, Amir; Segal, Eran; Tanay, Amos (PLoS Comput. Biol., 2010)

Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy. - Lubliner, Shai; Segal, Eran (Bioinform., 2009)

Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation. - Raveh-Sadka, Tali; Levo, Michal; Segal, Eran (2009)

Estimating Cell Depth from Somatic Mutations. - Wasserstrom, Adam; Frumkin, Dan; Adar, Rivka; Itzkovitz, Shalev; Stern, Tomer; Kaplan, Shai; Shefer, Gabi; Shur, Irena; Zangi, Lior; Reizel, Yitzhak; Harmelin, Alon; Dor, Yuval; et al. (PLoS Comput. Biol., 2008)

Using Expression Profiles of Caenorhabditis elegans Neurons To Identify Genes That Mediate Synaptic Connectivity. - Baruch, Leehod; Itzkovitz, Shalev; Golan-Mashiach, Michal; Shapiro, Ehud; Segal, Eran (PLoS Comput. Biol., 2008)

A Feature-Based Approach to Modeling Protein-DNA Interactions. - Sharon, Eilon; Lubliner, Shai; Segal, Eran (PLoS Comput. Biol., 2008)

Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae. - Wang, Ji-Ping; Fondufe-Mittendorf, Yvonne; Xi, Liqun; Tsai, Guei-Feng; Segal, Eran; Widom, Jonathan (PLoS Comput. Biol., 2008)

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals. - Field, Yair; Kaplan, Noam; Fondufe-Mittendorf, Yvonne; Moore, Irene K.; Sharon, Eilon; Lubling, Yaniv; Widom, Jonathan; Segal, Eran (PLoS Comput. Biol., 2008)

A Feature-Based Approach to Modeling Protein-DNA Interactions. - Sharon, Eilon; Segal, Eran (2007)

Efficient Bundle Sorting. - Matias, Yossi; Segal, Eran; Vitter, Jeffrey Scott (SIAM J. Comput., 2006)

A Discriminative Model for Identifying Spatial cis-Regulatory Modules. - Segal, Eran; Sharan, Roded (J. Comput. Biol., 2005)

Probabilistic Discovery of Overlapping Cellular Processes and Their Regulation. - Battle, Alexis J.; Segal, Eran; Koller, Daphne (J. Comput. Biol., 2005)

Learning Module Networks. - Segal, Eran; Pe'er, Dana; Regev, Aviv; Koller, Daphne; Friedman, Nir (J. Mach. Learn. Res., 2005)

Session Introduction: Joint Learning from Multiple Types of Genomic Data. - Hartemink, Alexander J.; Segal, Eran (2005)

Rich probabilistic models for genomic data. - Segal, Eran (2004)

Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale. - Wang, Haidong; Segal, Eran; Ben-Hur, Asa; Koller, Daphne; Brutlag, Douglas L. (2004)

Session Introduction. - Hartemink, Alexander J.; Segal, Eran (2004)

A discriminative model for identifying spatial cis-regulatory modules. - Segal, Eran; Sharan, Roded (2004)

Probabilistic discovery of overlapping cellular processes and their regulation. - Battle, Alexis J.; Segal, Eran; Koller, Daphne (2004)

Discovering molecular pathways from protein interaction and gene expression data. - Segal, Eran; Wang, Haidong; Koller, Daphne (2003)

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression. - Segal, Eran; Yelensky, R.; Koller, Daphne (2003)

Decomposing Gene Expression into Cellular Processes. - Segal, Eran; Battle, Alexis J.; Koller, Daphne (2003)

Learning Module Networks. - Segal, Eran; Pe'er, Dana; Regev, Aviv; Koller, Daphne; Friedman, Nir (2003)

Boosting Density Estimation. - Rosset, Saharon; Segal, Eran (2002)

From promoter sequence to expression: a probabilistic framework. - Segal, Eran; Barash, Yoseph; Simon, Itamar; Friedman, Nir; Koller, Daphne (2002)

Probabilistic hierarchical clustering for biological data. - Segal, Eran; Koller, Daphne (2002)

Probabilistic Classification and Clustering in Relational Data. - Taskar, Benjamin; Segal, Eran; Koller, Daphne (2001)

Rich probabilistic models for gene expression. - Segal, Eran; Taskar, Benjamin; Gasch, Audrey P.; Friedman, Nir; Koller, Daphne (2001)

Probabilistic Abstraction Hierarchies. - Segal, Eran; Koller, Daphne; Ormoneit, Dirk (2001)

Exact Inference in Networks with Discrete Children of Continuous Parents. - Lerner, Uri; Segal, Eran; Koller, Daphne (2001)

Efficient bundle sorting. - Matias, Yossi; Segal, Eran; Vitter, Jeffrey Scott (2000)