Transcription Factor-Centric Approach to Identify Non-recurring Putative Regulatory Drivers in Cancer. - Zhao, Jingkang; Martin, Vincentius; Gordân, Raluca (2022)

QBiC-Pred: quantitative predictions of transcription factor binding changes due to sequence variants. - Martin, Vincentius; Zhao, Jingkang; Afek, Ariel; Mielko, Zachery; Gordân, Raluca (Nucleic Acids Res., 2019)

Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding. - Zhao, Jingkang; Li, Dongshunyi; Seo, Jungkyun; Allen, Andrew S.; Gordân, Raluca (2017)

Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes. - Afek, Ariel; Cohen, Hila; Barber-Zucker, Shiran; Gordân, Raluca; Lukatsky, David B. (PLoS Comput. Biol., 2015)

NAR Breakthrough Article: TFBSshape: a motif database for DNA shape features of transcription factor binding sites. - Yang, Lin; Zhou, Tianyin; Dror, Iris; Mathelier, Anthony; Wasserman, Wyeth W.; Gordân, Raluca; Rohs, Remo (Nucleic Acids Res., 2014)

COUGER - co-factors associated with uniquely-bound genomic regions. - Munteanu, Alina; Ohler, Uwe; Gordân, Raluca (Nucleic Acids Res., 2014)

Stability selection for regression-based models of transcription factor-DNA binding specificity. - Mordelet, Fantine; Horton, John; Hartemink, Alexander J.; Engelhardt, Barbara E.; Gordân, Raluca (Bioinform., 2013)

Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors. - Munteanu, Alina; Gordân, Raluca (2013)

Identification of Cell Cycle-Regulated, Putative Hyphal Genes in Candida Albicans. - Gordân, Raluca; Pyne, Saumyadipta; Bulyk, Martha L. (2012)

Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions. - Gordân, Raluca; Hartemink, Alexander J.; Bulyk, Martha L. (2010)

Using DNA Duplex Stability Information for Transcription Factor Binding Site Discovery. - Gordân, Raluca; Hartemink, Alexander J. (2008)

A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery. - Gordân, Raluca; Narlikar, Leelavati; Hartemink, Alexander J. (2008)

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast. - Narlikar, Leelavati; Gordân, Raluca; Hartemink, Alexander J. (PLoS Comput. Biol., 2007)

Nucleosome Occupancy Information Improves de novo Motif Discovery. - Narlikar, Leelavati; Gordân, Raluca; Hartemink, Alexander J. (2007)

Informative priors based on transcription factor structural class improve de novo motif discovery. - Narlikar, Leelavati; Gordân, Raluca; Ohler, Uwe; Hartemink, Alexander J. (2006)