Segmentation versus detection: Development and evaluation of deep learning models for prostate imaging reporting and data system lesions localisation on Bi-parametric prostate magnetic resonance imaging. - Min, Zhe; Bianco, Fernando J.; Yang, Qianye; Yan, Wen; Shen, Ziyi; Cohen, David; Rodell, Rachael; Barratt, Dean C.; Hu, Yipeng (CAAI Trans. Intell. Technol., 2025)

Turbulence control in memristive neural network via adaptive magnetic flux based on DLS-ADMM technique. - Ding, Qianming; Wu, Yong; Xie, Ying; Hu, Yipeng; Huang, Weifang; Jia, Ya (Neural Networks, 2025)

Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation. - Saeed, Shaheer U.; Huang, Shiqi; Ramalhinho, João; Gayo, Iani J. M. B.; Brown, Nina Montaña; Bonmati, Ester; Pereira, Stephen P.; Davidson, Brian R.; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng (IEEE Trans. Pattern Anal. Mach. Intell., 2025)

A Deep Learning Framework for Fetal Heart Tracking in Ultrasound Videos: Toward Enhanced Congenital Heart Defects Detection. - Yang, Qianye; Cui, Kangning; Hu, Yipeng; Peng, Can; Hernandez-Cruz, Netzahualcoyotl; Ahuja, Rahul; D'Alberti, Elena; Chan, Raymond; Patey, Olga; Papageorghiou, Aris T.; Noble, J. Alison (2025)

Tell2Reg: Establishing Spatial Correspondence between Images by the Same Language Prompts. - Yan, Wen; Yang, Qianye; Huang, Shiqi; Wang, Yipei; Punwani, Shonit; Emberton, Mark; Stavrinides, Vasilis; Hu, Yipeng; Barratt, Dean C. (2025)

T2-Only Prostate Cancer Prediction by Meta-Learning from BI-Parametric MR Imaging. - Yi, Weixi; Wang, Yipei; Thorley, Natasha; Ng, Alexander; Punwani, Shonit; Kasivisvanathan, Veeru; Barratt, Dean C.; Saeed, Shaheer U.; Hu, Yipeng (2025)

Promptable Cancer Segmentation Using Minimal Expert-Curated Data. - Karam, Lynn; Wang, Yipei; Kasivisvanathan, Veeru; Rusu, Mirabela; Hu, Yipeng; Saeed, Shaheer U. (2025)

SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver Tumours. - Tan, Catalina; Hu, Yipeng; Saeed, Shaheer U. (2025)

CE-LoRA: Computation-Efficient LoRA Fine-Tuning for Language Models. - Chen, Guanduo; He, Yutong; Hu, Yipeng; Yuan, Kun; Yuan, Binhang (CoRR, 2025)

Tell2Reg: Establishing spatial correspondence between images by the same language prompts. - Yan, Wen; Yang, Qianye; Huang, Shiqi; Wang, Yipei; Punwani, Shonit; Emberton, Mark; Stavrinides, Vasilis; Hu, Yipeng; Barratt, Dean C. (CoRR, 2025)

Patient-specific radiomic feature selection with reconstructed healthy persona of knee MR images. - Chen, Yaxi; Ni, Simin; Ivanova, Aleksandra; Saeed, Shaheer U.; Hargunani, Rikin; Huang, Jie; Liu, Chaozong; Hu, Yipeng (CoRR, 2025)

Promptable cancer segmentation using minimal expert-curated data. - Karam, Lynn; Wang, Yipei; Kasivisvanathan, Veeru; Rusu, Mirabela; Hu, Yipeng; Saeed, Shaheer U. (CoRR, 2025)

SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver Tumours. - Tan, Catalina; Hu, Yipeng; Saeed, Shaheer U. (CoRR, 2025)

CineMA: A Foundation Model for Cine Cardiac MRI. - Fu, Yunguan; Yi, Weixi; Manisty, Charlotte; Bhuva, Anish N.; Treibel, Thomas A.; Moon, James C.; Clarkson, Matthew J.; Davies, Rhodri H.; Hu, Yipeng (CoRR, 2025)

Radiomic fingerprints for knee MR images assessment. - Chen, Yaxi; Ni, Simin; Saeed, Shaheer U.; Ivanova, Aleksandra; Hargunani, Rikin; Huang, Jie; Liu, Chaozong; Hu, Yipeng (CoRR, 2025)

TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker. - Li, Qi; Saeed, Shaheer U.; Huang, Yuliang; Luo, Mingyuan; Yan, Zhongnuo; Chen, Jiongquan; Yang, Xin; Ni, Dong; Winter, Nektarios; Nguyen, Phuc; Steinberger, Lucas; Haney, Caelan; et al. (CoRR, 2025)

Reasoning in machine vision: learning to think fast and slow. - Saeed, Shaheer U.; Wang, Yipei; Kasivisvanathan, Veeru; Davidson, Brian R.; Clarkson, Matthew J.; Hu, Yipeng; Alexander, Daniel C. (CoRR, 2025)

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. - Gayo, Iani J. M. B.; Saeed, Shaheer U.; Bonmati, Ester; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng (Int. J. Comput. Assist. Radiol. Surg., 2024)

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease. - Pakzad, Ashkan; Cheung, Wing Keung; Moorsel, Coline H. M. Van; Quan, Kin; Mogulkoc, Nesrin; Bartholmai, Brian J.; Es, H. W. Van; Ezircan, Alper; Beek, Frouke Van; Veltkamp, Marcel; Karwoski, Ronald A.; Peikert, T.; et al. (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2024)

Interpolation-split: a data-centric deep learning approach with big interpolated data to boost airway segmentation performance. - Cheung, Wing Keung; Pakzad, Ashkan; Mogulkoc, Nesrin; Needleman, Sarah; Rangelov, Bojidar; Gudmundsson, Eyjolfur; Zhao, An; Abbas, Mariam; McLaverty, Davina; Asimakopoulos, Dimitrios; Chapman, Robert; Savas, Recep; et al. (J. Big Data, 2024)

Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation. - Yan, Wen; Chiu, Bernard; Shen, Ziyi; Yang, Qianye; Syer, Tom; Min, Zhe; Punwani, Shonit; Emberton, Mark; Atkinson, David; Barratt, Dean C.; Hu, Yipeng (Medical Image Anal., 2024)

CF-Loss: Clinically-relevant feature optimised loss function for retinal multi-class vessel segmentation and vascular feature measurement. - Zhou, Yukun; Xu, Moucheng; Hu, Yipeng; Blumberg, Stefano B.; Zhao, An; Wagner, Siegfried K.; Keane, Pearse A.; Alexander, Daniel C. (Medical Image Anal., 2024)

Expectation maximisation pseudo labels. - Xu, Moucheng; Zhou, Yukun; Jin, Chen; Groot, Marius de; Alexander, Daniel C.; Oxtoby, Neil P.; Hu, Yipeng; Jacob, Joseph (Medical Image Anal., 2024)

Active learning using adaptable task-based prioritisation. - Saeed, Shaheer U.; Ramalhinho, João; Pinnock, Mark A.; Shen, Ziyi; Fu, Yunguan; Brown, Nina Montaña; Bonmati, Ester; Barratt, Dean C.; Pereira, Stephen P.; Davidson, Brian R.; Clarkson, Matthew J.; Hu, Yipeng (Medical Image Anal., 2024)

Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (IEEE Trans. Biomed. Eng., 2024)

Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images. - Pocius, Martynas; Yan, Wen; Barratt, Dean C.; Emberton, Mark; Clarkson, Matthew J.; Hu, Yipeng; Saeed, Shaheer U. (2024)

Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. - Min, Zhe; Baum, Zachary M. C.; Saeed, Shaheer U.; Emberton, Mark; Barratt, Dean C.; Taylor, Zeike A.; Hu, Yipeng (2024)

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI. - Xu, Yinsong; Wang, Yipei; Shen, Ziyi; Gayo, Iani J. M. B.; Thorley, Natasha; Punwani, Shonit; Men, Aidong; Barratt, Dean C.; Chen, Qingchao; Hu, Yipeng (2024)

One Registration is Worth Two Segmentations. - Huang, Shiqi; Xu, Tingfa; Shen, Ziyi; Saeed, Shaheer Ullah; Yan, Wen; Barratt, Dean C.; Hu, Yipeng (2024)

Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker. - Li, Qi; Shen, Ziyi; Yang, Qianye; Barratt, Dean C.; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (2024)

Segmentation by Registration-Enabled SAM Prompt Engineering Using Five Reference Images. - Chen, Yaxi; Ivanova, Aleksandra; Saeed, Shaheer U.; Hargunani, Rikin; Huang, Jie; Liu, Chaozong; Hu, Yipeng (2024)

Semi-weakly-supervised neural network training for medical image registration. - Li, Yiwen; Fu, Yunguan; Gayo, Iani J. M. B.; Yang, Qianye; Min, Zhe; Saeed, Shaheer U.; Yan, Wen; Wang, Yipei; Noble, J. Alison; Emberton, Mark; Clarkson, Matthew J.; Barratt, Dean C.; et al. (CoRR, 2024)

Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. - Pocius, Martynas; Yan, Wen; Barratt, Dean C.; Emberton, Mark; Clarkson, Matthew J.; Hu, Yipeng; Saeed, Shaheer U. (CoRR, 2024)

One registration is worth two segmentations. - Huang, Shiqi; Xu, Tingfa; Shen, Ziyi; Saeed, Shaheer Ullah; Yan, Wen; Barratt, Dean C.; Hu, Yipeng (CoRR, 2024)

Competing for pixels: a self-play algorithm for weakly-supervised segmentation. - Saeed, Shaheer U.; Huang, Shiqi; Ramalhinho, João; Gayo, Iani J. M. B.; Brown, Nina Montaña; Bonmati, Ester; Pereira, Stephen P.; Davidson, Brian R.; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng (CoRR, 2024)

Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. - Min, Zhe; Baum, Zachary M. C.; Saeed, Shaheer U.; Emberton, Mark; Barratt, Dean C.; Taylor, Zeike A.; Hu, Yipeng (CoRR, 2024)

Nonrigid Reconstruction of Freehand Ultrasound without a Tracker. - Li, Qi; Shen, Ziyi; Yang, Qianye; Barratt, Dean C.; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (CoRR, 2024)

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI. - Xu, Yinsong; Wang, Yipei; Shen, Ziyi; Gayo, Iani J. M. B.; Thorley, Natasha; Punwani, Shonit; Men, Aidong; Barratt, Dean C.; Chen, Qingchao; Hu, Yipeng (CoRR, 2024)

Segmentation by registration-enabled SAM prompt engineering using five reference images. - Chen, Yaxi; Ivanova, Aleksandra; Saeed, Shaheer U.; Hargunani, Rikin; Huang, Jie; Liu, Chaozong; Hu, Yipeng (CoRR, 2024)

Subspace Optimization for Large Language Models with Convergence Guarantees. - He, Yutong; Li, Pengrui; Hu, Yipeng; Chen, Chuyan; Yuan, Kun (CoRR, 2024)

SAMReg: SAM-enabled Image Registration with ROI-based Correspondence. - Huang, Shiqi; Xu, Tingfa; Shen, Ziyi; Saeed, Shaheer Ullah; Yan, Wen; Barratt, Dean C.; Hu, Yipeng (CoRR, 2024)

AI-assisted prostate cancer detection and localisation on biparametric MR by classifying radiologist-positives. - Wu, Xiangcen; Wang, Yipei; Yang, Qianye; Thorley, Natasha; Punwani, Shonit; Kasivisvanathan, Veeru; Bonmati, Ester; Hu, Yipeng (CoRR, 2024)

T2-Only Prostate Cancer Prediction by Meta-Learning from Bi-Parametric MR Imaging. - Yi, Weixi; Wang, Yipei; Thorley, Natasha; Ng, Alexander; Punwani, Shonit; Kasivisvanathan, Veeru; Barratt, Dean C.; Saeed, Shaheer Ullah; Hu, Yipeng (CoRR, 2024)

Multi-phase synthetic contrast enhancement in interventional computed tomography for guiding renal cryotherapy. - Pinnock, Mark A.; Hu, Yipeng; Bandula, Steve; Barratt, Dean C. (Int. J. Comput. Assist. Radiol. Surg., 2023)

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. - Li, Yiwen; Fu, Yunguan; Gayo, Iani J. M. B.; Yang, Qianye; Min, Zhe; Saeed, Shaheer U.; Yan, Wen; Wang, Yipei; Noble, J. Alison; Emberton, Mark; Clarkson, Matthew J.; Huisman, Henkjan; et al. (Medical Image Anal., 2023)

Meta-Learning Initializations for Interactive Medical Image Registration. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (IEEE Trans. Medical Imaging, 2023)

Non-rigid Medical Image Registration using Physics-informed Neural Networks. - Min, Zhe; Baum, Zachary M. C.; Saeed, Shaheer U.; Emberton, Mark; Barratt, Dean C.; Taylor, Zeike A.; Hu, Yipeng (2023)

Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (2023)

PLD-AL: Pseudo-label Divergence-Based Active Learning in Carotid Intima-Media Segmentation for Ultrasound Images. - Tang, Yucheng; Hu, Yipeng; Li, Jing; Lin, Hu; Xu, Xiang; Huang, Ke; Lin, Hongxiang (2023)

Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. - Fu, Yunguan; Li, Yiwen; Saeed, Shaheer U.; Clarkson, Matthew J.; Hu, Yipeng (2023)

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (2023)

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. - Saeed, Shaheer U.; Syer, Tom; Yan, Wen; Yang, Qianye; Emberton, Mark; Punwani, Shonit; Clarkson, Matthew John; Barratt, Dean C.; Hu, Yipeng (2023)

Spatial Correspondence between Graph Neural Network-Segmented Images. - Li, Qian; Fu, Yunguan; Yang, Qianye; Du, Zhijiang; Yu, Hongjian; Hu, Yipeng (2023)

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. - Yi, Weixi; Stavrinides, Vasilis; Baum, Zachary M. C.; Yang, Qianye; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng; Saeed, Shaheer U. (2023)

SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. - Brown, Nina Montaña; Saeed, Shaheer U.; Abdulaal, Ahmed; Dowrick, Thomas; Kilic, Yakup; Wilkinson, Sophie; Gao, Jack; Mashar, Meghavi; He, Chloe; Stavropoulou, Alkisti; Thomson, Emma; Baum, Zachary M. C.; et al. (2023)

Non-rigid Medical Image Registration using Physics-informed Neural Networks. - Min, Zhe; Baum, Zachary M. C.; Saeed, Shaheer U.; Emberton, Mark; Barratt, Dean C.; Taylor, Zeike A.; Hu, Yipeng (CoRR, 2023)

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. - Saeed, Shaheer U.; Syer, Tom; Yan, Wen; Yang, Qianye; Emberton, Mark; Punwani, Shonit; Clarkson, Matthew J.; Barratt, Dean C.; Hu, Yipeng (CoRR, 2023)

Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. - Fu, Yunguan; Li, Yiwen; Saeed, Shaheer U.; Clarkson, Matthew J.; Hu, Yipeng (CoRR, 2023)

Spatial Correspondence between Graph Neural Network-Segmented Images. - Li, Qian; Fu, Yunguan; Yang, Qianye; Du, Zhijiang; Yu, Hongjian; Hu, Yipeng (CoRR, 2023)

Expectation Maximization Pseudo Labelling for Segmentation with Limited Annotations. - Xu, Mou-Cheng; Zhou, Yukun; Jin, Chen; Groot, Marius de; Alexander, Daniel C.; Oxtoby, Neil P.; Hu, Yipeng; Jacob, Joseph (CoRR, 2023)

Combiner and HyperCombiner Networks: Rules to Combine Multimodality MR Images for Prostate Cancer Localisation. - Yan, Wen; Chiu, Bernard; Shen, Ziyi; Yang, Qianye; Syer, Tom; Min, Zhe; Punwani, Shonit; Emberton, Mark; Atkinson, David; Barratt, Dean C.; Hu, Yipeng (CoRR, 2023)

A data-centric deep learning approach to airway segmentation. - Cheung, Wing Keung; Pakzad, Ashkan; Mogulkoc, Nesrin; Needleman, Sarah; Rangelov, Bojidar; Gudmundsson, Eyjolfur; Zhao, An; Abbas, Mariam; McLaverty, Davina; Asimakopoulos, Dimitrios; Chapman, Robert; Savas, Recep; et al. (CoRR, 2023)

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (CoRR, 2023)

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. - Yi, Weixi; Stavrinides, Vasilis; Baum, Zachary M. C.; Yang, Qianye; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng; Saeed, Shaheer U. (CoRR, 2023)

A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models. - Fu, Yunguan; Li, Yiwen; Saeed, Shaheer U.; Clarkson, Matthew J.; Hu, Yipeng (CoRR, 2023)

Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (CoRR, 2023)

Task model-specific operator skill assessment in routine fetal ultrasound scanning. - Wang, Yipei; Yang, Qianye; Drukker, Lior; Papageorghiou, Aris T.; Hu, Yipeng; Noble, J. Alison (Int. J. Comput. Assist. Radiol. Surg., 2022)

Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. - Ramalhinho, João; Koo, Bongjin; Brown, Nina Montaña; Saeed, Shaheer U.; Bonmati, Ester; Gurusamy, Kurinchi; Pereira, Stephen P.; Davidson, Brian R.; Hu, Yipeng; Clarkson, Matthew J. (Int. J. Comput. Assist. Radiol. Surg., 2022)

Image quality assessment for machine learning tasks using meta-reinforcement learning. - Saeed, Shaheer U.; Fu, Yunguan; Stavrinides, Vasilis; Baum, Zachary M. C.; Yang, Qianye; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Noble, J. Alison; Barratt, Dean C.; Hu, Yipeng (Medical Image Anal., 2022)

Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. - Vesal, Sulaiman; Gayo, Iani J. M. B.; Bhattacharya, Indrani; Natarajan, Shyam; Marks, Leonard S.; Barratt, Dean C.; Fan, Richard E.; Hu, Yipeng; Sonn, Geoffrey A.; Rusu, Mirabela (Medical Image Anal., 2022)

Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. - Bonmati, Ester; Hu, Yipeng; Grimwood, Alexander; Johnson, Gavin J.; Goodchild, George; Keane, Margaret G.; Gurusamy, Kurinchi; Davidson, Brian R.; Clarkson, Matthew J.; Pereira, Stephen P.; Barratt, Dean C. (IEEE Trans. Medical Imaging, 2022)

Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. - Yang, Qianye; Atkinson, David; Fu, Yunguan; Syer, Tom; Yan, Wen; Punwani, Shonit; Clarkson, Matthew J.; Barratt, Dean C.; Vercauteren, Tom; Hu, Yipeng (IEEE Trans. Medical Imaging, 2022)

FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning. - Li, Yiwen; Fu, Yunguan; Yang, Qianye; Min, Zhe; Yan, Wen; Huisman, Henkjan J.; Barratt, Dean C.; Prisacariu, Victor Adrian; Hu, Yipeng (2022)

Optimising Chest X-Rays for Image Analysis by Identifying and Removing Confounding Factors. - Aslani, Shahab; Lilaonitkul, Watjana; Gnanananthan, Vaishnavi; Raj, Divya; Rangelov, Bojidar; Young, Alexandra L.; Hu, Yipeng; Taylor, Paul; Alexander, Daniel C.; Jacob, Joseph (2022)

Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction. - Raillard, Pierre; Cristoni, Lorenzo; Walden, Andrew; Lazzari, Roberto; Pulimood, Thomas; Grandjean, Louis; Wheeler-Kingshott, Claudia A. M. Gandini; Hu, Yipeng; Baum, Zachary M. C. (2022)

The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation. - Yan, Wen; Yang, Qianye; Syer, Tom; Min, Zhe; Punwani, Shonit; Emberton, Mark; Barratt, Dean C.; Chiu, Bernard; Hu, Yipeng (2022)

Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data. - Baum, Zachary M. C.; Ungi, Tamas; Schlenger, Christopher; Hu, Yipeng; Barratt, Dean C. (2022)

Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. - Gayo, Iani J. M. B.; Saeed, Shaheer U.; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng (2022)

Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (2022)

Towards Multi-modal Self-supervised Video and Ultrasound Pose Estimation for Laparoscopic Liver Surgery. - Brown, Nina Montaña; Ramalhinho, João; Koo, Bongjin; Allam, Moustafa; Davidson, Brian R.; Gurusamy, Kurinchi; Hu, Yipeng; Clarkson, Matthew J. (2022)

Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. - Shen, Ziyi; Yang, Qianye; Shen, Yuming; Giganti, Francesco; Stavrinides, Vasilis; Fan, Richard E.; Moore, Caroline M.; Rusu, Mirabela; Sonn, Geoffrey A.; Torr, Philip H. S.; Barratt, Dean C.; Hu, Yipeng (2022)

Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-supervised Segmentation. - Xu, Mou-Cheng; Zhou, Yukun; Jin, Chen; Groot, Marius de; Alexander, Daniel C.; Oxtoby, Neil P.; Hu, Yipeng; Jacob, Joseph (2022)

Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings (Springer, 2022)

Cross-institution Male Pelvic Structures. - Li, Yiwen; Fu, Yunguan; Gayo, Iani J. M. B.; Yang, Qianye; Min, Zhe; Saeed, Shaheer U.; Yan, Wen; Wang, Yipei; Noble, J. Alison; Emberton, Mark; Clarkson, Matthew J.; Huisman, Henkjan; et al. (Zenodo, 2022)

Freehand ultrasound without external trackers. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (Zenodo, 2022)

Few-shot image segmentation for cross-institution male pelvic organs using registration-assisted prototypical learning. - Li, Yiwen; Fu, Yunguan; Yang, Qianye; Min, Zhe; Yan, Wen; Huisman, Henkjan J.; Barratt, Dean C.; Prisacariu, Victor Adrian; Hu, Yipeng (CoRR, 2022)

Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. - Saeed, Shaheer U.; Yan, Wen; Fu, Yunguan; Giganti, Francesco; Yang, Qianye; Baum, Zachary M. C.; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Emberton, Mark; Barratt, Dean C.; Hu, Yipeng (CoRR, 2022)

VAFO-Loss: VAscular Feature Optimised Loss Function for Retinal Artery/Vein Segmentation. - Zhou, Yukun; Xu, Moucheng; Hu, Yipeng; Blumberg, Stefano B.; Zhao, An; Wagner, Siegfried K.; Keane, Pearse A.; Alexander, Daniel C. (CoRR, 2022)

Image quality assessment for machine learning tasks using meta-reinforcement learning. - Saeed, Shaheer U.; Fu, Yunguan; Stavrinides, Vasilis; Baum, Zachary M. C.; Yang, Qianye; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Noble, J. Alison; Barratt, Dean C.; Hu, Yipeng (CoRR, 2022)

The impact of using voxel-level segmentation metrics on evaluating multifocal prostate cancer localisation. - Yan, Wen; Yang, Qianye; Syer, Tom; Min, Zhe; Punwani, Shonit; Emberton, Mark; Barratt, Dean C.; Chiu, Bernard; Hu, Yipeng (CoRR, 2022)

Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration. - Shen, Ziyi; Yang, Qianye; Shen, Yuming; Giganti, Francesco; Stavrinides, Vasilis; Fan, Richard E.; Moore, Caroline M.; Rusu, Mirabela; Sonn, Geoffrey A.; Torr, Philip H. S.; Barratt, Dean C.; Hu, Yipeng (CoRR, 2022)

Strategising template-guided needle placement for MR-targeted prostate biopsy. - Gayo, Iani J. M. B.; Saeed, Shaheer U.; Barratt, Dean C.; Clarkson, Matthew J.; Hu, Yipeng (CoRR, 2022)

Learning Generalized Non-Rigid Multimodal Biomedical Image Registration from Generic Point Set Data. - Baum, Zachary M. C.; Ungi, Tamas; Schlenger, Christopher; Hu, Yipeng; Barratt, Dean C. (CoRR, 2022)

Meta-Registration: Learning Test-Time Optimization for Single-Pair Image Registration. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (CoRR, 2022)

Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction. - Raillard, Pierre; Cristoni, Lorenzo; Walden, Andrew; Lazzari, Roberto; Pulimood, Thomas; Grandjean, Louis; Wheeler-Kingshott, Claudia A. M. Gandini; Hu, Yipeng; Baum, Zachary M. C. (CoRR, 2022)

Cross-Modality Image Registration using a Training-Time Privileged Third Modality. - Yang, Qianye; Atkinson, David; Fu, Yunguan; Syer, Tom; Yan, Wen; Punwani, Shonit; Clarkson, Matthew J.; Barratt, Dean C.; Vercauteren, Tom; Hu, Yipeng (CoRR, 2022)

Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-Supervised Segmentation. - Xu, Mou-Cheng; Zhou, Yukun; Jin, Chen; Groot, Marius de; Alexander, Daniel C.; Oxtoby, Neil P.; Hu, Yipeng; Jacob, Joseph (CoRR, 2022)

Optimising Chest X-Rays for Image Analysis by Identifying and Removing Confounding Factors. - Aslani, Shahab; Lilaonitkul, Watjana; Gnanananthan, Vaishnavi; Raj, Divya; Rangelov, Bojidar; Young, Alexandra L.; Hu, Yipeng; Taylor, Paul; Alexander, Daniel C.; Jacob, Joseph (CoRR, 2022)

Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study. - Vesal, Sulaiman; Gayo, Iani J. M. B.; Bhattacharya, Indrani; Natarajan, Shyam; Marks, Leonard S.; Barratt, Dean C.; Fan, Richard E.; Hu, Yipeng; Sonn, Geoffrey A.; Rusu, Mirabela (CoRR, 2022)

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. - Li, Yiwen; Fu, Yunguan; Gayo, Iani J. M. B.; Yang, Qianye; Min, Zhe; Saeed, Shaheer U.; Yan, Wen; Wang, Yipei; Noble, J. Alison; Emberton, Mark; Clarkson, Matthew J.; Huisman, Henkjan J.; et al. (CoRR, 2022)

Meta-Learning Initializations for Interactive Medical Image Registration. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (CoRR, 2022)

MONAI: An open-source framework for deep learning in healthcare. - Cardoso, M. Jorge; Li, Wenqi; Brown, Richard; Ma, Nic; Kerfoot, Eric; Wang, Yiheng; Murray, Benjamin; Myronenko, Andriy; Zhao, Can; Yang, Dong; Nath, Vishwesh; He, Yufan; et al. (CoRR, 2022)

Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. - Li, Qi; Shen, Ziyi; Li, Qian; Barratt, Dean C.; Dowrick, Thomas; Clarkson, Matthew J.; Vercauteren, Tom; Hu, Yipeng (CoRR, 2022)

Active learning using adaptable task-based prioritisation. - Saeed, Shaheer U.; Ramalhinho, João; Pinnock, Mark A.; Shen, Ziyi; Fu, Yunguan; Brown, Nina Montaña; Bonmati, Ester; Barratt, Dean C.; Pereira, Stephen P.; Davidson, Brian R.; Clarkson, Matthew J.; Hu, Yipeng (CoRR, 2022)

Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver. - Brown, Nina Montaña; Ramalhinho, João; Allam, Moustafa; Davidson, Brian R.; Hu, Yipeng; Clarkson, Matthew J. (Int. J. Comput. Assist. Radiol. Surg., 2021)

Real-time multimodal image registration with partial intraoperative point-set data. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (Medical Image Anal., 2021)

AI reflections in 2020. - Jobin, Anna; Man, Kingson; Damasio, Antonio; Kaissis, Georgios; Braren, Rickmer; Stoyanovich, Julia; Bavel, Jay J. Van; West, Tessa V.; Mittelstadt, Brent D.; Eshraghian, Jason; Costa-jussà, Marta R.; Tzachor, Asaf; et al. (Nat. Mach. Intell., 2021)

Few-shot Semantic Segmentation with Self-supervision from Pseudo-classes. - Li, Yiwen; Data, Gratianus Wesley Putra; Fu, Yunguan; Hu, Yipeng; Prisacariu, Victor Adrian (2021)

Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. - Saeed, Shaheer U.; Fu, Yunguan; Baum, Zachary M. C.; Yang, Qianye; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Barratt, Dean C.; Hu, Yipeng (2021)

Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. - Yang, Qianye; Vercauteren, Tom; Fu, Yunguan; Giganti, Francesco; Ghavami, Nooshin; Stavrinides, Vasilis; Moore, Caroline M.; Clarkson, Matthew J.; Barratt, Dean C.; Hu, Yipeng (2021)

Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels. - Chalcroft, Liam F.; Qu, Jiongqi; Martin, Sophie A.; Gayo, Iani J. M. B.; Minore, Giulio V.; Singh, Imraj R. D.; Saeed, Shaheer U.; Yang, Qianye; Baum, Zachary M. C.; Altmann, André; Hu, Yipeng (2021)

Lung Ultrasound Segmentation and Adaptation Between COVID-19 and Community-Acquired Pneumonia. - Mason, Harry; Cristoni, Lorenzo; Walden, Andrew; Lazzari, Roberto; Pulimood, Thomas; Grandjean, Louis; Wheeler-Kingshott, Claudia A. M. Gandini; Hu, Yipeng; Baum, Zachary M. C. (2021)

Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. - Grimwood, Alexander; Ramalhinho, João; Baum, Zachary M. C.; Brown, Nina Montaña; Johnson, Gavin J.; Hu, Yipeng; Clarkson, Matthew J.; Pereira, Stephen P.; Barratt, Dean C.; Bonmati, Ester (2021)

Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. - Saeed, Shaheer U.; Fu, Yunguan; Stavrinides, Vasilis; Baum, Zachary M. C.; Yang, Qianye; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Noble, J. Alison; Barratt, Dean C.; Hu, Yipeng (2021)

Learning to Address Intra-segment Misclassification in Retinal Imaging. - Zhou, Yukun; Xu, Moucheng; Hu, Yipeng; Lin, Hongxiang; Jacob, Joseph; Keane, Pearse A.; Alexander, Daniel C. (2021)

Image quality assessment for closed-loop computer-assisted lung ultrasound. - Baum, Zachary M. C.; Bonmati, Ester; Cristoni, Lorenzo; Walden, Andrew; Prados, Ferran; Kanber, Baris; Barratt, Dean C.; Hawkes, David J.; Parker, Geoff J. M.; Wheeler-Kingshott, Claudia A. M. Gandini; Hu, Yipeng (2021)

End-to-end forecasting of needle trajectory in percutaneous ablation. - Pinnock, Mark A.; Hu, Yipeng; Bandula, Steve; Barratt, Dean C. (2021)

Combined 3D super-resolution, de-noising and partial volume correction for percutaneous ablation. - Pinnock, Mark A.; Hu, Yipeng; Bandula, Steve; Barratt, Dean C. (2021)

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images. - Min, Zhe; Bianco, Fernando J.; Yang, Qianye; Rodell, Rachael; Yan, Wen; Barratt, Dean C.; Hu, Yipeng (2021)

Simplifying Medical Ultrasound - Second International Workshop, ASMUS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings (Springer, 2021)

Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. - Yang, Qianye; Vercauteren, Tom; Fu, Yunguan; Giganti, Francesco; Ghavami, Nooshin; Stavrinides, Vasilis; Moore, Caroline M.; Clarkson, Matthew J.; Barratt, Dean C.; Hu, Yipeng (CoRR, 2021)

Learning image quality assessment by reinforcing task amenable data selection. - Saeed, Shaheer U.; Fu, Yunguan; Baum, Zachary M. C.; Yang, Qianye; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Barratt, Dean C.; Hu, Yipeng (CoRR, 2021)

Learning to Address Intra-segment Misclassification in Retinal Imaging. - Zhou, Yukun; Xu, Moucheng; Hu, Yipeng; Lin, Hongxiang; Jacob, Joseph; Keane, Pearse A.; Alexander, Daniel C. (CoRR, 2021)

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR images. - Min, Zhe; Bianco, Fernando J.; Yang, Qianye; Rodell, Rachael; Yan, Wen; Barratt, Dean C.; Hu, Yipeng (CoRR, 2021)

Lung Ultrasound Segmentation and Adaptation between COVID-19 and Community-Acquired Pneumonia. - Mason, Harry; Cristoni, Lorenzo; Walden, Andrew; Lazzari, Roberto; Pulimood, Thomas; Grandjean, Louis; Wheeler-Kingshott, Claudia A. M. Gandini; Hu, Yipeng; Baum, Zachary M. C. (CoRR, 2021)

Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labels. - Chalcroft, Liam F.; Qu, Jiongqi; Martin, Sophie A.; Gayo, Iani J. M. B.; Minore, Giulio V.; Singh, Imraj R. D.; Saeed, Shaheer U.; Yang, Qianye; Baum, Zachary M. C.; Altmann, André; Hu, Yipeng (CoRR, 2021)

Adaptable image quality assessment using meta-reinforcement learning of task amenability. - Saeed, Shaheer U.; Fu, Yunguan; Stavrinides, Vasilis; Baum, Zachary M. C.; Yang, Qianye; Rusu, Mirabela; Fan, Richard E.; Sonn, Geoffrey A.; Noble, J. Alison; Barratt, Dean C.; Hu, Yipeng (CoRR, 2021)

Real-time multimodal image registration with partial intraoperative point-set data. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (CoRR, 2021)

Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. - Bonmati, Ester; Hu, Yipeng; Grimwood, Alexander; Johnson, Gavin J.; Goodchild, George; Keane, Margaret G.; Gurusamy, Kurinchi; Davidson, Brian R.; Clarkson, Matthew J.; Pereira, Stephen P.; Barratt, Dean C. (CoRR, 2021)

Few-shot Semantic Segmentation with Self-supervision from Pseudo-classes. - Li, Yiwen; Data, Gratianus Wesley Putra; Fu, Yunguan; Hu, Yipeng; Prisacariu, Victor Adrian (CoRR, 2021)

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease. - Pakzad, Ashkan; Cheung, Wing Keung; Quan, Kin; Mogulkoc, Nesrin; Moorsel, Coline H. M. Van; Bartholmai, Brian J.; Es, Hendrik W. Van; Ezircan, Alper; Beek, Frouke Van; Veltkamp, Marcel; Karwoski, Ronald A.; Peikert, Tobias; et al. (CoRR, 2021)

DeepReg: a deep learning toolkit for medical image registration. - Fu, Yunguan; Brown, Nina Montaña; Saeed, Shaheer U.; Casamitjana, Adrià; Baum, Zachary; Delaunay, Rémi; Yang, Qianye; Grimwood, Alexander; Min, Zhe; Blumberg, Stefano B.; Iglesias, Juan Eugenio; Barratt, Dean C.; et al. (J. Open Source Softw., 2020)

The challenges of deploying artificial intelligence models in a rapidly evolving pandemic. - Hu, Yipeng; Jacob, Joseph; Parker, Geoffrey J. M.; Hawkes, David J.; Hurst, John R.; Stoyanov, Danail (Nat. Mach. Intell., 2020)

Cross-Device Cross-Anatomy Adaptation Network for Ultrasound Video Analysis. - Chen, Qingchao; Liu, Yang; Hu, Yipeng; Self, Alice; Papageorghiou, Aris T.; Noble, J. Alison (2020)

Multimodality Biomedical Image Registration Using Free Point Transformer Networks. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (2020)

Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. - Yang, Qianye; Fu, Yunguan; Giganti, Francesco; Ghavami, Nooshin; Chen, Qingchao; Noble, J. Alison; Vercauteren, Tom; Barratt, Dean C.; Hu, Yipeng (2020)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. - Grimwood, Alex; McNair, Helen; Hu, Yipeng; Bonmati, Ester; Barratt, Dean C.; Harris, Emma J. (2020)

An Unsupervised Approach to Ultrasound Elastography with End-to-end Strain Regularisation. - Delaunay, Rémi; Hu, Yipeng; Vercauteren, Tom (2020)

Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. - Saeed, Shaheer U.; Taylor, Zeike A.; Pinnock, Mark A.; Emberton, Mark; Barratt, Dean C.; Hu, Yipeng (2020)

Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings (Springer, 2020)

DeepReg: a deep learning toolkit for medical image registration. - Fu, Yunguan; Brown, Nina Montaña; Saeed, Shaheer U.; Casamitjana, Adrià; Baum, Zachary M. C.; Delaunay, Rémi; Yang, Qianye; Grimwood, Alexander; Min, Zhe; Blumberg, Stefano B.; Iglesias, Juan Eugenio; Barratt, Dean C.; et al. (Zenodo, 2020)

The challenges of deploying artificial intelligence models in a rapidly evolving pandemic. - Hu, Yipeng; Jacob, Joseph; Parker, Geoffrey J. M.; Hawkes, David J.; Hurst, John R.; Stoyanov, Danail (CoRR, 2020)

Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes. - Saeed, Shaheer U.; Taylor, Zeike A.; Pinnock, Mark A.; Emberton, Mark; Barratt, Dean C.; Hu, Yipeng (CoRR, 2020)

Multimodality Biomedical Image Registration using Free Point Transformer Networks. - Baum, Zachary M. C.; Hu, Yipeng; Barratt, Dean C. (CoRR, 2020)

Image quality assessment for closed-loop computer-assisted lung ultrasound. - Baum, Zachary M. C.; Bonmati, Ester; Cristoni, Lorenzo; Walden, Andrew; Prados, Ferran; Kanber, Baris; Barratt, Dean C.; Hawkes, David J.; Parker, Geoffrey J. M.; Wheeler-Kingshott, Claudia A. M. Gandini; Hu, Yipeng (CoRR, 2020)

Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination. - Yang, Qianye; Fu, Yunguan; Giganti, Francesco; Ghavami, Nooshin; Chen, Qingchao; Noble, J. Alison; Vercauteren, Tom; Barratt, Dean C.; Hu, Yipeng (CoRR, 2020)

Introduction to Medical Image Registration with DeepReg, Between Old and New. - Brown, Nina Montaña; Fu, Yunguan; Saeed, Shaheer U.; Casamitjana, Adrià; Baum, Zachary M. C.; Delaunay, Rémi; Yang, Qianye; Grimwood, Alex; Min, Zhe; Bonmati, Ester; Vercauteren, Tom; Clarkson, Matthew J.; et al. (CoRR, 2020)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. - Grimwood, Alexander; McNair, Helen; Hu, Yipeng; Bonmati, Ester; Barratt, Dean C.; Harris, Emma J. (CoRR, 2020)

DeepReg: a deep learning toolkit for medical image registration. - Fu, Yunguan; Brown, Nina Montaña; Saeed, Shaheer U.; Casamitjana, Adrià; Baum, Zachary M. C.; Delaunay, Rémi; Yang, Qianye; Grimwood, Alexander; Min, Zhe; Blumberg, Stefano B.; Iglesias, Juan Eugenio; Barratt, Dean C.; et al. (CoRR, 2020)

Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration. - Ghavami, Nooshin; Hu, Yipeng; Gibson, Eli; Bonmati, Ester; Emberton, Mark; Moore, Caroline M.; Barratt, Dean C. (Medical Image Anal., 2019)

More Unlabelled Data or Label More Data? A Study on Semi-supervised Laparoscopic Image Segmentation. - Fu, Yunguan; Robu, Maria R.; Koo, Bongjin; Schneider, Crispin; Laarhoven, Stijn van; Stoyanov, Danail; Davidson, Brian R.; Clarkson, Matthew J.; Hu, Yipeng (2019)

Conditional Segmentation in Lieu of Image Registration. - Hu, Yipeng; Gibson, Eli; Barratt, Dean C.; Emberton, Mark; Noble, J. Alison; Vercauteren, Tom (2019)

Conditional Segmentation in Lieu of Image Registration. - Hu, Yipeng; Gibson, Eli; Barratt, Dean C.; Emberton, Mark; Noble, J. Alison; Vercauteren, Tom (CoRR, 2019)

More unlabelled data or label more data? A study on semi-supervised laparoscopic image segmentation. - Fu, Yunguan; Robu, Maria R.; Koo, Bongjin; Schneider, Crispin; Laarhoven, Stijn van; Stoyanov, Danail; Davidson, Brian R.; Clarkson, Matthew J.; Hu, Yipeng (CoRR, 2019)

Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. - Bonmati, Ester; Hu, Yipeng; Gibson, Eli; Uribarri, Laura; Keane, Geri; Gurusamy, Kurinchi; Davidson, Brian R.; Pereira, Stephen P.; Clarkson, Matthew J.; Barratt, Dean C. (Int. J. Comput. Assist. Radiol. Surg., 2018)

NiftyNet: a deep-learning platform for medical imaging. - Gibson, Eli; Li, Wenqi; Sudre, Carole H.; Fidon, Lucas; Shakir, Dzhoshkun I.; Wang, Guotai; Eaton-Rosen, Zach; Gray, Robert J.; Doel, Tom; Hu, Yipeng; Whyntie, Tom; Nachev, Parashkev; et al. (Comput. Methods Programs Biomed., 2018)

Weakly-supervised convolutional neural networks for multimodal image registration. - Hu, Yipeng; Modat, Marc; Gibson, Eli; Li, Wenqi; Ghavami, Nooshin; Bonmati, Ester; Wang, Guotai; Bandula, Steven; Moore, Caroline M.; Emberton, Mark; Ourselin, Sébastien; Noble, J. Alison; et al. (Medical Image Anal., 2018)

Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. - Gibson, Eli; Giganti, Francesco; Hu, Yipeng; Bonmati, Ester; Bandula, Steve; Gurusamy, Kurinchi; Davidson, Brian R.; Pereira, Stephen P.; Clarkson, Matthew J.; Barratt, Dean C. (IEEE Trans. Medical Imaging, 2018)

Label-driven weakly-supervised learning for multimodal deformarle image registration. - Hu, Yipeng; Modat, Marc; Gibson, Eli; Ghavami, Nooshin; Bonmati, Ester; Moore, Caroline M.; Emberton, Mark; Noble, J. Alison; Barratt, Dean C.; Vercauteren, Tom (2018)

Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning. - Gibson, Eli; Hu, Yipeng; Ghavami, Nooshin; Ahmed, Hashim Uddin; Moore, Caroline M.; Emberton, Mark; Huisman, Henkjan J.; Barratt, Dean C. (2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks. - Hu, Yipeng; Gibson, Eli; Ghavami, Nooshin; Bonmati, Ester; Moore, Caroline M.; Emberton, Mark; Vercauteren, Tom; Noble, J. Alison; Barratt, Dean C. (2018)

Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Bonmati, Ester; Hu, Yipeng; Sindhwani, Nikhil; Dietz, Hans Peter; D'hooge, Jan; Barratt, Dean C.; Deprest, Jan; Vercauteren, Tom (2018)

Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks. - Ghavami, Nooshin; Hu, Yipeng; Bonmati, Ester; Rodell, Rachael; Gibson, Eli; Moore, Caroline M.; Barratt, Dean C. (2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks. - Hu, Yipeng; Gibson, Eli; Ghavami, Nooshin; Bonmati, Ester; Moore, Caroline M.; Emberton, Mark; Vercauteren, Tom; Noble, J. Alison; Barratt, Dean C. (CoRR, 2018)

Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration. - Hu, Yipeng; Modat, Marc; Gibson, Eli; Li, Wenqi; Ghavami, Nooshin; Bonmati, Ester; Wang, Guotai; Bandula, Steven; Moore, Caroline M.; Emberton, Mark; Ourselin, Sébastien; Noble, J. Alison; et al. (CoRR, 2018)

Designing image segmentation studies: Statistical power, sample size and reference standard quality. - Gibson, Eli; Hu, Yipeng; Huisman, Henkjan J.; Barratt, Dean C. (Medical Image Anal., 2017)

Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. - Hu, Yipeng; Kasivisvanathan, Veeru; Simmons, Lucy A. M.; Clarkson, Matthew J.; Thompson, Stephen A.; Shah, Taimur T.; Ahmed, Hashim Uddin; Punwani, Shonit; Hawkes, David J.; Emberton, Mark; Moore, Caroline M.; Barratt, Dean C. (IEEE Trans. Biomed. Eng., 2017)

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. - Hu, Yipeng; Gibson, Eli; Lee, Li-Lin; Xie, Weidi; Barratt, Dean C.; Vercauteren, Tom; Noble, J. Alison (2017)

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. - Hu, Yipeng; Gibson, Eli; Vercauteren, Tom; Ahmed, Hashim Uddin; Emberton, Mark; Moore, Caroline M.; Noble, J. Alison; Barratt, Dean C. (2017)

Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. - Gibson, Eli; Giganti, Francesco; Hu, Yipeng; Bonmati, Ester; Bandula, Steve; Gurusamy, Kurinchi; Davidson, Brian R.; Pereira, Stephen P.; Clarkson, Matthew J.; Barratt, Dean C. (2017)

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. - Hu, Yipeng; Gibson, Eli; Lee, Li-Lin; Xie, Weidi; Barratt, Dean C.; Vercauteren, Tom; Noble, J. Alison (CoRR, 2017)

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. - Hu, Yipeng; Gibson, Eli; Vercauteren, Tom; Ahmed, Hashim Uddin; Emberton, Mark; Moore, Caroline M.; Noble, J. Alison; Barratt, Dean C. (CoRR, 2017)

NiftyNet: a deep-learning platform for medical imaging. - Gibson, Eli; Li, Wenqi; Sudre, Carole H.; Fidon, Lucas; Shakir, Dzhoshkun I.; Wang, Guotai; Eaton-Rosen, Zach; Gray, Robert J.; Doel, Tom; Hu, Yipeng; Whyntie, Tom; Nachev, Parashkev; et al. (CoRR, 2017)

Label-driven weakly-supervised learning for multimodal deformable image registration. - Hu, Yipeng; Modat, Marc; Gibson, Eli; Ghavami, Nooshin; Bonmati, Ester; Moore, Caroline M.; Emberton, Mark; Noble, J. Alison; Barratt, Dean C.; Vercauteren, Tom (CoRR, 2017)

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Bonmati, Ester; Hu, Yipeng; Sindhwani, Nikhil; Dietz, Hans Peter; D'hooge, Jan; Barratt, Dean C.; Deprest, Jan; Vercauteren, Tom (CoRR, 2017)

Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. - Bonmati, Ester; Hu, Yipeng; Gurusamy, Kurinchi; Davidson, Brian R.; Pereira, Stephen P.; Clarkson, Matthew J.; Barratt, Dean C. (2016)

2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions. - Hu, Yipeng; Bonmati, Ester; Gibson, Eli; Hipwell, John H.; Hawkes, David J.; Bandula, Steven; Pereira, Stephen P.; Barratt, Dean C. (2016)

Impact of region contouring variability on image-based focal therapy evaluation. - Gibson, Eli; Donaldson, Ian A.; Shah, Taimur T.; Hu, Yipeng; Ahmed, Hashim Uddin; Barratt, Dean C. (2016)

NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics. - Johnsen, Stian Flage; Taylor, Zeike A.; Clarkson, Matthew J.; Hipwell, John H.; Modat, Marc; Eiben, Björn; Han, Lianghao; Hu, Yipeng; Mertzanidou, Thomy; Hawkes, David J.; Ourselin, Sébastien (Int. J. Comput. Assist. Radiol. Surg., 2015)

Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics. - Johnsen, Stian Flage; Taylor, Zeike A.; Han, Lianghao; Hu, Yipeng; Clarkson, Matthew J.; Hawkes, David J.; Ourselin, Sébastien (Int. J. Comput. Assist. Radiol. Surg., 2015)

Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration. - Hu, Yipeng; Gibson, Eli; Ahmed, Hashim Uddin; Moore, Caroline M.; Emberton, Mark; Barratt, Dean C. (Medical Image Anal., 2015)

Hybrid Decision Forests for Prostate Segmentation in Multi-channel MR Images. - Gao, Qinquan; Asthana, Akshay; Tong, Tong; Hu, Yipeng; Rueckert, Daniel; Edwards, Philip J. (2014)

Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension. - Roth, Holger; McClelland, Jamie; Hampshire, Thomas; Boone, Darren; Hu, Yipeng; Modat, Marc; Zhang, Hui; Ourselin, Sébastien; Halligan, Steve; Hawkes, David J. (2013)

Surface-based prostate registration with biomechanical regularization. - Ven, Wendy J. M. van de; Hu, Yipeng; Barentsz, Jelle O.; Karssemeijer, Nico; Barratt, Dean C.; Huisman, Henkjan J. (2013)

MR to ultrasound registration for image-guided prostate interventions. - Hu, Yipeng; Ahmed, Hashim Uddin; Taylor, Zeike A.; Allen, Clare; Emberton, Mark; Hawkes, David J.; Barratt, Dean C. (Medical Image Anal., 2012)

Modelling Prostate Motion for Data Fusion During Image-Guided Interventions. - Hu, Yipeng; Carter, Timothy J.; Ahmed, Hashim Uddin; Emberton, Mark; Allen, Clare; Hawkes, David J.; Barratt, Dean C. (IEEE Trans. Medical Imaging, 2011)

Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift. - Hu, Yipeng; Rijkhorst, Erik-Jan; Manber, Richard; Hawkes, David J.; Barratt, Dean C. (2010)

MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions. - Hu, Yipeng; Ahmed, Hashim Uddin; Allen, Clare; Pendsé, Doug; Sahu, Mahua; Emberton, Mark; Hawkes, David J.; Barratt, Dean C. (2009)

Modelling Prostate Gland Motion for Image-Guided Interventions. - Hu, Yipeng; Morgan, Dominic; Ahmed, Hashim Uddin; Pendsé, Doug; Sahu, Mahua; Allen, Clare; Emberton, Mark; Hawkes, David J.; Barratt, Dean C. (2008)

A Statistical Motion Model Based on Biomechanical Simulations for Data Fusion during Image-Guided Prostate Interventions. - Hu, Yipeng; Morgan, Dominic; Ahmed, Hashim Uddin; Pendsé, Doug; Sahu, Mahua; Allen, Clare; Emberton, Mark; Hawkes, David J.; Barratt, Dean C. (2008)