Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (IEEE Trans. Pattern Anal. Mach. Intell., 2025)

CE-LoRA: Computation-Efficient LoRA Fine-Tuning for Language Models - Guanduo Chen; Yutong He; Yipeng Hu; Kun Yuan; Binhang Yuan (CoRR, 2025)

Tell2Reg: Establishing spatial correspondence between images by the same language prompts - Wen Yan; Qianye Yang; Shiqi Huang; Yipei Wang; Shonit Punwani; Mark Emberton; Vasilis Stavrinides; Yipeng Hu; Dean C. Barratt (CoRR, 2025)

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy - Iani J. M. B. Gayo; Shaheer U. Saeed; Ester Bonmati; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (Int. J. Comput. Assist. Radiol. Surg., 2024)

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease - Ashkan Pakzad; Wing Keung Cheung; Coline H. M. Van Moorsel; Kin Quan; Nesrin Mogulkoc; Brian J. Bartholmai; H. W. Van Es; Alper Ezircan; Frouke Van Beek; Marcel Veltkamp; Ronald A. Karwoski; T. Peikert; et al. (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2024)

Interpolation-split: a data-centric deep learning approach with big interpolated data to boost airway segmentation performance - Wing Keung Cheung; Ashkan Pakzad; Nesrin Mogulkoc; Sarah Needleman; Bojidar Rangelov; Eyjolfur Gudmundsson; An Zhao; Mariam Abbas; Davina McLaverty; Dimitrios Asimakopoulos; Robert Chapman; Recep Savas; et al. (J. Big Data, 2024)

Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation - Wen Yan; Bernard Chiu; Ziyi Shen; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; David Atkinson; Dean C. Barratt; Yipeng Hu (Medical Image Anal., 2024)

CF-Loss: Clinically-relevant feature optimised loss function for retinal multi-class vessel segmentation and vascular feature measurement - Yukun Zhou; Moucheng Xu; Yipeng Hu; Stefano B. Blumberg; An Zhao; Siegfried K. Wagner; Pearse A. Keane; Daniel C. Alexander (Medical Image Anal., 2024)

Expectation maximisation pseudo labels - Moucheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (Medical Image Anal., 2024)

Active learning using adaptable task-based prioritisation - Shaheer U. Saeed; João Ramalhinho; Mark A. Pinnock; Ziyi Shen; Yunguan Fu; Nina Montaña Brown; Ester Bonmati; Dean C. Barratt; Stephen P. Pereira; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (Medical Image Anal., 2024)

Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (IEEE Trans. Biomed. Eng., 2024)

Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images - Martynas Pocius; Wen Yan; Dean C. Barratt; Mark Emberton; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (IEEE International Symposium on Biomedical Imaging, ISBI 2024, Athens, Greece, May 27-30, 2024, 2024)

Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2024 - 27th International Conference, Marrakesh, Morocco, October 6-10, 2024, Proceedings, Part II, 2024)

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI - Yinsong Xu; Yipei Wang; Ziyi Shen; Iani J. M. B. Gayo; Natasha Thorley; Shonit Punwani; Aidong Men; Dean C. Barratt; Qingchao Chen; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2024 - 27th International Conference, Marrakesh, Morocco, October 6-10, 2024, Proceedings, Part V, 2024)

One Registration is Worth Two Segmentations - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2024 - 27th International Conference, Marrakesh, Morocco, October 6-10, 2024, Proceedings, Part XII, 2024)

Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker - Qi Li; Ziyi Shen; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2024 - 27th International Conference, Marrakesh, Morocco, October 6-10, 2024, Proceedings, Part IV, 2024)

Segmentation by Registration-Enabled SAM Prompt Engineering Using Five Reference Images - Yaxi Chen; Aleksandra Ivanova; Shaheer U. Saeed; Rikin Hargunani; Jie Huang; Chaozong Liu; Yipeng Hu (Biomedical Image Registration - 11th International Workshop, WBIR 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 6, 2024, Proceedings, 2024)

Semi-weakly-supervised neural network training for medical image registration - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Dean C. Barratt; et al. (CoRR, 2024)

Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images - Martynas Pocius; Wen Yan; Dean C. Barratt; Mark Emberton; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (CoRR, 2024)

One registration is worth two segmentations - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (CoRR, 2024)

Competing for pixels: a self-play algorithm for weakly-supervised segmentation - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CoRR, 2024)

Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (CoRR, 2024)

Nonrigid Reconstruction of Freehand Ultrasound without a Tracker - Qi Li; Ziyi Shen; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (CoRR, 2024)

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI - Yinsong Xu; Yipei Wang; Ziyi Shen; Iani J. M. B. Gayo; Natasha Thorley; Shonit Punwani; Aidong Men; Dean C. Barratt; Qingchao Chen; Yipeng Hu (CoRR, 2024)

Segmentation by registration-enabled SAM prompt engineering using five reference images - Yaxi Chen; Aleksandra Ivanova; Shaheer U. Saeed; Rikin Hargunani; Jie Huang; Chaozong Liu; Yipeng Hu (CoRR, 2024)

Subspace Optimization for Large Language Models with Convergence Guarantees - Yutong He; Pengrui Li; Yipeng Hu; Chuyan Chen; Kun Yuan (CoRR, 2024)

SAMReg: SAM-enabled Image Registration with ROI-based Correspondence - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (CoRR, 2024)

AI-assisted prostate cancer detection and localisation on biparametric MR by classifying radiologist-positives - Xiangcen Wu; Yipei Wang; Qianye Yang; Natasha Thorley; Shonit Punwani; Veeru Kasivisvanathan; Ester Bonmati; Yipeng Hu (CoRR, 2024)

T2-Only Prostate Cancer Prediction by Meta-Learning from Bi-Parametric MR Imaging - Weixi Yi; Yipei Wang; Natasha Thorley; Alexander Ng; Shonit Punwani; Veeru Kasivisvanathan; Dean C. Barratt; Shaheer Ullah Saeed; Yipeng Hu (CoRR, 2024)

Multi-phase synthetic contrast enhancement in interventional computed tomography for guiding renal cryotherapy - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2023)

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan Huisman; et al. (Medical Image Anal., 2023)

Meta-Learning Initializations for Interactive Medical Image Registration - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (IEEE Trans. Medical Imaging, 2023)

Non-rigid Medical Image Registration using Physics-informed Neural Networks - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, San Carlos de Bariloche, Argentina, June 18-23, 2023, Proceedings, 2023)

Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (20th IEEE International Symposium on Biomedical Imaging, ISBI 2023, Cartagena, Colombia, April 18-21, 2023, 2023)

PLD-AL: Pseudo-label Divergence-Based Active Learning in Carotid Intima-Media Segmentation for Ultrasound Images - Yucheng Tang; Yipeng Hu; Jing Li; Hu Lin; Xiang Xu; Ke Huang; Hongxiang Lin (Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part II, 2023)

Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation - Yunguan Fu; Yiwen Li; Shaheer U. Saeed; Matthew J. Clarkson; Yipeng Hu (Deep Generative Models - Third MICCAI Workshop, DGM4MICCAI 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings, 2023)

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (Simplifying Medical Ultrasound - 4th International Workshop, ASMUS 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings, 2023)

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion - Shaheer U. Saeed; Tom Syer; Wen Yan; Qianye Yang; Mark Emberton; Shonit Punwani; Matthew John Clarkson; Dean C. Barratt; Yipeng Hu (Medical Imaging with Deep Learning, MIDL 2023, 10-12 July 2023, Nashville, TN, USA, 2023)

Spatial Correspondence between Graph Neural Network-Segmented Images - Qian Li; Yunguan Fu; Qianye Yang; Zhijiang Du; Hongjian Yu; Yipeng Hu (Medical Imaging with Deep Learning, MIDL 2023, 10-12 July 2023, Nashville, TN, USA, 2023)

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images - Weixi Yi; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (Machine Learning in Medical Imaging - 14th International Workshop, MLMI 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings, Part I, 2023)

SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery - Nina Montaña Brown; Shaheer U. Saeed; Ahmed Abdulaal; Thomas Dowrick; Yakup Kilic; Sophie Wilkinson; Jack Gao; Meghavi Mashar; Chloe He; Alkisti Stavropoulou; Emma Thomson; Zachary M. C. Baum; et al. (Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans, LA, USA, December 10 - 16, 2023, 2023)

Non-rigid Medical Image Registration using Physics-informed Neural Networks - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (CoRR, 2023)

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion - Shaheer U. Saeed; Tom Syer; Wen Yan; Qianye Yang; Mark Emberton; Shonit Punwani; Matthew J. Clarkson; Dean C. Barratt; Yipeng Hu (CoRR, 2023)

Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation - Yunguan Fu; Yiwen Li; Shaheer U. Saeed; Matthew J. Clarkson; Yipeng Hu (CoRR, 2023)

Spatial Correspondence between Graph Neural Network-Segmented Images - Qian Li; Yunguan Fu; Qianye Yang; Zhijiang Du; Hongjian Yu; Yipeng Hu (CoRR, 2023)

Expectation Maximization Pseudo Labelling for Segmentation with Limited Annotations - Mou-Cheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (CoRR, 2023)

Combiner and HyperCombiner Networks: Rules to Combine Multimodality MR Images for Prostate Cancer Localisation - Wen Yan; Bernard Chiu; Ziyi Shen; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; David Atkinson; Dean C. Barratt; Yipeng Hu (CoRR, 2023)

A data-centric deep learning approach to airway segmentation - Wing Keung Cheung; Ashkan Pakzad; Nesrin Mogulkoc; Sarah Needleman; Bojidar Rangelov; Eyjolfur Gudmundsson; An Zhao; Mariam Abbas; Davina McLaverty; Dimitrios Asimakopoulos; Robert Chapman; Recep Savas; et al. (CoRR, 2023)

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (CoRR, 2023)

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images - Weixi Yi; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (CoRR, 2023)

A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models - Yunguan Fu; Yiwen Li; Shaheer U. Saeed; Matthew J. Clarkson; Yipeng Hu (CoRR, 2023)

Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (CoRR, 2023)

Task model-specific operator skill assessment in routine fetal ultrasound scanning - Yipei Wang; Qianye Yang; Lior Drukker; Aris T. Papageorghiou; Yipeng Hu; J. Alison Noble (Int. J. Comput. Assist. Radiol. Surg., 2022)

Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT - João Ramalhinho; Bongjin Koo; Nina Montaña Brown; Shaheer U. Saeed; Ester Bonmati; Kurinchi Gurusamy; Stephen P. Pereira; Brian R. Davidson; Yipeng Hu; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2022)

Image quality assessment for machine learning tasks using meta-reinforcement learning - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (Medical Image Anal., 2022)

Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study - Sulaiman Vesal; Iani J. M. B. Gayo; Indrani Bhattacharya; Shyam Natarajan; Leonard S. Marks; Dean C. Barratt; Richard E. Fan; Yipeng Hu; Geoffrey A. Sonn; Mirabela Rusu (Medical Image Anal., 2022)

Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (IEEE Trans. Medical Imaging, 2022)

Cross-Modality Image Registration Using a Training-Time Privileged Third Modality - Qianye Yang; David Atkinson; Yunguan Fu; Tom Syer; Wen Yan; Shonit Punwani; Matthew J. Clarkson; Dean C. Barratt; Tom Vercauteren; Yipeng Hu (IEEE Trans. Medical Imaging, 2022)

FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning - Yiwen Li; Yunguan Fu; Qianye Yang; Zhe Min; Wen Yan; Henkjan J. Huisman; Dean C. Barratt; Victor Adrian Prisacariu; Yipeng Hu (19th IEEE International Symposium on Biomedical Imaging, ISBI 2022, Kolkata, India, March 28-31, 2022, 2022)

Optimising Chest X-Rays for Image Analysis by Identifying and Removing Confounding Factors - Shahab Aslani; Watjana Lilaonitkul; Vaishnavi Gnanananthan; Divya Raj; Bojidar Rangelov; Alexandra L. Young; Yipeng Hu; Paul Taylor; Daniel C. Alexander; Joseph Jacob (Proceedings of 2022 International Conference on Medical Imaging and Computer-Aided Diagnosis, MICAD 2022, Leicester, UK, November 20-21, 2022, 2022)

Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction - Pierre Raillard; Lorenzo Cristoni; Andrew Walden; Roberto Lazzari; Thomas Pulimood; Louis Grandjean; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu; Zachary M. C. Baum (Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings, 2022)

The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation - Wen Yan; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; Dean C. Barratt; Bernard Chiu; Yipeng Hu (Applications of Medical Artificial Intelligence - First International Workshop, AMAI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings, 2022)

Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data - Zachary M. C. Baum; Tamas Ungi; Christopher Schlenger; Yipeng Hu; Dean C. Barratt (Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings, 2022)

Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy - Iani J. M. B. Gayo; Shaheer U. Saeed; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (Cancer Prevention Through Early Detection - First International Workshop, CaPTion 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings, 2022)

Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings, 2022)

Towards Multi-modal Self-supervised Video and Ultrasound Pose Estimation for Laparoscopic Liver Surgery - Nina Montaña Brown; João Ramalhinho; Bongjin Koo; Moustafa Allam; Brian R. Davidson; Kurinchi Gurusamy; Yipeng Hu; Matthew J. Clarkson (Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings, 2022)

Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration - Ziyi Shen; Qianye Yang; Yuming Shen; Francesco Giganti; Vasilis Stavrinides; Richard E. Fan; Caroline M. Moore; Mirabela Rusu; Geoffrey A. Sonn; Philip H. S. Torr; Dean C. Barratt; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part VI, 2022)

Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-supervised Segmentation - Mou-Cheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (Medical Image Computing and Computer Assisted Intervention - MICCAI 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part V, 2022)

Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings - Stephen R. Aylward; J. Alison Noble; Yipeng Hu; Su-Lin Lee; Zachary Baum; Zhe Min (Springer, 2022)

Cross-institution Male Pelvic Structures (Version 1) - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan Huisman; et al. (Zenodo, 2022)
Accessed on YYYY-MM-DD.

Freehand ultrasound without external trackers (Version v2) - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (Zenodo, 2022)
Accessed on YYYY-MM-DD.

Few-shot image segmentation for cross-institution male pelvic organs using registration-assisted prototypical learning - Yiwen Li; Yunguan Fu; Qianye Yang; Zhe Min; Wen Yan; Henkjan J. Huisman; Dean C. Barratt; Victor Adrian Prisacariu; Yipeng Hu (CoRR, 2022)

Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation - Shaheer U. Saeed; Wen Yan; Yunguan Fu; Francesco Giganti; Qianye Yang; Zachary M. C. Baum; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Mark Emberton; Dean C. Barratt; Yipeng Hu (CoRR, 2022)

VAFO-Loss: VAscular Feature Optimised Loss Function for Retinal Artery/Vein Segmentation - Yukun Zhou; Moucheng Xu; Yipeng Hu; Stefano B. Blumberg; An Zhao; Siegfried K. Wagner; Pearse A. Keane; Daniel C. Alexander (CoRR, 2022)

Image quality assessment for machine learning tasks using meta-reinforcement learning - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (CoRR, 2022)

The impact of using voxel-level segmentation metrics on evaluating multifocal prostate cancer localisation - Wen Yan; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; Dean C. Barratt; Bernard Chiu; Yipeng Hu (CoRR, 2022)

Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration - Ziyi Shen; Qianye Yang; Yuming Shen; Francesco Giganti; Vasilis Stavrinides; Richard E. Fan; Caroline M. Moore; Mirabela Rusu; Geoffrey A. Sonn; Philip H. S. Torr; Dean C. Barratt; Yipeng Hu (CoRR, 2022)

Strategising template-guided needle placement for MR-targeted prostate biopsy - Iani J. M. B. Gayo; Shaheer U. Saeed; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CoRR, 2022)

Learning Generalized Non-Rigid Multimodal Biomedical Image Registration from Generic Point Set Data - Zachary M. C. Baum; Tamas Ungi; Christopher Schlenger; Yipeng Hu; Dean C. Barratt (CoRR, 2022)

Meta-Registration: Learning Test-Time Optimization for Single-Pair Image Registration - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (CoRR, 2022)

Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction - Pierre Raillard; Lorenzo Cristoni; Andrew Walden; Roberto Lazzari; Thomas Pulimood; Louis Grandjean; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu; Zachary M. C. Baum (CoRR, 2022)

Cross-Modality Image Registration using a Training-Time Privileged Third Modality - Qianye Yang; David Atkinson; Yunguan Fu; Tom Syer; Wen Yan; Shonit Punwani; Matthew J. Clarkson; Dean C. Barratt; Tom Vercauteren; Yipeng Hu (CoRR, 2022)

Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-Supervised Segmentation - Mou-Cheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (CoRR, 2022)

Optimising Chest X-Rays for Image Analysis by Identifying and Removing Confounding Factors - Shahab Aslani; Watjana Lilaonitkul; Vaishnavi Gnanananthan; Divya Raj; Bojidar Rangelov; Alexandra L. Young; Yipeng Hu; Paul Taylor; Daniel C. Alexander; Joseph Jacob (CoRR, 2022)

Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study - Sulaiman Vesal; Iani J. M. B. Gayo; Indrani Bhattacharya; Shyam Natarajan; Leonard S. Marks; Dean C. Barratt; Richard E. Fan; Yipeng Hu; Geoffrey A. Sonn; Mirabela Rusu (CoRR, 2022)

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan J. Huisman; et al. (CoRR, 2022)

Meta-Learning Initializations for Interactive Medical Image Registration - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (CoRR, 2022)

MONAI: An open-source framework for deep learning in healthcare - M. Jorge Cardoso; Wenqi Li; Richard Brown; Nic Ma; Eric Kerfoot; Yiheng Wang; Benjamin Murray; Andriy Myronenko; Can Zhao; Dong Yang; Vishwesh Nath; Yufan He; et al. (CoRR, 2022)

Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames - Qi Li; Ziyi Shen; Qian Li; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (CoRR, 2022)

Active learning using adaptable task-based prioritisation - Shaheer U. Saeed; João Ramalhinho; Mark A. Pinnock; Ziyi Shen; Yunguan Fu; Nina Montaña Brown; Ester Bonmati; Dean C. Barratt; Stephen P. Pereira; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (CoRR, 2022)

Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver - Nina Montaña Brown; João Ramalhinho; Moustafa Allam; Brian R. Davidson; Yipeng Hu; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2021)

Real-time multimodal image registration with partial intraoperative point-set data - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (Medical Image Anal., 2021)

AI reflections in 2020 - Anna Jobin; Kingson Man; Antonio Damasio; Georgios Kaissis; Rickmer Braren; Julia Stoyanovich; Jay J. Van Bavel; Tessa V. West; Brent D. Mittelstadt; Jason Eshraghian; Marta R. Costa-jussà; Asaf Tzachor; et al. (Nat. Mach. Intell., 2021)

Few-shot Semantic Segmentation with Self-supervision from Pseudo-classes - Yiwen Li; Gratianus Wesley Putra Data; Yunguan Fu; Yipeng Hu; Victor Adrian Prisacariu (32nd British Machine Vision Conference 2021, BMVC 2021, Online, November 22-25, 2021, 2021)

Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection - Shaheer U. Saeed; Yunguan Fu; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Dean C. Barratt; Yipeng Hu (Information Processing in Medical Imaging - 27th International Conference, IPMI 2021, Virtual Event, June 28-June 30, 2021, Proceedings, 2021)

Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation - Qianye Yang; Tom Vercauteren; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Vasilis Stavrinides; Caroline M. Moore; Matthew J. Clarkson; Dean C. Barratt; Yipeng Hu (18th IEEE International Symposium on Biomedical Imaging, ISBI 2021, Nice, France, April 13-16, 2021, 2021)

Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels - Liam F. Chalcroft; Jiongqi Qu; Sophie A. Martin; Iani J. M. B. Gayo; Giulio V. Minore; Imraj R. D. Singh; Shaheer U. Saeed; Qianye Yang; Zachary M. C. Baum; André Altmann; Yipeng Hu (Simplifying Medical Ultrasound - Second International Workshop, ASMUS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings, 2021)

Lung Ultrasound Segmentation and Adaptation Between COVID-19 and Community-Acquired Pneumonia - Harry Mason; Lorenzo Cristoni; Andrew Walden; Roberto Lazzari; Thomas Pulimood; Louis Grandjean; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu; Zachary M. C. Baum (Simplifying Medical Ultrasound - Second International Workshop, ASMUS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings, 2021)

Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network - Alexander Grimwood; João Ramalhinho; Zachary M. C. Baum; Nina Montaña Brown; Gavin J. Johnson; Yipeng Hu; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt; Ester Bonmati (Simplifying Medical Ultrasound - Second International Workshop, ASMUS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings, 2021)

Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (Simplifying Medical Ultrasound - Second International Workshop, ASMUS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings, 2021)

Learning to Address Intra-segment Misclassification in Retinal Imaging - Yukun Zhou; Moucheng Xu; Yipeng Hu; Hongxiang Lin; Joseph Jacob; Pearse A. Keane; Daniel C. Alexander (Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part I, 2021)

Image quality assessment for closed-loop computer-assisted lung ultrasound - Zachary M. C. Baum; Ester Bonmati; Lorenzo Cristoni; Andrew Walden; Ferran Prados; Baris Kanber; Dean C. Barratt; David J. Hawkes; Geoff J. M. Parker; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu (Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, Online, February 15-20, 2021, 2021)

End-to-end forecasting of needle trajectory in percutaneous ablation - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, Online, February 15-20, 2021, 2021)

Combined 3D super-resolution, de-noising and partial volume correction for percutaneous ablation - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Medical Imaging 2021: Image Processing, Online, February 15-19, 2021, 2021)

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images - Zhe Min; Fernando J. Bianco; Qianye Yang; Rachael Rodell; Wen Yan; Dean C. Barratt; Yipeng Hu (Medical Image Understanding and Analysis - 25th Annual Conference, MIUA 2021, Oxford, United Kingdom, July 12-14, 2021, Proceedings, 2021)

Simplifying Medical Ultrasound - Second International Workshop, ASMUS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings - J. Alison Noble; Stephen R. Aylward; Alexander Grimwood; Zhe Min; Su-Lin Lee; Yipeng Hu (Springer, 2021)

Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation - Qianye Yang; Tom Vercauteren; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Vasilis Stavrinides; Caroline M. Moore; Matthew J. Clarkson; Dean C. Barratt; Yipeng Hu (CoRR, 2021)

Learning image quality assessment by reinforcing task amenable data selection - Shaheer U. Saeed; Yunguan Fu; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Dean C. Barratt; Yipeng Hu (CoRR, 2021)

Learning to Address Intra-segment Misclassification in Retinal Imaging - Yukun Zhou; Moucheng Xu; Yipeng Hu; Hongxiang Lin; Joseph Jacob; Pearse A. Keane; Daniel C. Alexander (CoRR, 2021)

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR images - Zhe Min; Fernando J. Bianco; Qianye Yang; Rachael Rodell; Wen Yan; Dean C. Barratt; Yipeng Hu (CoRR, 2021)

Lung Ultrasound Segmentation and Adaptation between COVID-19 and Community-Acquired Pneumonia - Harry Mason; Lorenzo Cristoni; Andrew Walden; Roberto Lazzari; Thomas Pulimood; Louis Grandjean; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu; Zachary M. C. Baum (CoRR, 2021)

Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labels - Liam F. Chalcroft; Jiongqi Qu; Sophie A. Martin; Iani J. M. B. Gayo; Giulio V. Minore; Imraj R. D. Singh; Shaheer U. Saeed; Qianye Yang; Zachary M. C. Baum; André Altmann; Yipeng Hu (CoRR, 2021)

Adaptable image quality assessment using meta-reinforcement learning of task amenability - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (CoRR, 2021)

Real-time multimodal image registration with partial intraoperative point-set data - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (CoRR, 2021)

Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (CoRR, 2021)

Few-shot Semantic Segmentation with Self-supervision from Pseudo-classes - Yiwen Li; Gratianus Wesley Putra Data; Yunguan Fu; Yipeng Hu; Victor Adrian Prisacariu (CoRR, 2021)

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease - Ashkan Pakzad; Wing Keung Cheung; Kin Quan; Nesrin Mogulkoc; Coline H. M. Van Moorsel; Brian J. Bartholmai; Hendrik W. Van Es; Alper Ezircan; Frouke Van Beek; Marcel Veltkamp; Ronald A. Karwoski; Tobias Peikert; et al. (CoRR, 2021)

DeepReg: a deep learning toolkit for medical image registration - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (J. Open Source Softw., 2020)

The challenges of deploying artificial intelligence models in a rapidly evolving pandemic - Yipeng Hu; Joseph Jacob; Geoffrey J. M. Parker; David J. Hawkes; John R. Hurst; Danail Stoyanov (Nat. Mach. Intell., 2020)

Cross-Device Cross-Anatomy Adaptation Network for Ultrasound Video Analysis - Qingchao Chen; Yang Liu; Yipeng Hu; Alice Self; Aris T. Papageorghiou; J. Alison Noble (Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings, 2020)

Multimodality Biomedical Image Registration Using Free Point Transformer Networks - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings, 2020)

Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination - Qianye Yang; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Qingchao Chen; J. Alison Noble; Tom Vercauteren; Dean C. Barratt; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part III, 2020)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification - Alex Grimwood; Helen McNair; Yipeng Hu; Ester Bonmati; Dean C. Barratt; Emma J. Harris (Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part III, 2020)

An Unsupervised Approach to Ultrasound Elastography with End-to-end Strain Regularisation - Rémi Delaunay; Yipeng Hu; Tom Vercauteren (Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part III, 2020)

Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes - Shaheer U. Saeed; Zeike A. Taylor; Mark A. Pinnock; Mark Emberton; Dean C. Barratt; Yipeng Hu (Medical Image Computing and Computer Assisted Intervention - MICCAI 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part IV, 2020)

Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - First International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4-8, 2020, Proceedings - Yipeng Hu; Roxane Licandro; J. Alison Noble; Jana Hutter; Stephen R. Aylward; Andrew Melbourne; Esra Abaci Turk; Jordina Torrents-Barrena (Springer, 2020)

DeepReg: a deep learning toolkit for medical image registration (Version v0.1.0) - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (Zenodo, 2020)
Accessed on YYYY-MM-DD.

The challenges of deploying artificial intelligence models in a rapidly evolving pandemic - Yipeng Hu; Joseph Jacob; Geoffrey J. M. Parker; David J. Hawkes; John R. Hurst; Danail Stoyanov (CoRR, 2020)

Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes - Shaheer U. Saeed; Zeike A. Taylor; Mark A. Pinnock; Mark Emberton; Dean C. Barratt; Yipeng Hu (CoRR, 2020)

Multimodality Biomedical Image Registration using Free Point Transformer Networks - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (CoRR, 2020)

Image quality assessment for closed-loop computer-assisted lung ultrasound - Zachary M. C. Baum; Ester Bonmati; Lorenzo Cristoni; Andrew Walden; Ferran Prados; Baris Kanber; Dean C. Barratt; David J. Hawkes; Geoffrey J. M. Parker; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu (CoRR, 2020)

Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination - Qianye Yang; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Qingchao Chen; J. Alison Noble; Tom Vercauteren; Dean C. Barratt; Yipeng Hu (CoRR, 2020)

Introduction to Medical Image Registration with DeepReg, Between Old and New - Nina Montaña Brown; Yunguan Fu; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alex Grimwood; Zhe Min; Ester Bonmati; Tom Vercauteren; Matthew J. Clarkson; et al. (CoRR, 2020)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification - Alexander Grimwood; Helen McNair; Yipeng Hu; Ester Bonmati; Dean C. Barratt; Emma J. Harris (CoRR, 2020)

DeepReg: a deep learning toolkit for medical image registration - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (CoRR, 2020)

Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration - Nooshin Ghavami; Yipeng Hu; Eli Gibson; Ester Bonmati; Mark Emberton; Caroline M. Moore; Dean C. Barratt (Medical Image Anal., 2019)

More Unlabelled Data or Label More Data? A Study on Semi-supervised Laparoscopic Image Segmentation - Yunguan Fu; Maria R. Robu; Bongjin Koo; Crispin Schneider; Stijn van Laarhoven; Danail Stoyanov; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data - First MICCAI Workshop, DART 2019, and First International Workshop, MIL3ID 2019, Shenzhen, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, 2019)

Conditional Segmentation in Lieu of Image Registration - Yipeng Hu; Eli Gibson; Dean C. Barratt; Mark Emberton; J. Alison Noble; Tom Vercauteren (Medical Image Computing and Computer Assisted Intervention - MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part II, 2019)

Conditional Segmentation in Lieu of Image Registration - Yipeng Hu; Eli Gibson; Dean C. Barratt; Mark Emberton; J. Alison Noble; Tom Vercauteren (CoRR, 2019)

More unlabelled data or label more data? A study on semi-supervised laparoscopic image segmentation - Yunguan Fu; Maria R. Robu; Bongjin Koo; Crispin Schneider; Stijn van Laarhoven; Danail Stoyanov; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (CoRR, 2019)

Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures - Ester Bonmati; Yipeng Hu; Eli Gibson; Laura Uribarri; Geri Keane; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2018)

NiftyNet: a deep-learning platform for medical imaging - Eli Gibson; Wenqi Li; Carole H. Sudre; Lucas Fidon; Dzhoshkun I. Shakir; Guotai Wang; Zach Eaton-Rosen; Robert J. Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; et al. (Comput. Methods Programs Biomed., 2018)

Weakly-supervised convolutional neural networks for multimodal image registration - Yipeng Hu; Marc Modat; Eli Gibson; Wenqi Li; Nooshin Ghavami; Ester Bonmati; Guotai Wang; Steven Bandula; Caroline M. Moore; Mark Emberton; Sébastien Ourselin; J. Alison Noble; et al. (Medical Image Anal., 2018)

Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (IEEE Trans. Medical Imaging, 2018)

Label-driven weakly-supervised learning for multimodal deformarle image registration - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (15th IEEE International Symposium on Biomedical Imaging, ISBI 2018, Washington, DC, USA, April 4-7, 2018, 2018)

Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning - Eli Gibson; Yipeng Hu; Nooshin Ghavami; Hashim Uddin Ahmed; Caroline M. Moore; Mark Emberton; Henkjan J. Huisman; Dean C. Barratt (Medical Image Computing and Computer Assisted Intervention - MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part IV, 2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks - Yipeng Hu; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; Tom Vercauteren; J. Alison Noble; Dean C. Barratt (Medical Image Computing and Computer Assisted Intervention - MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part I, 2018)

Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling, Houston, Texas, United States, 10-15 February 2018, 2018)

Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks - Nooshin Ghavami; Yipeng Hu; Ester Bonmati; Rachael Rodell; Eli Gibson; Caroline M. Moore; Dean C. Barratt (Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling, Houston, Texas, United States, 10-15 February 2018, 2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks - Yipeng Hu; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; Tom Vercauteren; J. Alison Noble; Dean C. Barratt (CoRR, 2018)

Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration - Yipeng Hu; Marc Modat; Eli Gibson; Wenqi Li; Nooshin Ghavami; Ester Bonmati; Guotai Wang; Steven Bandula; Caroline M. Moore; Mark Emberton; Sébastien Ourselin; J. Alison Noble; et al. (CoRR, 2018)

Designing image segmentation studies: Statistical power, sample size and reference standard quality - Eli Gibson; Yipeng Hu; Henkjan J. Huisman; Dean C. Barratt (Medical Image Anal., 2017)

Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy - Yipeng Hu; Veeru Kasivisvanathan; Lucy A. M. Simmons; Matthew J. Clarkson; Stephen A. Thompson; Taimur T. Shah; Hashim Uddin Ahmed; Shonit Punwani; David J. Hawkes; Mark Emberton; Caroline M. Moore; Dean C. Barratt (IEEE Trans. Biomed. Eng., 2017)

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks - Yipeng Hu; Eli Gibson; Li-Lin Lee; Weidi Xie; Dean C. Barratt; Tom Vercauteren; J. Alison Noble (Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - Fifth International Workshop, CMMI 2017, Second International Workshop, RAMBO 2017, and First International Workshop, SWITCH 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings, 2017)

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks - Yipeng Hu; Eli Gibson; Tom Vercauteren; Hashim Uddin Ahmed; Mark Emberton; Caroline M. Moore; J. Alison Noble; Dean C. Barratt (Medical Image Computing and Computer Assisted Intervention - MICCAI 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part II, 2017)

Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (Medical Image Computing and Computer Assisted Intervention - MICCAI 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part I, 2017)

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks - Yipeng Hu; Eli Gibson; Li-Lin Lee; Weidi Xie; Dean C. Barratt; Tom Vercauteren; J. Alison Noble (CoRR, 2017)

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks - Yipeng Hu; Eli Gibson; Tom Vercauteren; Hashim Uddin Ahmed; Mark Emberton; Caroline M. Moore; J. Alison Noble; Dean C. Barratt (CoRR, 2017)

NiftyNet: a deep-learning platform for medical imaging - Eli Gibson; Wenqi Li; Carole H. Sudre; Lucas Fidon; Dzhoshkun I. Shakir; Guotai Wang; Zach Eaton-Rosen; Robert J. Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; et al. (CoRR, 2017)

Label-driven weakly-supervised learning for multimodal deformable image registration - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (CoRR, 2017)

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (CoRR, 2017)

Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound - Ester Bonmati; Yipeng Hu; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (Computer-Assisted and Robotic Endoscopy - Third International Workshop, CARE 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Revised Selected Papers, 2016)

2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions - Yipeng Hu; Ester Bonmati; Eli Gibson; John H. Hipwell; David J. Hawkes; Steven Bandula; Stephen P. Pereira; Dean C. Barratt (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part I, 2016)

Impact of region contouring variability on image-based focal therapy evaluation - Eli Gibson; Ian A. Donaldson; Taimur T. Shah; Yipeng Hu; Hashim Uddin Ahmed; Dean C. Barratt (Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 27 February - 3 March 2016, 2016)

NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics - Stian Flage Johnsen; Zeike A. Taylor; Matthew J. Clarkson; John H. Hipwell; Marc Modat; Björn Eiben; Lianghao Han; Yipeng Hu; Thomy Mertzanidou; David J. Hawkes; Sébastien Ourselin (Int. J. Comput. Assist. Radiol. Surg., 2015)

Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics - Stian Flage Johnsen; Zeike A. Taylor; Lianghao Han; Yipeng Hu; Matthew J. Clarkson; David J. Hawkes; Sébastien Ourselin (Int. J. Comput. Assist. Radiol. Surg., 2015)

Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration - Yipeng Hu; Eli Gibson; Hashim Uddin Ahmed; Caroline M. Moore; Mark Emberton; Dean C. Barratt (Medical Image Anal., 2015)

Hybrid Decision Forests for Prostate Segmentation in Multi-channel MR Images - Qinquan Gao; Akshay Asthana; Tong Tong; Yipeng Hu; Daniel Rueckert; Philip J. Edwards (22nd International Conference on Pattern Recognition, ICPR 2014, Stockholm, Sweden, August 24-28, 2014, 2014)

Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension - Holger Roth; Jamie McClelland; Thomas Hampshire; Darren Boone; Yipeng Hu; Marc Modat; Hui Zhang; Sébastien Ourselin; Steve Halligan; David J. Hawkes (Abdominal Imaging. Computation and Clinical Applications - 5th International Workshop, Held in Conjunction with MICCAI 2013, Nagoya, Japan, September 22, 2013. Proceedings, 2013)

Surface-based prostate registration with biomechanical regularization - Wendy J. M. van de Ven; Yipeng Hu; Jelle O. Barentsz; Nico Karssemeijer; Dean C. Barratt; Henkjan J. Huisman (Medical Imaging 2013: Image-Guided Procedures, Robotic Interventions, and Modeling, Lake Buena Vista (Orlando Area), Florida, United States, 9-14 February 2013, 2013)

MR to ultrasound registration for image-guided prostate interventions - Yipeng Hu; Hashim Uddin Ahmed; Zeike A. Taylor; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (Medical Image Anal., 2012)

Modelling Prostate Motion for Data Fusion During Image-Guided Interventions - Yipeng Hu; Timothy J. Carter; Hashim Uddin Ahmed; Mark Emberton; Clare Allen; David J. Hawkes; Dean C. Barratt (IEEE Trans. Medical Imaging, 2011)

Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift - Yipeng Hu; Erik-Jan Rijkhorst; Richard Manber; David J. Hawkes; Dean C. Barratt (Medical Imaging and Augmented Reality - 5th International Workshop, MIAR 2010, Beijing, China, September 19-20, 2010. Proceedings, 2010)

MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions - Yipeng Hu; Hashim Uddin Ahmed; Clare Allen; Doug Pendsé; Mahua Sahu; Mark Emberton; David J. Hawkes; Dean C. Barratt (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part I, 2009)

Modelling Prostate Gland Motion for Image-Guided Interventions - Yipeng Hu; Dominic Morgan; Hashim Uddin Ahmed; Doug Pendsé; Mahua Sahu; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (Biomedical Simulation, 4th International Symposium, ISBMS 2008, London, UK, July 7-8, 2008, Proceedings, 2008)

A Statistical Motion Model Based on Biomechanical Simulations for Data Fusion during Image-Guided Prostate Interventions - Yipeng Hu; Dominic Morgan; Hashim Uddin Ahmed; Doug Pendsé; Mahua Sahu; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008, 11th International Conference, New York, NY, USA, September 6-10, 2008, Proceedings, Part I, 2008)