Cell type identification for single cell RNA data by bulk data reference projection - Oleg Sysoev; Danuta R. Gawel; Sandra Lilja; Samuel Schäfer; Mikael Benson (IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Houston, TX, USA, December 9-12, 2021, 2021)

LASSIM - A network inference toolbox for genome-wide mechanistic modeling - Rasmus Magnusson; Guido Pio Mariotti; Mattias Köpsén; William Lövfors; Danuta R. Gawel; Rebecka Jörnsten; Jörg Linde; Torbjörn E. M. Nordling; Elin Nyman; Sylvie Schulze; Colm E. Nestor; Huan Zhang; et al. (PLoS Comput. Biol., 2017)

Efficient prediction of human protein-protein interactions at a global scale - Andrew Schoenrock; Bahram Samanfar; Sylvain Pitre; Mohsen Hooshyar; Ke Jin; Charles A. Phillips; Hui Wang; Sadhna Phanse; Katayoun Omidi; Yuan Gui; Md Alamgir; Alex Wong; et al. (BMC Bioinform., 2014)

Differential Shannon entropy and differential coefficient of variation: alternatives and augmentations to differential expression in the search for disease-related genes - Kai Wang; Charles A. Phillips; Gary L. Rogers; Fredrik Barrenäs; Mikael Benson; Michael A. Langston (Int. J. Comput. Biol. Drug Des., 2014)

A systematic comparison of genome-scale clustering algorithms - Jeremy J. Jay; John D. Eblen; Yun Zhang; Mikael Benson; Andy D. Perkins; Arnold M. Saxton; Brynn H. Voy; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2012)

A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract) - Jeremy J. Jay; John D. Eblen; Yun Zhang; Mikael Benson; Andy D. Perkins; Arnold M. Saxton; Brynn H. Voy; Elissa J. Chesler; Michael A. Langston (Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings, 2011)

Network properties of human disease genes with pleiotropic effects - Sreenivas Chavali; Fredrik Barrenäs; Kartiek Kanduri; Mikael Benson (BMC Syst. Biol., 2010)

Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation - Marco Pedicini; Fredrik Barrenäs; Trevor Clancy; Filippo Castiglione; Eivind Hovig; Kartiek Kanduri; Daniele Santoni; Mikael Benson (PLoS Comput. Biol., 2010)

A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation - Reza Mobini; Bengt A. Andersson; Jonas Erjefält; Mirjana Hahn-Zoric; Michael A. Langston; Andy D. Perkins; Lars Cardell; Mikael Benson (BMC Syst. Biol., 2009)