NIGMS Sandbox: a learning platform toward democratizing cloud computing for biomedical research. - Lei, Ming; Matukumalli, Lakshmi K.; Arora, Krishan; Weber, Nick; Malashock, Rachel; Mao, Fenglou; Gregurick, Susan; Lorsch, Jon R. (Briefings Bioinform., 2024)

DOOR 2.0: presenting operons and their functions through dynamic and integrated views. - Mao, Xizeng; Ma, Qin; Zhou, Chuan; Chen, Xin; Zhang, Hanyuan; Yang, Jincai; Mao, Fenglou; Lai, Wei; Xu, Ying (Nucleic Acids Res., 2014)

Quartet decomposition server: a platform for analyzing phylogenetic trees. - Mao, Fenglou; Williams, David; Zhaxybayeva, Olga; Poptsova, Maria S.; Lapierre, Pascal; Gogarten, J. Peter; Xu, Ying (BMC Bioinform., 2012)

dbCAN: a web resource for automated carbohydrate-active enzyme annotation. - Yin, Yanbin; Mao, Xizeng; Yang, Jincai; Chen, Xin; Mao, Fenglou; Xu, Ying (Nucleic Acids Res., 2012)

Genome-wide discovery of missing genes in biological pathways of prokaryotes. - Chen, Yong; Mao, Fenglou; Li, Guojun; Xu, Ying (BMC Bioinform., 2011)

DOOR: a database for prokaryotic operons. - Mao, Fenglou; Dam, PhuongAn; Chou, Jacky; Olman, Victor; Xu, Ying (Nucleic Acids Res., 2009)

Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. - Olman, Victor; Mao, Fenglou; Wu, Hongwei; Xu, Ying (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

On application of directons to functional classification of genes in prokaryotes. - Wu, Hongwei; Mao, Fenglou; Olman, Victor; Xu, Ying (Comput. Biol. Chem., 2008)

An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. - Wu, Hongwei; Mao, Fenglou; Olman, Victor; Xu, Ying (2007)

Mapping of orthologous genes in the context of biological pathways: An application of integer programming. - Mao, Fenglou; Su, Zhengchang; Olman, Victor; Dam, PhuongAn; Liu, Zhijie; Xu, Ying (Proc. Natl. Acad. Sci. USA, 2006)

Understanding microbial genomic structures and applications to biological pathway inference. - Su, Zhengchang; Mao, Fenglou; Wu, Hongwei; Dam, PhuongAn; Chen, Xin; Jiang, Tao; Olman, Victor; Palenik, Brian; Xu, Ying (2006)

PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. - Yan, Bo; Qu, Youxing; Mao, Fenglou; Olman, Victor; Xu, Ying (J. Comput. Sci. Technol., 2005)

Accurate Prediction of Orthologous Gene Groups in Microbes. - Wu, Hongwei; Mao, Fenglou; Olman, Victor; Xu, Ying (2005)

Pathway Mapping with Operon Information: An Integer-Programming Method. - Mao, Fenglou; Su, Zhengchang; Olman, Victor; Chuang, David; Xu, Ying (2004)