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ORCIDBibTeX records: Steven M. Gallo
@article{DBLP:journals/concurrency/ChalkerFRDJSWPZ21,
author = {Alan Chalker and
Eric Franz and
Morgan E. Rodgers and
Trey Dockendorf and
Doug Johnson and
Doris Sajdak and
Joseph P. White and
Benjamin D. Plessinger and
Mohammad Zia and
Steven M. Gallo and
Robert E. Settlage and
David E. Hudak},
title = {Open OnDemand: State of the platform, project, and the future},
journal = {Concurr. Comput. Pract. Exp.},
volume = {33},
number = {19},
year = {2021},
url = {https://doi.org/10.1002/cpe.6114},
doi = {10.1002/CPE.6114},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/ChalkerFRDJSWPZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/SperhacG19,
author = {Jeanette M. Sperhac and
Steven M. Gallo},
title = {{VIDIA:} {A} HUBzero gateway for data analytics education},
journal = {Future Gener. Comput. Syst.},
volume = {94},
pages = {833--840},
year = {2019},
url = {https://doi.org/10.1016/j.future.2018.02.004},
doi = {10.1016/J.FUTURE.2018.02.004},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/SperhacG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/SperhacDFGIJPPP19,
author = {Jeanette M. Sperhac and
Robert L. DeLeon and
Thomas R. Furlani and
Steven M. Gallo and
Martins Innus and
Matthew D. Jones and
Jeffrey T. Palmer and
Abani K. Patra and
Benjamin D. Plessinger and
Ryan Rathsam and
Nikolay Simakov and
Joseph P. White and
Rudra Chakraborty and
Gregary Dean},
title = {Managing computational gateway resources with XDMoD},
journal = {Future Gener. Comput. Syst.},
volume = {98},
pages = {154--166},
year = {2019},
url = {https://doi.org/10.1016/j.future.2019.03.029},
doi = {10.1016/J.FUTURE.2019.03.029},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/SperhacDFGIJPPP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RiveraKGH19,
author = {John Rivera and
Soile V. E. Ker{\"{a}}nen and
Steven M. Gallo and
Marc S. Halfon},
title = {REDfly: the transcriptional regulatory element database for Drosophila},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D828--D834},
year = {2019},
url = {https://doi.org/10.1093/nar/gky957},
doi = {10.1093/NAR/GKY957},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RiveraKGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SettlageRLCFGH19,
author = {Robert E. Settlage and
Srijith Rajamohan and
Kevin Lahmers and
Alan Chalker and
Eric Franz and
Steven M. Gallo and
David E. Hudak},
editor = {Guido Juckeland and
Sunita Chandrasekaran},
title = {Portals for Interactive Steering of {HPC} Workflows},
booktitle = {Tools and Techniques for High Performance Computing - Selected Workshops,
HUST, {SE-HER} and WIHPC, Held in Conjunction with {SC} 2019, Denver,
CO, USA, November 17-18, 2019, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1190},
pages = {179--189},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-44728-1\_11},
doi = {10.1007/978-3-030-44728-1\_11},
timestamp = {Wed, 15 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/SettlageRLCFGH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/SettlageCFJGMH19,
author = {Robert E. Settlage and
Alan Chalker and
Eric Franz and
Douglas Johnson and
Steven M. Gallo and
Edgar Moore and
David E. Hudak},
editor = {Mich{\`{e}}le Weiland and
Guido Juckeland and
Sadaf R. Alam and
Heike Jagode},
title = {Open OnDemand: {HPC} for Everyone},
booktitle = {High Performance Computing - {ISC} High Performance 2019 International
Workshops, Frankfurt, Germany, June 16-20, 2019, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {11887},
pages = {504--513},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-34356-9\_38},
doi = {10.1007/978-3-030-34356-9\_38},
timestamp = {Thu, 19 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/supercomputer/SettlageCFJGMH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/ChourasiaSSG19,
author = {Amit Chourasia and
Scott Sakai and
Michael Shapiro and
Steven M. Gallo},
editor = {Thomas R. Furlani},
title = {Improving Science Gateways usage reporting for {XSEDE}},
booktitle = {Proceedings of the Practice and Experience in Advanced Research Computing
on Rise of the Machines (learning), {PEARC} 2019, Chicago, IL, USA,
July 28 - August 01, 2019},
pages = {109:1--109:4},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3332186.3338096},
doi = {10.1145/3332186.3338096},
timestamp = {Wed, 11 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/ChourasiaSSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/SperhacPPCDIRSW18,
author = {Jeanette M. Sperhac and
Benjamin D. Plessinger and
Jeffrey T. Palmer and
Rudra Chakraborty and
Gregary Dean and
Martins Innus and
Ryan Rathsam and
Nikolay Simakov and
Joseph P. White and
Thomas R. Furlani and
Steven M. Gallo and
Robert L. DeLeon and
Matthew D. Jones and
Cynthia D. Cornelius and
Abani K. Patra},
title = {Federating XDMoD to Monitor Affiliated Computing Resources},
booktitle = {{IEEE} International Conference on Cluster Computing, {CLUSTER} 2018,
Belfast, UK, September 10-13, 2018},
pages = {580--589},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/CLUSTER.2018.00074},
doi = {10.1109/CLUSTER.2018.00074},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/SperhacPPCDIRSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/WangLWFFDG18,
author = {Fugang Wang and
Gregor von Laszewski and
Timothy Whitson and
Geoffrey C. Fox and
Thomas R. Furlani and
Robert L. DeLeon and
Steven M. Gallo},
editor = {Sergiu Sanielevici},
title = {Evaluating the Scientific Impact of {XSEDE}},
booktitle = {Proceedings of the Practice and Experience on Advanced Research Computing,
{PEARC} 2018, Pittsburgh, PA, USA, July 22-26, 2018},
pages = {10:1--10:8},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3219104.3219124},
doi = {10.1145/3219104.3219124},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/WangLWFFDG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/SimakovDIJWGPF18,
author = {Nikolay A. Simakov and
Robert L. DeLeon and
Martins D. Innus and
Matthew D. Jones and
Joseph P. White and
Steven M. Gallo and
Abani K. Patra and
Thomas R. Furlani},
editor = {Sergiu Sanielevici},
title = {Slurm Simulator: Improving Slurm Scheduler Performance on Large {HPC}
systems by Utilization of Multiple Controllers and Node Sharing},
booktitle = {Proceedings of the Practice and Experience on Advanced Research Computing,
{PEARC} 2018, Pittsburgh, PA, USA, July 22-26, 2018},
pages = {25:1--25:8},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3219104.3219111},
doi = {10.1145/3219104.3219111},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/SimakovDIJWGPF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-04306,
author = {Nikolay A. Simakov and
Joseph P. White and
Robert L. DeLeon and
Steven M. Gallo and
Matthew D. Jones and
Jeffrey T. Palmer and
Benjamin D. Plessinger and
Thomas R. Furlani},
title = {A Workload Analysis of NSF's Innovative {HPC} Resources Using XDMoD},
journal = {CoRR},
volume = {abs/1801.04306},
year = {2018},
url = {http://arxiv.org/abs/1801.04306},
eprinttype = {arXiv},
eprint = {1801.04306},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-04306.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-04329,
author = {Nikolay A. Simakov and
Martins D. Innus and
Matthew D. Jones and
Joseph P. White and
Steven M. Gallo and
Robert L. DeLeon and
Thomas R. Furlani},
title = {Effect of Meltdown and Spectre Patches on the Performance of {HPC}
Applications},
journal = {CoRR},
volume = {abs/1801.04329},
year = {2018},
url = {http://arxiv.org/abs/1801.04329},
eprinttype = {arXiv},
eprint = {1801.04329},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-04329.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SimakovIJDWGPF17,
author = {Nikolay A. Simakov and
Martins D. Innus and
Matthew D. Jones and
Robert L. DeLeon and
Joseph P. White and
Steven M. Gallo and
Abani K. Patra and
Thomas R. Furlani},
editor = {Stephen A. Jarvis and
Steven A. Wright and
Simon D. Hammond},
title = {A Slurm Simulator: Implementation and Parametric Analysis},
booktitle = {High Performance Computing Systems. Performance Modeling, Benchmarking,
and Simulation - 8th International Workshop, {PMBS} 2017, Denver,
CO, USA, November 13, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10724},
pages = {197--217},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-72971-8\_10},
doi = {10.1007/978-3-319-72971-8\_10},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/SimakovIJDWGPF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/WhiteIJDSPGFSBK17,
author = {Joseph P. White and
Martins Innus and
Matthew D. Jones and
Robert L. DeLeon and
Nikolay Simakov and
Jeffrey T. Palmer and
Steven M. Gallo and
Thomas R. Furlani and
Michael T. Showerman and
Robert Brunner and
Andry Kot and
Gregory H. Bauer and
Brett M. Bode and
Jeremy Enos and
William T. Kramer},
editor = {David L. Hart and
Maytal Dahan},
title = {Challenges of Workload Analysis on Large {HPC} Systems: {A} Case Study
on {NCSA} Blue Waters},
booktitle = {Proceedings of the Practice and Experience in Advanced Research Computing
2017: Sustainability, Success and Impact, {PEARC} 2017, New Orleans,
LA, USA, July 9-13, 2017},
pages = {6:1--6:8},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3093338.3093348},
doi = {10.1145/3093338.3093348},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/WhiteIJDSPGFSBK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/FultonGHYBDFSL17,
author = {Ben Fulton and
Steven M. Gallo and
Robert Henschel and
Thomas Yearke and
Katy B{\"{o}}rner and
Robert L. DeLeon and
Thomas R. Furlani and
Craig A. Stewart and
Matthew R. Link},
editor = {David L. Hart and
Maytal Dahan},
title = {XDMoD Value Analytics: {A} Tool for Measuring the Financial and Intellectual
{ROI} of Your Campus Cyberinfrastructure Facilities},
booktitle = {Proceedings of the Practice and Experience in Advanced Research Computing
2017: Sustainability, Success and Impact, {PEARC} 2017, New Orleans,
LA, USA, July 9-13, 2017},
pages = {49:1--49:7},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3093338.3093358},
doi = {10.1145/3093338.3093358},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/FultonGHYBDFSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/JonesWIDSPGFSBK17,
author = {Matthew D. Jones and
Joseph P. White and
Martins Innus and
Robert L. DeLeon and
Nikolay Simakov and
Jeffrey T. Palmer and
Steven M. Gallo and
Thomas R. Furlani and
Michael T. Showerman and
Robert Brunner and
Andry Kot and
Gregory H. Bauer and
Brett M. Bode and
Jeremy Enos and
William T. Kramer},
title = {Workload Analysis of Blue Waters},
journal = {CoRR},
volume = {abs/1703.00924},
year = {2017},
url = {http://arxiv.org/abs/1703.00924},
eprinttype = {arXiv},
eprint = {1703.00924},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/JonesWIDSPGFSBK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuCZWFGD16,
author = {Biao Liu and
Jessica L. Childs{-}Disney and
Brent M. Znosko and
Dan Wang and
Mohammad Fallahi and
Steven M. Gallo and
Matthew D. Disney},
title = {Analysis of secondary structural elements in human microRNA hairpin
precursors},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {112},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-0960-6},
doi = {10.1186/S12859-016-0960-6},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuCZWFGD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/SimakovDWFIGJPP16,
author = {Nikolay A. Simakov and
Robert L. DeLeon and
Joseph P. White and
Thomas R. Furlani and
Martins Innus and
Steven M. Gallo and
Matthew D. Jones and
Abani K. Patra and
Benjamin D. Plessinger and
Jeanette M. Sperhac and
Thomas Yearke and
Ryan Rathsam and
Jeffrey T. Palmer},
title = {A Quantitative Analysis of Node Sharing on {HPC} Clusters Using XDMoD
Application Kernels},
booktitle = {Proceedings of the {XSEDE16} Conference on Diversity, Big Data, and
Science at Scale, Miami, USA, July 17-21, 2016},
pages = {32:1--32:8},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2949550.2949553},
doi = {10.1145/2949550.2949553},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/SimakovDWFIGJPP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/SimakovWDGFJGP15,
author = {Nikolay A. Simakov and
Joseph P. White and
Robert L. DeLeon and
Amin Ghadersohi and
Thomas R. Furlani and
Matthew D. Jones and
Steven M. Gallo and
Abani K. Patra},
title = {Application kernels: {HPC} resources performance monitoring and variance
analysis},
journal = {Concurr. Comput. Pract. Exp.},
volume = {27},
number = {17},
pages = {5238--5260},
year = {2015},
url = {https://doi.org/10.1002/cpe.3564},
doi = {10.1002/CPE.3564},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/SimakovWDGFJGP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cse/PalmerGFJDWSPSY15,
author = {Jeffrey T. Palmer and
Steven M. Gallo and
Thomas R. Furlani and
Matthew D. Jones and
Robert L. DeLeon and
Joseph P. White and
Nikolay Simakov and
Abani K. Patra and
Jeanette M. Sperhac and
Thomas Yearke and
Ryan Rathsam and
Martins Innus and
Cynthia D. Cornelius and
James C. Browne and
William L. Barth and
Richard Todd Evans},
title = {Open XDMoD: {A} Tool for the Comprehensive Management of High-Performance
Computing Resources},
journal = {Comput. Sci. Eng.},
volume = {17},
number = {4},
pages = {52--62},
year = {2015},
url = {https://doi.org/10.1109/MCSE.2015.68},
doi = {10.1109/MCSE.2015.68},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cse/PalmerGFJDWSPSY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/LaszewskiWFHFDG15,
author = {Gregor von Laszewski and
Fugang Wang and
Geoffrey Charles Fox and
David L. Hart and
Thomas R. Furlani and
Robert L. DeLeon and
Steven M. Gallo},
title = {Peer Comparison of {XSEDE} and {NCAR} Publication Data},
booktitle = {2015 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2015, Chicago, IL, USA, September 8-11, 2015},
pages = {531--532},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/CLUSTER.2015.98},
doi = {10.1109/CLUSTER.2015.98},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/LaszewskiWFHFDG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/GalloWDFNPJPSSI15,
author = {Steven M. Gallo and
Joseph P. White and
Robert L. DeLeon and
Thomas R. Furlani and
Helen Ngo and
Abani K. Patra and
Matthew D. Jones and
Jeffrey T. Palmer and
Nikolay Simakov and
Jeanette M. Sperhac and
Martins Innus and
Thomas Yearke and
Ryan Rathsam},
title = {Analysis of XDMoD/SUPReMM Data Using Machine Learning Techniques},
booktitle = {2015 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2015, Chicago, IL, USA, September 8-11, 2015},
pages = {642--649},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/CLUSTER.2015.114},
doi = {10.1109/CLUSTER.2015.114},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/GalloWDFNPJPSSI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/DeLeonFGWJPIYPS15,
author = {Robert L. DeLeon and
Thomas R. Furlani and
Steven M. Gallo and
Joseph P. White and
Matthew D. Jones and
Abani K. Patra and
Martins Innus and
Thomas Yearke and
Jeffrey T. Palmer and
Jeanette M. Sperhac and
Ryan Rathsam and
Nikolay Simakov and
Gregor von Laszewski and
Fugang Wang},
editor = {Gregory D. Peterson},
title = {{TAS} view of {XSEDE} users and usage},
booktitle = {Proceedings of the 2015 {XSEDE} Conference: Scientific Advancements
Enabled by Enhanced Cyberinfrastructure, St. Louis, MO, USA, July
26 - 30, 2015},
pages = {21:1--21:8},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2792745.2792766},
doi = {10.1145/2792745.2792766},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/DeLeonFGWJPIYPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/BrowneDPBHJFSGGGPSIBWCYMLW14,
author = {James C. Browne and
Robert L. DeLeon and
Abani K. Patra and
William L. Barth and
John L. Hammond and
Matthew D. Jones and
Thomas R. Furlani and
Barry I. Schneider and
Steven M. Gallo and
Amin Ghadersohi and
Ryan J. Gentner and
Jeffrey T. Palmer and
Nikolay Simakov and
Martins Innus and
Andrew E. Bruno and
Joseph P. White and
Cynthia D. Cornelius and
Thomas Yearke and
Kyle Marcus and
Gregor von Laszewski and
Fugang Wang},
title = {Comprehensive, open-source resource usage measurement and analysis
for {HPC} systems},
journal = {Concurr. Comput. Pract. Exp.},
volume = {26},
number = {13},
pages = {2191--2209},
year = {2014},
url = {https://doi.org/10.1002/cpe.3245},
doi = {10.1002/CPE.3245},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/BrowneDPBHJFSGGGPSIBWCYMLW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/EvansBBDFGJP14,
author = {R. Todd Evans and
William L. Barth and
James C. Browne and
Robert L. DeLeon and
Thomas R. Furlani and
Steven M. Gallo and
Matthew D. Jones and
Abani K. Patra},
editor = {Christopher Bording and
Andy Georges},
title = {Comprehensive resource use monitoring for {HPC} systems with {TACC}
stats},
booktitle = {Proceedings of the First International Workshop on {HPC} User Support
Tools, {HUST} '14, New Orleans, Louisiana, USA, November 16-21, 2014},
pages = {13--21},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/HUST.2014.7},
doi = {10.1109/HUST.2014.7},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/EvansBBDFGJP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/WangLFFDG14,
author = {Fugang Wang and
Gregor von Laszewski and
Geoffrey Charles Fox and
Thomas R. Furlani and
Robert L. DeLeon and
Steven M. Gallo},
editor = {Scott Lathrop and
Jay Alameda},
title = {Towards a Scientific Impact Measuring Framework for Large Computing
Facilities - a Case Study on {XSEDE}},
booktitle = {Annual Conference of the Extreme Science and Engineering Discovery
Environment, {XSEDE} '14, Atlanta, GA, {USA} - July 13 - 18, 2014},
pages = {25:1--25:8},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2616498.2616507},
doi = {10.1145/2616498.2616507},
timestamp = {Thu, 22 May 2025 13:16:49 +0200},
biburl = {https://dblp.org/rec/conf/xsede/WangLFFDG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/WhiteDFGJGCPBBH14,
author = {Joseph P. White and
Robert L. DeLeon and
Thomas R. Furlani and
Steven M. Gallo and
Matthew D. Jones and
Amin Ghadersohi and
Cynthia D. Cornelius and
Abani K. Patra and
James C. Browne and
William L. Barth and
John L. Hammond},
editor = {Scott Lathrop and
Jay Alameda},
title = {An Analysis of Node Sharing on {HPC} Clusters using XDMoD/TACC{\_}Stats},
booktitle = {Annual Conference of the Extreme Science and Engineering Discovery
Environment, {XSEDE} '14, Atlanta, GA, {USA} - July 13 - 18, 2014},
pages = {31:1--31:8},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2616498.2616533},
doi = {10.1145/2616498.2616533},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/WhiteDFGJGCPBBH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/FurlaniJGBLGGPDLWZ13,
author = {Thomas R. Furlani and
Matthew D. Jones and
Steven M. Gallo and
Andrew E. Bruno and
Charng{-}Da Lu and
Amin Ghadersohi and
Ryan J. Gentner and
Abani K. Patra and
Robert L. DeLeon and
Gregor von Laszewski and
Fugang Wang and
Ann Zimmerman},
title = {Performance metrics and auditing framework using application kernels
for high-performance computer systems},
journal = {Concurr. Comput. Pract. Exp.},
volume = {25},
number = {7},
pages = {918--931},
year = {2013},
url = {https://doi.org/10.1002/cpe.2871},
doi = {10.1002/CPE.2871},
timestamp = {Sat, 31 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/FurlaniJGBLGGPDLWZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/BrowneDLJGGPBHFM13,
author = {James C. Browne and
Robert L. DeLeon and
Charng{-}Da Lu and
Matthew D. Jones and
Steven M. Gallo and
Amin Ghadersohi and
Abani K. Patra and
William L. Barth and
John L. Hammond and
Thomas R. Furlani and
Robert T. McLay},
editor = {William Gropp and
Satoshi Matsuoka},
title = {Enabling comprehensive data-driven system management for large computational
facilities},
booktitle = {International Conference for High Performance Computing, Networking,
Storage and Analysis, SC'13, Denver, CO, {USA} - November 17 - 21,
2013},
pages = {86:1--86:11},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2503210.2503230},
doi = {10.1145/2503210.2503230},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/BrowneDLJGGPBHFM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/FurlaniSJTHGDLGGPLWPS13,
author = {Thomas R. Furlani and
Barry I. Schneider and
Matthew D. Jones and
John Towns and
David L. Hart and
Steven M. Gallo and
Robert L. DeLeon and
Charng{-}Da Lu and
Amin Ghadersohi and
Ryan J. Gentner and
Abani K. Patra and
Gregor von Laszewski and
Fugang Wang and
Jeffrey T. Palmer and
Nikolay Simakov},
editor = {Nancy Wilkins{-}Diehr},
title = {Using XDMoD to facilitate {XSEDE} operations, planning and analysis},
booktitle = {Extreme Science and Engineering Discovery Environment: Gateway to
Discovery, XSEDE13, San Diego, CA, {USA} - July 22 - 25, 2013},
pages = {46:1--46:8},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2484762.2484763},
doi = {10.1145/2484762.2484763},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/FurlaniSJTHGDLGGPLWPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/LuBDHBFGJP13,
author = {Charng{-}Da Lu and
James C. Browne and
Robert L. DeLeon and
John L. Hammond and
William L. Barth and
Thomas R. Furlani and
Steven M. Gallo and
Matthew D. Jones and
Abani K. Patra},
editor = {Nancy Wilkins{-}Diehr},
title = {Comprehensive job level resource usage measurement and analysis for
{XSEDE} {HPC} systems},
booktitle = {Extreme Science and Engineering Discovery Environment: Gateway to
Discovery, XSEDE13, San Diego, CA, {USA} - July 22 - 25, 2013},
pages = {50:1--50:8},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2484762.2484781},
doi = {10.1145/2484762.2484781},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/LuBDHBFGJP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jclinbioinf/GronostajskiGLG11,
author = {Richard M. Gronostajski and
Joseph Guaneri and
Dong Lee and
Steven M. Gallo},
title = {The NFI-Regulome Database: {A} tool for annotation and analysis of
control regions of genes regulated by Nuclear Factor {I} transcription
factors},
journal = {J. Clin. Bioinform.},
volume = {1},
pages = {4},
year = {2011},
url = {https://doi.org/10.1186/2043-9113-1-4},
doi = {10.1186/2043-9113-1-4},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jclinbioinf/GronostajskiGLG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GalloGMSSBH11,
author = {Steven M. Gallo and
Dave T. Gerrard and
David Miner and
Michael Simich and
Benjamin Des Soye and
Casey M. Bergman and
Marc S. Halfon},
title = {REDfly v3.0: toward a comprehensive database of transcriptional regulatory
elements in \emph{Drosophila}},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {118--123},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq999},
doi = {10.1093/NAR/GKQ999},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GalloGMSSBH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tg/FurlaniJGBLGGPD11,
author = {Thomas R. Furlani and
Matthew D. Jones and
Steven M. Gallo and
Andrew E. Bruno and
Charng{-}Da Lu and
Amin Ghadersohi and
Ryan J. Gentner and
Abani K. Patra and
Robert L. DeLeon and
Gregor von Laszewski and
Lizhe Wang and
Ann Zimmerman},
editor = {John Towns and
Shawn Brown and
Daniel S. Katz},
title = {Performance metrics and auditing framework for high performance computer
systems},
booktitle = {Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery,
{TG} '11, Salt Lake City, Utah, USA, July 18-21, 2011},
pages = {16:1},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2016741.2016759},
doi = {10.1145/2016741.2016759},
timestamp = {Sat, 31 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/tg/FurlaniJGBLGGPD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hipc/DelmericoBBJGC09,
author = {Jeffrey A. Delmerico and
Nathanial A. Byrnes and
Andrew E. Bruno and
Matthew D. Jones and
Steven M. Gallo and
Vipin Chaudhary},
editor = {Yuanyuan Yang and
Manish Parashar and
Rajeev Muralidhar and
Viktor K. Prasanna},
title = {Comparing the performance of clusters, Hadoop, and Active Disks on
microarray correlation computations},
booktitle = {16th International Conference on High Performance Computing, HiPC
2009, December 16-19, 2009, Kochi, India, Proceedings},
pages = {378--387},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/HIPC.2009.5433190},
doi = {10.1109/HIPC.2009.5433190},
timestamp = {Sat, 31 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hipc/DelmericoBBJGC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GriffithMBCKAMSBHGGGHLBTLPDRWBVHWHBJ08,
author = {Obi L. Griffith and
Stephen B. Montgomery and
Bridget Bernier and
Bryan Chu and
Katayoon Kasaian and
Stein Aerts and
Shaun Mahony and
Monica C. Sleumer and
Mikhail Bilenky and
Maximilian Haeussler and
Malachi Griffith and
Steven M. Gallo and
Belinda Giardine and
Bart Hooghe and
Peter Van Loo and
Enrique Blanco and
Amy Ticoll and
Stuart Lithwick and
Elodie Portales{-}Casamar and
Ian J. Donaldson and
Gordon Robertson and
Claes Wadelius and
Pieter J. De Bleser and
Dominique Vlieghe and
Marc S. Halfon and
Wyeth W. Wasserman and
Ross C. Hardison and
Casey M. Bergman and
Steven J. M. Jones},
title = {ORegAnno: an open-access community-driven resource for regulatory
annotation},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {107--113},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm967},
doi = {10.1093/NAR/GKM967},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/GriffithMBCKAMSBHGGGHLBTLPDRWBVHWHBJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HalfonGB08,
author = {Marc S. Halfon and
Steven M. Gallo and
Casey M. Bergman},
title = {REDfly 2.0: an integrated database of \emph{cis}-regulatory modules
and transcription factor binding sites in \emph{Drosophila}},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {594--598},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm876},
doi = {10.1093/NAR/GKM876},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HalfonGB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aina/WaltersCCGG08,
author = {John Paul Walters and
Vipin Chaudhary and
Minsuk Cha and
Salvatore Guercio Jr. and
Steven M. Gallo},
title = {A Comparison of Virtualization Technologies for {HPC}},
booktitle = {22nd International Conference on Advanced Information Networking and
Applications, {AINA} 2008, GinoWan, Okinawa, Japan, March 25-28, 2008},
pages = {861--868},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/AINA.2008.45},
doi = {10.1109/AINA.2008.45},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aina/WaltersCCGG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/MillerBCGG08,
author = {Russ Miller and
Jonathan J. Bednasz and
Kenneth Chiu and
Steven M. Gallo and
Madhusudhan Govindaraju},
title = {Grid-based research, development, and deployment in New York State},
booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
pages = {1--8},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IPDPS.2008.4536205},
doi = {10.1109/IPDPS.2008.4536205},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/MillerBCGG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispa/BednaszGMRW07,
author = {Jonathan J. Bednasz and
Steven M. Gallo and
Russ Miller and
Catherine L. Ruby and
Charles M. Weeks},
editor = {Parimala Thulasiraman and
Xubin He and
Tony Li Xu and
Mieso K. Denko and
Ruppa K. Thulasiram and
Laurence Tianruo Yang},
title = {Grid Computing in New York State, {USA}},
booktitle = {Frontiers of High Performance Computing and Networking {ISPA} 2007
Workshops, {ISPA} 2007 International Workshops SSDSN, UPWN, WISH,
SGC, ParDMCom, HiPCoMB, and {IST-AWSN} Niagara Falls, Canada, August
28 - September 1, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4743},
pages = {273--284},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74767-3\_29},
doi = {10.1007/978-3-540-74767-3\_29},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/ispa/BednaszGMRW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GalloLHH06,
author = {Steven M. Gallo and
Long Li and
Zihua Hu and
Marc S. Halfon},
title = {\emph{REDfly: } a Regulatory Element Database for \emph{Drosophila}},
journal = {Bioinform.},
volume = {22},
number = {3},
pages = {381--383},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti794},
doi = {10.1093/BIOINFORMATICS/BTI794},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GalloLHH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grid/GreenGM04,
author = {Mark L. Green and
Steven M. Gallo and
Russ Miller},
editor = {Rajkumar Buyya},
title = {Grid-Enabled Virtual Organization Based Dynamic Firewall},
booktitle = {5th International Workshop on Grid Computing {(GRID} 2004), 8 November
2004, Pittsburgh, PA, USA, Proceedings},
pages = {208--216},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/GRID.2004.35},
doi = {10.1109/GRID.2004.35},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grid/GreenGM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/GalloMW96,
author = {Steven M. Gallo and
Russ Miller and
Charles M. Weeks},
title = {The Design of a Portable Scientific Tool: {A} Case Study Using SnB},
booktitle = {Proceedings of the 1996 {ACM/IEEE} Conference on Supercomputing, November
17-22, 1996, Pittsburgh, PA, {USA}},
pages = {3},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.ieeecomputersociety.org/10.1109/SC.1996.45},
doi = {10.1109/SC.1996.45},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/GalloMW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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