BSXplorer: analytical framework for exploratory analysis of BS-seq data. - Yuditskiy, Konstantin; Bezdvornykh, Igor; Kazantseva, Anastasiya; Kanapin, Alexander; Samsonova, Anastasia (BMC Bioinform., 2024)

Data Intensive Analysis Approaches in Genomics and Proteomics: ELIXIR Initiatives. - Kanapin, Alexander (2015)

Reactome knowledgebase of human biological pathways and processes. - Matthews, Lisa; Gopinath, Gopal; Gillespie, Marc; Caudy, Michael; Croft, David; Bono, Bernard de; Garapati, Phani V.; Hemish, Jill; Hermjakob, Henning; Jassal, Bijay; Kanapin, Alexander; Lewis, Suzanna; et al. (Nucleic Acids Res., 2009)

New developments in the InterPro database. - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Teresa K.; Bairoch, Amos; Bateman, Alex; Binns, David; Bork, Peer; Buillard, Virginie; Cerutti, Lorenzo; Copley, Richard R.; Courcelle, Emmanuel; Das, Ujjwal; et al. (Nucleic Acids Res., 2007)

InterPro, progress and status in 2005. - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Teresa K.; Bairoch, Amos; Bateman, Alex; Binns, David; Bradley, Paul; Bork, Peer; Bucher, Phillip; Cerutti, Lorenzo; Copley, Richard R.; Courcelle, Emmanuel; et al. (Nucleic Acids Res., 2005)

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. - Kersey, Paul J.; Bower, Lawrence; Morris, Lorna; Horne, Alan; Petryszak, Robert; Kanz, Carola; Kanapin, Alexander; Das, Ujjwal; Michoud, Karine; Phan, Isabelle; Gattiker, Alexandre; Kulikova, Tamara; et al. (Nucleic Acids Res., 2005)

Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation. - Soinov, Lev; Kanapin, Alexander; Kapushesky, Misha (2004)

The InterPro Database, 2003 brings increased coverage and new features. - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Terri K.; Bairoch, Amos; Barrell, Daniel; Bateman, Alex; Binns, David; Biswas, Margaret; Bradley, Paul; Bork, Peer; Bucher, Philipp; Copley, Richard R.; et al. (Nucleic Acids Res., 2003)

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. - Pruess, Manuela; Fleischmann, Wolfgang; Kanapin, Alexander; Karavidopoulou, Youla; Kersey, Paul J.; Kriventseva, Evgenia V.; Mittard, Virginie; Mulder, Nicola J.; Phan, Isabelle; Servant, Florence; Apweiler, Rolf (Nucleic Acids Res., 2003)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Terri K.; Bairoch, Amos; Bateman, Alex; Binns, David; Biswas, Margaret; Bradley, Paul; Bork, Peer; Bucher, Philipp; Copley, Richard R.; Courcelle, Emmanuel; et al. (Briefings Bioinform., 2002)

Applications of InterPro in Protein Annotation and Genome Analysis. - Biswas, Margaret; O'Rourke, Joseph F.; Camon, Evelyn; Fraser, Gillian; Kanapin, Alexander; Karavidopoulou, Youla; Kersey, Paul J.; Kriventseva, Evgenia V.; Mittard, Virginie; Mulder, Nicola J.; Phan, Isabelle; Servant, Florence; et al. (Briefings Bioinform., 2002)

Interactive InterPro-based comparisons of proteins in whole genomes. - Kanapin, Alexander; Apweiler, Rolf; Biswas, Margaret; Fleischmann, Wolfgang; Karavidopoulou, Youla; Kersey, Paul J.; Kriventseva, Evgenia V.; Mittard, Virginie; Mulder, Nicola J.; Oinn, Thomas M.; Phan, Isabelle; Servant, Florence; et al. (Bioinform., 2002)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites. - Apweiler, Rolf; Attwood, Terri K.; Bairoch, Amos; Bateman, Alex; Birney, Ewan; Biswas, Margaret; Bucher, Philipp; Cerutti, Lorenzo; Corpet, Florence; Croning, Michael D. R.; Durbin, Richard; Falquet, Laurent; et al. (Nucleic Acids Res., 2001)

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. - Apweiler, Rolf; Biswas, Margaret; Fleischmann, Wolfgang; Kanapin, Alexander; Karavidopoulou, Youla; Kersey, Paul J.; Kriventseva, Evgenia V.; Mittard, Virginie; Mulder, Nicola J.; Phan, Isabelle; Zdobnov, Evgeni M. (Nucleic Acids Res., 2001)

InterPro-an integrated documentation resource for protein families, domains and functional sites. - Apweiler, Rolf; Attwood, Terri K.; Bairoch, Amos; Bateman, Alex; Birney, Ewan; Biswas, Margaret; Bucher, Philipp; Cerutti, Lorenzo; Corpet, Florence; Croning, Michael D. R.; Durbin, Richard; Falquet, Laurent; et al. (Bioinform., 2000)

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. - Biswas, Margaret; Apweiler, Rolf; Fleischmann, Wolfgang; Kanapin, Alexander; Karavidopoulou, Youla; Kersey, Paul J.; Kriventseva, Evgenia V.; Mittard, Virginie; Mulder, Nicola J.; Oinn, Thomas M.; Phan, Isabelle; Zdobnov, Evgeni M. (2000)