ChAsE: chromatin analysis and exploration tool - Hamid Younesy; Cydney B. Nielsen; Matthew C. Lorincz; Steven J. M. Jones; Mohammad M. Karimi; Torsten Möller (Bioinform., 2016)

Highlights from the 5th Symposium on Biological Data Visualization: Part 1 - Jan Aerts; G. Elisabeta Marai; Kay Nieselt; Cydney B. Nielsen; Marc Streit; Daniel Weiskopf (BMC Bioinform., 2015)

An Interactive Analysis and Exploration Tool for Epigenomic Data - Hamid Younesy; Cydney B. Nielsen; Torsten Möller; Olivia Alder; Rebecca Cullum; Matthew C. Lorincz; Mohammad M. Karimi; Steven J. M. Jones (Comput. Graph. Forum, 2013)

Variant View: Visualizing Sequence Variants in their Gene Context - Joel A. Ferstay; Cydney B. Nielsen; Tamara Munzner (IEEE Trans. Vis. Comput. Graph., 2013)

De novo transcriptome assembly with ABySS - Inanç Birol; Shaun D. Jackman; Cydney B. Nielsen; Jenny Q. Qian; Richard Varhol; Greg Stazyk; Ryan D. Morin; Yongjun Zhao; Martin Hirst; Jacqueline E. Schein; Douglas E. Horsman; Joseph M. Connors; et al. (Bioinform., 2009)

ABySS-Explorer: Visualizing Genome Sequence Assemblies - Cydney B. Nielsen; Shaun D. Jackman; Inanç Birol; Steven J. M. Jones (IEEE Trans. Vis. Comput. Graph., 2009)