MicroVQA: A Multimodal Reasoning Benchmark for Microscopy-Based Scientific Research. - Burgess, James; Nirschl, Jeffrey J.; Bravo-Sánchez, Laura; Lozano, Alejandro; Gupte, Sanket Rajan; Galaz-Montoya, Jesus G.; Zhang, Yuhui; Su, Yuchang; Bhowmik, Disha; Coman, Zachary; Hasan, Sarina M.; Johannesson, Alexandra; et al. (2025)

BIOMEDICA: An Open Biomedical Image-Caption Archive, Dataset, and Vision-Language Models Derived from Scientific Literature. - Lozano, Alejandro; Sun, Min Woo; Burgess, James; Chen, Liangyu; Nirschl, Jeffrey J.; Gu, Jeffrey; Lopez, Ivan; Aklilu, Josiah; Rau, Anita; Katzer, Austin Wolfgang; Zhang, Yuhui; Chiu, Collin; et al. (2025)

Automated Generation of Challenging Multiple-Choice Questions for Vision Language Model Evaluation. - Zhang, Yuhui; Su, Yuchang; Liu, Yiming; Wang, Xiaohan; Burgess, James; Sui, Elaine; Wang, Chenyu; Aklilu, Josiah; Lozano, Alejandro; Wei, Anjiang; Schmidt, Ludwig; Yeung-Levy, Serena (2025)

Video Action Differencing. - Burgess, James; Wang, Xiaohan; Zhang, Yuhui; Rau, Anita; Lozano, Alejandro; Dunlap, Lisa; Darrell, Trevor; Yeung-Levy, Serena (2025)

Automated Generation of Challenging Multiple-Choice Questions for Vision Language Model Evaluation. - Zhang, Yuhui; Su, Yuchang; Liu, Yiming; Wang, Xiaohan; Burgess, James; Sui, Elaine; Wang, Chenyu; Aklilu, Josiah; Lozano, Alejandro; Wei, Anjiang; Schmidt, Ludwig; Yeung-Levy, Serena (CoRR, 2025)

BIOMEDICA: An Open Biomedical Image-Caption Archive, Dataset, and Vision-Language Models Derived from Scientific Literature. - Lozano, Alejandro; Sun, Min Woo; Burgess, James; Chen, Liangyu; Nirschl, Jeffrey J.; Gu, Jeffrey; Lopez, Ivan; Aklilu, Josiah; Katzer, Austin Wolfgang; Chiu, Collin; Rau, Anita; Wang, Xiaohan; et al. (CoRR, 2025)

CellFlow: Simulating Cellular Morphology Changes via Flow Matching. - Zhang, Yuhui; Su, Yuchang; Wang, Chenyu; Li, Tianhong; Wefers, Zoe; Nirschl, Jeffrey J.; Burgess, James; Ding, Daisy; Lozano, Alejandro; Lundberg, Emma; Yeung-Levy, Serena (CoRR, 2025)

Video Action Differencing. - Burgess, James; Wang, Xiaohan; Zhang, Yuhui; Rau, Anita; Lozano, Alejandro; Dunlap, Lisa; Darrell, Trevor; Yeung-Levy, Serena (CoRR, 2025)

MicroVQA: A Multimodal Reasoning Benchmark for Microscopy-Based Scientific Research. - Burgess, James; Nirschl, Jeffrey J.; Bravo-Sánchez, Laura; Lozano, Alejandro; Gupte, Sanket Rajan; Galaz-Montoya, Jesus G.; Zhang, Yuhui; Su, Yuchang; Bhowmik, Disha; Coman, Zachary; Hasan, Sarina M.; Johannesson, Alexandra; et al. (CoRR, 2025)

A Large-Scale Vision-Language Dataset Derived from Open Scientific Literature to Advance Biomedical Generalist AI. - Lozano, Alejandro; Sun, Min Woo; Burgess, James; Nirschl, Jeffrey J.; Polzak, Christopher; Zhang, Yuhui; Chen, Liangyu; Gu, Jeffrey; Lopez, Ivan; Aklilu, Josiah; Rau, Anita; Katzer, Austin Wolfgang; et al. (CoRR, 2025)

Can Large Language Models Match the Conclusions of Systematic Reviews? - Polzak, Christopher; Lozano, Alejandro; Sun, Min Woo; Burgess, James; Zhang, Yuhui; Wu, Kevin; Yeung-Levy, Serena (CoRR, 2025)

Viewpoint Textual Inversion: Discovering Scene Representations and 3D View Control in 2D Diffusion Models. - Burgess, James; Wang, Kuan-Chieh; Yeung-Levy, Serena (2024)

Micro-Bench: A Microscopy Benchmark for Vision-Language Understanding. - Lozano, Alejandro; Nirschl, Jeffrey J.; Burgess, James; Gupte, Sanket Rajan; Zhang, Yuhui; Unell, Alyssa; Yeung, Serena (2024)

μ-Bench: A Vision-Language Benchmark for Microscopy Understanding. - Lozano, Alejandro; Nirschl, Jeffrey J.; Burgess, James; Gupte, Sanket Rajan; Zhang, Yuhui; Unell, Alyssa; Yeung-Levy, Serena (CoRR, 2024)

Viewpoint Textual Inversion: Unleashing Novel View Synthesis with Pretrained 2D Diffusion Models. - Burgess, James; Wang, Kuan-Chieh; Yeung, Serena (CoRR, 2023)

popsynth: A generic astrophysical population synthesis framework. - Burgess, James; Capel, Francesca (J. Open Source Softw., 2021)

Magnetically tracked bone screws for image guided intervention. - Glossop, Neil D.; Cleary, Kevin; Burgess, James; Corral, Gabriela (2004)

Cerebral Aneurysm Hemodynamics Modeling from 3D Rotational Angiography. - Cebral, Juan R.; Castro, Marcelo Adrián; Burgess, James; Putman, Christopher M. (2004)

Experiments in nonsmooth control of distributed manipulation. - Murphey, Todd D.; Burdick, Joel W.; Burgess, James; Homyk, Andrew (2003)