FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare. - Lekadir, Karim; Feragen, Aasa; Fofanah, Abdul Joseph; Frangi, Alejandro F.; Buyx, Alena; Emelie, Anais; Lara, Andrea; Porras, Antonio R.; Chan, An-Wen; Navarro, Arcadi; Glocker, Ben; Botwe, Benard Ohene; et al. (CoRR, 2023)

Recommendations for machine learning validation in biology. - Walsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Harrow, Jen; Psomopoulos, Fotis E.; Tosatto, Silvio C. E. (CoRR, 2020)

GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions. - Walsh, Ian; Nguyen-Khuong, Terry; Wongtrakul-Kish, Katherine; Tay, Shi Jie; Chew, Daniel; José, Tasha; Taron, Christopher H.; Rudd, Pauline M. (Bioinform., 2019)

GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions. - Walsh, Ian; Nguyen-Khuong, Terry; Wongtrakul-Kish, Katherine; Tay, Shi Jie; Chew, Daniel; José, Tasha; Taron, Christopher H.; Rudd, Pauline M. (Bioinform., 2019)

GlycoStore: a database of retention properties for glycan analysis. - Zhao, Sophie; Walsh, Ian; Abrahams, Jodie L.; Royle, Louise; Nguyen-Khuong, Terry; Spencer, Daniel; Fernandes, Daryl L.; Packer, Nicolle H.; Rudd, Pauline M.; Campbell, Matthew P. (Bioinform., 2018)

FELLS: fast estimator of latent local structure. - Piovesan, Damiano; Walsh, Ian; Minervini, Giovanni; Tosatto, Silvio C. E. (Bioinform., 2017)

Correct machine learning on protein sequences: a peer-reviewing perspective. - Walsh, Ian; Pollastri, Gianluca; Tosatto, Silvio C. E. (Briefings Bioinform., 2016)

Comprehensive large-scale assessment of intrinsic protein disorder. - Walsh, Ian; Giollo, Manuel; Domenico, Tomás Di; Ferrari, Carlo; Zimmermann, Olav; Tosatto, Silvio C. E. (Bioinform., 2015)

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins. - Potenza, Emilio; Domenico, Tomás Di; Walsh, Ian; Tosatto, Silvio C. E. (Nucleic Acids Res., 2015)

Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks. - Kukic, Predrag; Mirabello, Claudio; Tradigo, Giuseppe; Walsh, Ian; Veltri, Pierangelo; Pollastri, Gianluca (BMC Bioinform., 2014)

RepeatsDB: a database of tandem repeat protein structures. - Domenico, Tomás Di; Potenza, Emilio; Walsh, Ian; Parra, R. Gonzalo; Giollo, Manuel; Minervini, Giovanni; Piovesan, Damiano; Ihsan, Awais; Ferrari, Carlo; Kajava, Andrey V.; Tosatto, Silvio C. E. (Nucleic Acids Res., 2014)

PASTA 2.0: an improved server for protein aggregation prediction. - Walsh, Ian; Seno, Flavio; Tosatto, Silvio C. E.; Trovato, Antonio (Nucleic Acids Res., 2014)

Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database. - Domenico, Tomás Di; Walsh, Ian; Tosatto, Silvio C. E. (BMC Bioinform., 2013)

ESpritz: accurate and fast prediction of protein disorder. - Walsh, Ian; Martin, Alberto J. M.; Domenico, Tomás Di; Tosatto, Silvio C. E. (Bioinform., 2012)

MobiDB: a comprehensive database of intrinsic protein disorder annotations. - Domenico, Tomás Di; Walsh, Ian; Martin, Alberto J. M.; Tosatto, Silvio C. E. (Bioinform., 2012)

Bluues server: electrostatic properties of wild-type and mutated protein structures. - Walsh, Ian; Minervini, Giovanni; Corazza, Alessandra; Esposito, Gennaro; Tosatto, Silvio C. E.; Fogolari, Federico (Bioinform., 2012)

RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures. - Walsh, Ian; Sirocco, Francesco; Minervini, Giovanni; Domenico, Tomás Di; Ferrari, Carlo; Tosatto, Silvio C. E. (Bioinform., 2012)

RING: networking interacting residues, evolutionary information and energetics in protein structures. - Martin, Alberto J. M.; Vidotto, Michele; Boscariol, Filippo; Domenico, Tomás Di; Walsh, Ian; Tosatto, Silvio C. E. (Bioinform., 2011)

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs. - Walsh, Ian; Martin, Alberto J. M.; Domenico, Tomás Di; Vullo, Alessandro; Pollastri, Gianluca; Tosatto, Silvio C. E. (Nucleic Acids Res., 2011)

MOBI: a web server to define and visualize structural mobility in NMR protein ensembles. - Martin, Alberto J. M.; Walsh, Ian; Tosatto, Silvio C. E. (Bioinform., 2010)

Ab initio and homology based prediction of protein domains by recursive neural networks. - Walsh, Ian; Martin, Alberto J. M.; Mooney, Catherine; Rubagotti, Enrico; Vullo, Alessandro; Pollastri, Gianluca (BMC Bioinform., 2009)

Recursive Neural Networks for Undirected Graphs for Learning Molecular Endpoints. - Walsh, Ian; Vullo, Alessandro; Pollastri, Gianluca (2009)

An adaptive model for learning molecular endpoints. - Walsh, Ian; Vullo, Alessandro; Pollastri, Gianluca (2009)

Long-Range Information and Physicality Constraints Improve predicted protein Contact Maps. - Martin, Alberto J. M.; Baù, Davide; Vullo, Alessandro; Walsh, Ian; Pollastri, Gianluca (J. Bioinform. Comput. Biol., 2008)

A two-stage approach for improved prediction of residue contact maps. - Vullo, Alessandro; Walsh, Ian; Pollastri, Gianluca (BMC Bioinform., 2006)

Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins. - Baù, Davide; Martin, Alberto J. M.; Mooney, Catherine; Vullo, Alessandro; Walsh, Ian; Pollastri, Gianluca (BMC Bioinform., 2006)