FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare - Karim Lekadir; Aasa Feragen; Abdul Joseph Fofanah; Alejandro F. Frangi; Alena Buyx; Anais Emelie; Andrea Lara; Antonio R. Porras; An-Wen Chan; Arcadi Navarro; Ben Glocker; Benard Ohene Botwe; et al. (CoRR, 2023)

Recommendations for machine learning validation in biology - Ian Walsh; Dmytro Fishman; Dario Garcia-Gasulla; Tiina Titma; Jen Harrow; Fotis E. Psomopoulos; Silvio C. E. Tosatto (CoRR, 2020)

GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions - Ian Walsh; Terry Nguyen-Khuong; Katherine Wongtrakul-Kish; Shi Jie Tay; Daniel Chew; Tasha José; Christopher H. Taron; Pauline M. Rudd (Bioinform., 2019)

GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions - Ian Walsh; Terry Nguyen-Khuong; Katherine Wongtrakul-Kish; Shi Jie Tay; Daniel Chew; Tasha José; Christopher H. Taron; Pauline M. Rudd (Bioinform., 2019)

GlycoStore: a database of retention properties for glycan analysis - Sophie Zhao; Ian Walsh; Jodie L. Abrahams; Louise Royle; Terry Nguyen-Khuong; Daniel Spencer; Daryl L. Fernandes; Nicolle H. Packer; Pauline M. Rudd; Matthew P. Campbell (Bioinform., 2018)

FELLS: fast estimator of latent local structure - Damiano Piovesan; Ian Walsh; Giovanni Minervini; Silvio C. E. Tosatto (Bioinform., 2017)

Correct machine learning on protein sequences: a peer-reviewing perspective - Ian Walsh; Gianluca Pollastri; Silvio C. E. Tosatto (Briefings Bioinform., 2016)

Comprehensive large-scale assessment of intrinsic protein disorder - Ian Walsh; Manuel Giollo; Tomás Di Domenico; Carlo Ferrari; Olav Zimmermann; Silvio C. E. Tosatto (Bioinform., 2015)

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins - Emilio Potenza; Tomás Di Domenico; Ian Walsh; Silvio C. E. Tosatto (Nucleic Acids Res., 2015)

Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks - Predrag Kukic; Claudio Mirabello; Giuseppe Tradigo; Ian Walsh; Pierangelo Veltri; Gianluca Pollastri (BMC Bioinform., 2014)

RepeatsDB: a database of tandem repeat protein structures - Tomás Di Domenico; Emilio Potenza; Ian Walsh; R. Gonzalo Parra; Manuel Giollo; Giovanni Minervini; Damiano Piovesan; Awais Ihsan; Carlo Ferrari; Andrey V. Kajava; Silvio C. E. Tosatto (Nucleic Acids Res., 2014)

PASTA 2.0: an improved server for protein aggregation prediction - Ian Walsh; Flavio Seno; Silvio C. E. Tosatto; Antonio Trovato (Nucleic Acids Res., 2014)

Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database - Tomás Di Domenico; Ian Walsh; Silvio C. E. Tosatto (BMC Bioinform., 2013)

ESpritz: accurate and fast prediction of protein disorder - Ian Walsh; Alberto J. M. Martin; Tomás Di Domenico; Silvio C. E. Tosatto (Bioinform., 2012)

MobiDB: a comprehensive database of intrinsic protein disorder annotations - Tomás Di Domenico; Ian Walsh; Alberto J. M. Martin; Silvio C. E. Tosatto (Bioinform., 2012)

Bluues server: electrostatic properties of wild-type and mutated protein structures - Ian Walsh; Giovanni Minervini; Alessandra Corazza; Gennaro Esposito; Silvio C. E. Tosatto; Federico Fogolari (Bioinform., 2012)

RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures - Ian Walsh; Francesco Sirocco; Giovanni Minervini; Tomás Di Domenico; Carlo Ferrari; Silvio C. E. Tosatto (Bioinform., 2012)

RING: networking interacting residues, evolutionary information and energetics in protein structures - Alberto J. M. Martin; Michele Vidotto; Filippo Boscariol; Tomás Di Domenico; Ian Walsh; Silvio C. E. Tosatto (Bioinform., 2011)

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs - Ian Walsh; Alberto J. M. Martin; Tomás Di Domenico; Alessandro Vullo; Gianluca Pollastri; Silvio C. E. Tosatto (Nucleic Acids Res., 2011)

MOBI: a web server to define and visualize structural mobility in NMR protein ensembles - Alberto J. M. Martin; Ian Walsh; Silvio C. E. Tosatto (Bioinform., 2010)

Ab initio and homology based prediction of protein domains by recursive neural networks - Ian Walsh; Alberto J. M. Martin; Catherine Mooney; Enrico Rubagotti; Alessandro Vullo; Gianluca Pollastri (BMC Bioinform., 2009)

Recursive Neural Networks for Undirected Graphs for Learning Molecular Endpoints - Ian Walsh; Alessandro Vullo; Gianluca Pollastri (Pattern Recognition in Bioinformatics, 4th IAPR International Conference, PRIB 2009, Sheffield, UK, September 7-9, 2009. Proceedings, 2009)

An adaptive model for learning molecular endpoints - Ian Walsh; Alessandro Vullo; Gianluca Pollastri (Similarity-based learning on structures, 15.02. - 20.02.2009, 2009)

Long-Range Information and Physicality Constraints Improve predicted protein Contact Maps - Alberto J. M. Martin; Davide Baù; Alessandro Vullo; Ian Walsh; Gianluca Pollastri (J. Bioinform. Comput. Biol., 2008)

A two-stage approach for improved prediction of residue contact maps - Alessandro Vullo; Ian Walsh; Gianluca Pollastri (BMC Bioinform., 2006)

Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins - Davide Baù; Alberto J. M. Martin; Catherine Mooney; Alessandro Vullo; Ian Walsh; Gianluca Pollastri (BMC Bioinform., 2006)