A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. - Pan, Chongle; Park, Byung-Hoon; McDonald, William H.; Carey, Patricia A.; Banfield, Jillian F.; Verberkmoes, Nathan; Hettich, Robert L.; Samatova, Nagiza F. (BMC Bioinform., 2010)

An analysis pipeline for the inference of protein-protein interaction networks. - Taylor, Ronald C.; Singhal, Mudita; Daly, Don Simone; Gilmore, Jason M.; Cannon, William R.; Domico, Kelly; White, Amanda M.; Auberry, Deanna L.; Auberry, Kenneth J.; Hooker, Brian; Hurst, Gregory B.; McDermott, Jason E.; et al. (Int. J. Data Min. Bioinform., 2009)

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. - Taylor, Ronald C.; Singhal, Mudita; Daly, Don Simone; Domico, Kelly; White, Amanda M.; Auberry, Deanna L.; Auberry, Kenneth J.; Hooker, Brian; Hurst, Gregory B.; McDermott, Jason E.; McDonald, W. Hayes; Pelletier, Dale; et al. (2007)

Automatic Quality Assessment of Peptide Tandem Mass Spectra. - Bern, Marshall W.; Goldberg, David; McDonald, W. Hayes; Yates, John R., III (2004)