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2020 – today
- 2020
[j8]Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann
, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora:
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020)
2010 – 2019
- 2019
- [j7]Lars Feuerbach, Lina Sieverling, Katharina I. Deeg, Philip Ginsbach, Barbara Hutter, Ivo Buchhalter, Paul A. Northcott, Sadaf S. Mughal, Priya Chudasama, Hanno Glimm, Claudia Scholl, Peter Lichter, Stefan Fröhling, Stefan M. Pfister, David T. W. Jones, Karsten Rippe, Benedikt Brors:
TelomereHunter - in silico estimation of telomere content and composition from cancer genomes. BMC Bioinform. 20(1): 272:1-272:11 (2019) - [j6]Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König:
Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach. BMC Bioinform. 20(1): 737 (2019) - [j5]Christian Ritter, Thomas Wollmann, Patrick Bernhard, Manuel Gunkel, Delia M. Braun, Ji Young Lee, Jan Meiners, Ronald Simon, Guido Sauter, Holger Erfle, Karsten Rippe, Ralf Bartenschlager, Karl Rohr:
Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells. Int. J. Comput. Assist. Radiol. Surg. 14(11): 1847-1857 (2019) - [j4]Thomas Wollmann, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr:
GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation. Medical Image Anal. 56: 68-79 (2019) - [c8]Thomas Wollmann, Patrick Bernhard, Manuel Gunkel, Delia M. Braun, Jan Meiners, Ronald Simon, Guido Sauter, Holger Erfle, Karsten Rippe, Karl Rohr:
Black-Box Hyperparameter Optimization for Nuclei Segmentation in Prostate Tissue Images. Bildverarbeitung für die Medizin 2019: 345-350 - 2018
- [c7]Thomas Wollmann, Julia Ivanova, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr:
Multi-channel Deep Transfer Learning for Nuclei Segmentation in Glioblastoma Cell Tissue Images. Bildverarbeitung für die Medizin 2018: 316-321 - [c6]D. Baltissen, Thomas Wollmann, Manuel Gunkel, Inn Chung, Holger Erfle, Karsten Rippe, Karl Rohr:
Comparison of segmentation methods for tissue microscopy images of glioblastoma cells. ISBI 2018: 396-399 - [c5]Qi Gao, Simon Eck, Jessica Matthias, Inn Chung, Jessica Engelhardt, Karsten Rippe, Karl Rohr:
Bayesian joint super-resolution, deconvolution, and denoising of images with Poisson-Gaussian noise. ISBI 2018: 938-942 - 2016
- [j3]Simon Eck, Stefan Wörz, Katharina Müller-Ott, Matthias Hahn, Andreas Biesdorf, Gunnar Schotta, Karsten Rippe, Karl Rohr:
A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci. Medical Image Anal. 32: 18-31 (2016) - 2014
- [c4]Simon Eck, Stefan Wörz, Katharina Müller-Ott, Matthias Hahn, Gunnar Schotta, Karsten Rippe, Karl Rohr:
3D shape analysis of heterochromatin foci based on a 3D spherical harmonics intensity model. Medical Imaging: Image Processing 2014: 90340X - 2013
- [j2]Robert Schöpflin, Vladimir B. Teif, Oliver Müller, Christin Weinberg, Karsten Rippe, Gero Wedemann:
Modeling nucleosome position distributions from experimental nucleosome positioning maps. Bioinform. 29(19): 2380-2386 (2013) - [c3]Simon Eck, Stefan Wörz, Andreas Biesdorf, Katharina Müller-Ott, Karsten Rippe, Karl Rohr:
Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model. Bildverarbeitung für die Medizin 2013: 308-313 - [c2]Simon Eck, Karl Rohr, Andreas Biesdorf, Katharina Müller-Ott, Karsten Rippe, Stefan Wörz:
A 3D intensity model based on spherical harmonics for automatic 3D segmentation of heterochromatin foci. ISBI 2013: 1484-1487 - 2012
- [j1]Vladimir B. Teif, Karsten Rippe:
Calculating transcription factor binding maps for chromatin. Briefings Bioinform. 13(2): 187-201 (2012) - [c1]Simon Eck, Karl Rohr, Katharina Müller-Ott, Karsten Rippe, Stefan Wörz:
Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Co-Localization Analysis of Heterochromatin Foci. Bildverarbeitung für die Medizin 2012: 9-14
Coauthor Index
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