Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions - Hamid Safizadeh; Scott W. Simpkins; Justin Nelson; Sheena C. Li; Jeff S. Piotrowski; Mami Yoshimura; Yoko Yashiroda; Hiroyuki Hirano; Hiroyuki Osada; Minoru Yoshida; Charles Boone; Chad L. Myers (J. Chem. Inf. Model., 2021)

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action - Justin Nelson; Scott W. Simpkins; Hamid Safizadeh; Sheena C. Li; Jeff S. Piotrowski; Hiroyuki Hirano; Yoko Yashiroda; Hiroyuki Osada; Minoru Yoshida; Charles Boone; Chad L. Myers (Bioinform., 2018)

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions - Scott W. Simpkins; Justin Nelson; Raamesh Deshpande; Sheena C. Li; Jeff S. Piotrowski; Erin H. Wilson; Abraham A. Gebre; Hamid Safizadeh; Reika Okamoto; Mami Yoshimura; Michael Costanzo; Yoko Yashiroda; et al. (PLoS Comput. Biol., 2018)

Analysis of Barcode sequence features to find anomalies due to amplification Bias - Chandrima Sarkar; Raamesh Deshpande; Chad L. Myers (CoRR, 2014)

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens - Omar Wagih; Matej Usaj; Anastasia Baryshnikova; Benjamin VanderSluis; Elena Kuzmin; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Leopold Parts (Nucleic Acids Res., 2013)

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing - Recep Colak; TaeHyung Kim; Magali Michaut; Mark G. F. Sun; Manuel Irimia; Jeremy Bellay; Chad L. Myers; Benjamin J. Blencowe; Philip M. Kim (PLoS Comput. Biol., 2013)

Protein Complexes are Central in the Yeast Genetic Landscape - Magali Michaut; Anastasia Baryshnikova; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Gary D. Bader (PLoS Comput. Biol., 2011)

DRYGIN: a database of quantitative genetic interaction networks in yeast - Judice L. Y. Koh; Huiming Ding; Michael Costanzo; Anastasia Baryshnikova; Kiana Toufighi; Gary D. Bader; Chad L. Myers; Brenda J. Andrews; Charles Boone (Nucleic Acids Res., 2010)

An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions - Gaurav Pandey; Bin Zhang; Aaron N. Chang; Chad L. Myers; Jun Zhu; Vipin Kumar; Eric E. Schadt (PLoS Comput. Biol., 2010)

A Scalable Approach for Discovering Conserved Active Subnetworks across Species - Raamesh Deshpande; Shikha Sharma; Catherine M. Verfaillie; Wei-Shou Hu; Chad L. Myers (PLoS Comput. Biol., 2010)

Subspace Differential Coexpression Analysis: Problem Definition and a General Approach - Gang Fang; Rui Kuang; Gaurav Pandey; Michael S. Steinbach; Chad L. Myers; Vipin Kumar (Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010, 2010)

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Amy A. Caudy; David C. Hess; Olga G. Troyanskaya (Bioinform., 2009)

Incorporating functional inter-relationships into protein function prediction algorithms - Gaurav Pandey; Chad L. Myers; Vipin Kumar (BMC Bioinform., 2009)

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis - Matthew A. Hibbs; Chad L. Myers; Curtis Huttenhower; David C. Hess; Kai Li; Amy A. Caudy; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Characterization of systems-level organization through mining large-scale genetic interaction networks - Jeremy Bellay; Benjamin VanderSluis; Yungil Kim; Sunayan Bandyopadhyay; Chad L. Myers (2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2009, Minneapolis, MN, USA, May 17-21, 2009, 2009)

An association analysis approach to biclustering - Gaurav Pandey; Gowtham Atluri; Michael S. Steinbach; Chad L. Myers; Vipin Kumar (Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Paris, France, June 28 - July 1, 2009, 2009)

A Genomewide Functional Network for the Laboratory Mouse - Yuanfang Guan; Chad L. Myers; Rong Lu; Ihor Lemischka; Carol J. Bult; Olga G. Troyanskaya (PLoS Comput. Biol., 2008)

Context-sensitive data integration and prediction of biological networks - Chad L. Myers; Olga G. Troyanskaya (Bioinform., 2007)

Exploring the functional landscape of gene expression: directed search of large microarray compendia - Matthew A. Hibbs; David C. Hess; Chad L. Myers; Curtis Huttenhower; Kai Li; Olga G. Troyanskaya (Bioinform., 2007)

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods - Curtis Huttenhower; Avi I. Flamholz; Jessica N. Landis; Sauhard Sahi; Chad L. Myers; Kellen L. Olszewski; Matthew A. Hibbs; Nathan O. Siemers; Olga G. Troyanskaya; Hilary A. Coller (BMC Bioinform., 2007)

A scalable method for integration and functional analysis of multiple microarray datasets - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Olga G. Troyanskaya (Bioinform., 2006)

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool - Rachel S. G. Sealfon; Matthew A. Hibbs; Curtis Huttenhower; Chad L. Myers; Olga G. Troyanskaya (BMC Bioinform., 2006)

Visualization-based discovery and analysis of genomic aberrations in microarray data - Chad L. Myers; Xing Chen; Olga G. Troyanskaya (BMC Bioinform., 2005)

A recursive QR approach to adaptive equalization of time-varying MIMO channels - Sun-Yuan Kung; Chad L. Myers; Xinying Zhang (Commun. Inf. Syst., 2005)

Accurate detection of aneuploidies in array CGH and gene expression microarray data - Chad L. Myers; Maitreya J. Dunham; Sun-Yuan Kung; Olga G. Troyanskaya (Bioinform., 2004)

A recursive QR approach to semi-blind equalization of time-varying MIMO channels - Sun-Yuan Kung; Chad L. Myers; Xinying Zhang (2004 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2004, Montreal, Quebec, Canada, May 17-21, 2004, 2004)

Cross-weighted Fisher discriminant analysis for visualization of DNA microarray data - Xinying Zhang; Chad L. Myers; Sun-Yuan Kung (2004 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2004, Montreal, Quebec, Canada, May 17-21, 2004, 2004)