WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans. - Snoek, Basten L.; Sterken, Mark G.; Hartanto, Margi; Zuilichem, Albert-Jan van; Kammenga, Jan E.; Ridder, Dick de; Nijveen, Harm (Database J. Biol. Databases Curation, 2020)

GeneNetwork: framework for web-based genetics. - Sloan, Zachary; Arends, Danny; Broman, Karl W.; Centeno, Arthur; Furlotte, Nicholas A.; Nijveen, Harm; Yan, Lei; Zhou, Xiang; Williams, Robert W.; Prins, Pjotr (J. Open Source Softw., 2016)

CyLineUp: A Cytoscape app for visualizing data in network small multiples. - Costa, Maria Cecília D.; Slijkhuis, Thijs; Ligterink, Wilco; Hilhorst, Henk W. M.; Ridder, Dick de; Nijveen, Harm (F1000Research, 2016)

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks. - Kuzniar, Arnold; Dhir, Somdutta; Nijveen, Harm; Pongor, Sándor; Leunissen, Jack A. M. (Bioinform., 2015)

Understanding and identifying amino acid repeats. - Luo, Hong; Nijveen, Harm (Briefings Bioinform., 2014)

Obituary: In memory of Jack Leunissen. - Luo, Jingchu; Nijveen, Harm; Attwood, Teresa K.; Judge, David Phillip; Pongor, Sándor; Landsman, David; Bishop, Martin J. (Briefings Bioinform., 2013)

QualitySNPng: a user-friendly SNP detection and visualization tool. - Nijveen, Harm; Kaauwen, Martijn van; Esselink, Danny G.; Hoegen, Brechtje; Vosman, Ben (Nucleic Acids Res., 2013)

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins. - Luo, Hong; Lin, Ke; David, Audrey; Nijveen, Harm; Leunissen, Jack A. M. (Nucleic Acids Res., 2012)

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks. - Kuzniar, Arnold; Dhir, Somdutta; Nijveen, Harm; Pongor, Sándor; Leunissen, Jack A. M. (Bioinform., 2010)

ProGMap: an integrated annotation resource for protein orthology. - Kuzniar, Arnold; Lin, Ke; He, Ying; Nijveen, Harm; Pongor, Sándor; Leunissen, Jack A. M. (Nucleic Acids Res., 2009)

Primer3Plus, an enhanced web interface to Primer3. - Untergasser, Andreas; Nijveen, Harm; Rao, Xiangyu; Bisseling, Ton; Geurts, René; Leunissen, Jack A. M. (Nucleic Acids Res., 2007)

TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. - Alako, Blaise T. F.; Rainey, Daphne; Nijveen, Harm; Leunissen, Jack A. M. (Nucleic Acids Res., 2006)