JBCB, the first decade. - Wooley, John C.; Li, Ming; Wong, Limsoon (J. Bioinform. Comput. Biol., 2014)

Ultrafast clustering algorithms for metagenomic sequence analysis. - Li, Weizhong; Fu, Limin; Niu, Beifang; Wu, Sitao; Wooley, John C. (Briefings Bioinform., 2012)

TOPSAN: a dynamic web database for structural genomics. - Ellrott, Kyle; Zmasek, Christian M.; Weekes, Dana; Krishna, S. Sri; Bakolitsa, Constantina; Godzik, Adam; Wooley, John C. (Nucleic Acids Res., 2011)

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. - Sun, Shulei; Chen, Jing; Li, Weizhong; Altintas, Ilkay; Lin, Abel W.; Peltier, Steven; Stocks, Karen I.; Allen, Eric E.; Ellisman, Mark H.; Grethe, Jeffrey S.; Wooley, John C. (Nucleic Acids Res., 2011)

TOPSAN: a collaborative annotation environment for structural genomics. - Weekes, Dana; Krishna, S. Sri; Bakolitsa, Constantina; Wilson, Ian A.; Godzik, Adam; Wooley, John C. (BMC Bioinform., 2010)

A Primer on Metagenomics. - Wooley, John C.; Godzik, Adam; Friedberg, Iddo (PLoS Comput. Biol., 2010)

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families. - Ellrott, Kyle; Jaroszewski, Lukasz; Li, Weizhong; Wooley, John C.; Godzik, Adam (PLoS Comput. Biol., 2010)

Genomic Standards Consortium Workshop: Metagenomics, Metadata and Metaanalysis (M3). - Sterk, Peter; Hirschman, Lynette; Field, Dawn; Wooley, John C. (2010)

Building an OptIPlanet collaboratory to support microbial metagenomics. - Smarr, Larry; Gilna, Paul; Papadopoulos, Philip M.; DeFanti, Thomas A.; Hidley, Gregory R.; Wooley, John C.; Armbrust, E. Virginia; Rohwer, Forest; Frost, Eric G. (Future Gener. Comput. Syst., 2009)

Metagenomics: Facts and Artifacts, and Computational Challenges. - Wooley, John C.; Ye, Yuzhen (J. Comput. Sci. Technol., 2009)

Interdisciplinary Innovation in International Initiatives. - Wooley, John C. (Trans. Comp. Sys. Biology, 2006)

Challenges Faced in the Integration of Biological Information. - Chung, Su Yun; Wooley, John C. (2003)

Computational challenges in structural and functional genomics. - Head-Gordon, Teresa; Wooley, John C. (IBM Syst. J., 2001)

Trends in Computational Biology: A Summary Based on a RECOMB Plenary Lecture, 1999. - Wooley, John C. (J. Comput. Biol., 1999)

Trends in computational biology. - Wooley, John C. (1999)