JBCB, the first decade - John C. Wooley; Ming Li; Limsoon Wong (J. Bioinform. Comput. Biol., 2014)

Ultrafast clustering algorithms for metagenomic sequence analysis - Weizhong Li; Limin Fu; Beifang Niu; Sitao Wu; John C. Wooley (Briefings Bioinform., 2012)

TOPSAN: a dynamic web database for structural genomics - Kyle Ellrott; Christian M. Zmasek; Dana Weekes; S. Sri Krishna; Constantina Bakolitsa; Adam Godzik; John C. Wooley (Nucleic Acids Res., 2011)

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource - Shulei Sun; Jing Chen; Weizhong Li; Ilkay Altintas; Abel W. Lin; Steven Peltier; Karen I. Stocks; Eric E. Allen; Mark H. Ellisman; Jeffrey S. Grethe; John C. Wooley (Nucleic Acids Res., 2011)

TOPSAN: a collaborative annotation environment for structural genomics - Dana Weekes; S. Sri Krishna; Constantina Bakolitsa; Ian A. Wilson; Adam Godzik; John C. Wooley (BMC Bioinform., 2010)

A Primer on Metagenomics - John C. Wooley; Adam Godzik; Iddo Friedberg (PLoS Comput. Biol., 2010)

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families - Kyle Ellrott; Lukasz Jaroszewski; Weizhong Li; John C. Wooley; Adam Godzik (PLoS Comput. Biol., 2010)

Genomic Standards Consortium Workshop: Metagenomics, Metadata and Metaanalysis (M3) - Peter Sterk; Lynette Hirschman; Dawn Field; John C. Wooley (Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010, 2010)

Building an OptIPlanet collaboratory to support microbial metagenomics - Larry Smarr; Paul Gilna; Philip M. Papadopoulos; Thomas A. DeFanti; Gregory R. Hidley; John C. Wooley; E. Virginia Armbrust; Forest Rohwer; Eric G. Frost (Future Gener. Comput. Syst., 2009)

Metagenomics: Facts and Artifacts, and Computational Challenges - John C. Wooley; Yuzhen Ye (J. Comput. Sci. Technol., 2009)

Interdisciplinary Innovation in International Initiatives - John C. Wooley (Trans. Comp. Sys. Biology, 2006)

Challenges Faced in the Integration of Biological Information - Su Yun Chung; John C. Wooley (Bioinformatics, 2003)

Computational challenges in structural and functional genomics - Teresa Head-Gordon; John C. Wooley (IBM Syst. J., 2001)

Trends in Computational Biology: A Summary Based on a RECOMB Plenary Lecture, 1999 - John C. Wooley (J. Comput. Biol., 1999)

Trends in computational biology - John C. Wooley (Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999, 1999)