Chl-a Concentration Inversion Methods for Water Bodies With High TSM Concentrations Based on Waterbody Classification and Deep Learning. - Cui, Jianyong; Cao, Xiaoyi; Du, Chao; Dong, Wen; Liu, Shanwei; Guo, Jie; Xu, Mingming; Yasir, Muhammad (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2025)

Retrieval of Fine-Resolution Aerosol Optical Depth (AOD) in Semiarid Urban Areas Using Landsat Data: A Case Study in Urumqi, NW China. - Chen, Xiangyue; Ding, Jianli; Wang, Jingzhe; Ge, Xiangyu; Raxidin, Mayira; Liang, Jing; Chen, Xiaoxiao; Zhang, Zipeng; Cao, Xiaoyi; Ding, Yue (Remote. Sens., 2020)

EpiAlignment: alignment with both DNA sequence and epigenomic data. - Lu, Jia; Cao, Xiaoyi; Zhong, Sheng (Nucleic Acids Res., 2019)

A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome. - Lu, Jia; Cao, Xiaoyi; Zhong, Sheng (PLoS Comput. Biol., 2018)

GeNemo: a search engine for web-based functional genomic data. - Zhang, Yongqing; Cao, Xiaoyi; Zhong, Sheng (Nucleic Acids Res., 2016)

Enabling interspecies epigenomic comparison with CEpBrowser. - Cao, Xiaoyi; Zhong, Sheng (Bioinform., 2013)

Understanding Variation in Transcription Factor Binding by Modeling Transcription Factor Genome-Epigenome Interactions. - Chen, Chieh-Chun; Xiao, Shu; Xie, Dan; Cao, Xiaoyi; Song, Chun-Xiao; Wang, Ting; He, Chuan; Zhong, Sheng (PLoS Comput. Biol., 2013)

Mapping personal functional data to personal genomes. - Rivas-Astroza, Marcelo; Xie, Dan; Cao, Xiaoyi; Zhong, Sheng (Bioinform., 2011)

Towards an Evolutionary Model of Transcription Networks. - Xie, Dan; Chen, Chieh-Chun; He, Xin; Cao, Xiaoyi; Zhong, Sheng (PLoS Comput. Biol., 2011)

Network-based comparison of temporal gene expression patterns. - Huang, Wei; Cao, Xiaoyi; Zhong, Sheng (Bioinform., 2010)

Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells. - Hong, Feng; Fang, Fang; He, Xuming; Cao, Xiaoyi; Chipperfield, Hiram; Xie, Dan; Wong, Wing Hung; Ng, Huck H.; Zhong, Sheng (PLoS Comput. Biol., 2009)