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ORCIDMatthew E. Ritchie
Person information
- affiliation: University of Melbourne, Australia
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2020 – today
- 2024
[j19]Oliver Cheng
, Min Hao Ling, Changqing Wang, Shuyi Wu, Matthew E. Ritchie, Jonathan Göke, Noorul Amin, Nadia M. Davidson:
Flexiplex: a versatile demultiplexer and search tool for omics data. Bioinform. 40(3) (2024)- 2021
- [j18]Shian Su, Quentin Gouil, Marnie E. Blewitt, Dianne Cook, Peter F. Hickey, Matthew E. Ritchie:
NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j17]Shian Su, Luyi Tian, Xueyi Dong, Peter F. Hickey, Saskia Freytag, Matthew E. Ritchie:
CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods. Bioinform. 36(7): 2288-2290 (2020)
2010 – 2019
- 2019
- [i2]Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis:
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem. F1000Research 8: 752 (2019) - 2018
- [j16]Luyi Tian, Shian Su, Xueyi Dong, Daniela Amann-Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie:
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data. PLoS Comput. Biol. 14(8) (2018) - 2017
- [j15]Monther Alhamdoosh, Milica Ng, Nicholas J. Wilson, Julie M. Sheridan, Huy Huynh, Michael J. Wilson, Matthew E. Ritchie:
Combining multiple tools outperforms individual methods in gene set enrichment analyses. Bioinform. 33(3): 414-424 (2017) - [j14]Shian Su, Charity W. Law, Casey Ah-Cann, Marie-Liesse Asselin-Labat, Marnie E. Blewitt, Matthew E. Ritchie:
Glimma: interactive graphics for gene expression analysis. Bioinform. 33(13): 2050-2052 (2017) - 2014
- [j13]Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie:
KRLMM: an adaptive genotype calling method for common and low frequency variants. BMC Bioinform. 15: 158 (2014) - 2013
- [i1]Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen:
illuminaio: An open source IDAT parsing tool for Illumina microarrays. F1000Research 2: 264 (2013) - 2012
- [j12]Ruijie Liu, Ana-Teresa Maia, Roslin Russell, Carlos Caldas, Bruce A. Ponder, Matthew E. Ritchie:
Allele-specific expression analysis methods for high-density SNP microarray data. Bioinform. 28(8): 1102-1108 (2012) - 2011
- [j11]Matthew E. Ritchie, Ruijie Liu, Benilton S. Carvalho, Rafael A. Irizarry:
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips. BMC Bioinform. 12: 68 (2011) - [j10]Matthew E. Ritchie, Mark J. Dunning, Mike L. Smith, Wei Shi, Andy G. Lynch:
BeadArray Expression Analysis Using Bioconductor. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j9]Matthew E. Ritchie, Matthew S. Forrest, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré:
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. BMC Bioinform. 11: 280 (2010)
2000 – 2009
- 2009
- [j8]Nava Whiteford, Tom Skelly, Christina Curtis, Matthew E. Ritchie, Andrea Löhr, Alexander Wait Zaranek, Irina I. Abnizova, Clive Brown:
Swift: primary data analysis for the Illumina Solexa sequencing platform. Bioinform. 25(17): 2194-2199 (2009) - [j7]Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry:
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinform. 25(19): 2621-2623 (2009) - [j6]Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth:
Illumina WG-6 BeadChip strips should be normalized separately. BMC Bioinform. 10: 372 (2009) - 2008
- [j5]Jonathan M. Cairns, Mark J. Dunning, Matthew E. Ritchie, Roslin Russell, Andy G. Lynch:
BASH: a tool for managing BeadArray spatial artefacts. Bioinform. 24(24): 2921-2922 (2008) - [j4]Mark J. Dunning, Nuno L. Barbosa-Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie:
Statistical issues in the analysis of Illumina data. BMC Bioinform. 9 (2008) - 2007
- [j3]Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré:
beadarray: R classes and methods for Illumina bead-based data. Bioinform. 23(16): 2183-2184 (2007) - [j2]Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth:
A comparison of background correction methods for two-colour microarrays. Bioinform. 23(20): 2700-2707 (2007) - 2006
- [j1]Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth:
Empirical array quality weights in the analysis of microarray data. BMC Bioinform. 7: 261 (2006)
Coauthor Index
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