A deep learning-based comparative MRI model to detect inflammatory changes in rheumatoid arthritis. - Hassanzadeh, Tahereh; Shamonin, Denis P.; Li, Yanli; Krijbolder, Doortje I.; Reijnierse, Monique; Mil, Annette H. M. van der Helm-van; Stoel, Berend C. (Biomed. Signal Process. Control., 2024)

Using 3D point cloud and graph-based neural networks to improve the estimation of pulmonary function tests from chest CT. - Jia, Jingnan; Yu, Bo; Mody, Prerak; Ninaber, Maarten K.; Schouffoer, Anne A.; Vries-Bouwstra, Jeska K. De; Kroft, Lucia J. M.; Staring, Marius; Stoel, Berend C. (Comput. Biol. Medicine, 2024)

Seg-metrics: a Python package to compute segmentation metrics. - Jia, Jingnan; Staring, Marius; Stoel, Berend C. (CoRR, 2024)

Integrated feature analysis for deep learning interpretation and class activation maps. - Li, Yanli; Hassanzadeh, Tahereh; Shamonin, Denis P.; Reijnierse, Monique; Mil, Annette H. M. van der Helm-van; Stoel, Berend C. (CoRR, 2024)

Automatic Pulmonary Function Estimation From Chest CT Scans Using Deep Regression Neural Networks: The Relation Between Structure and Function in Systemic Sclerosis. - Jia, Jingnan; Marges, Emiel R.; Vries-Bouwstra, Jeska K. De; Ninaber, Maarten K.; Kroft, Lucia J. M.; Schouffoer, Anne A.; Staring, Marius; Stoel, Berend C. (IEEE Access, 2023)

Prediction of lung CT scores of systemic sclerosis by cascaded regression neural networks. - Jia, Jingnan; Staring, Marius; Hernández-Girón, Irene; Kroft, Lucia J. M.; Schouffoer, Anne A.; Stoel, Berend C. (2022)

Multi-Task Semi-Supervised Learning For Pulmonary Lobe Segmentation. - Jia, Jingnan; Zhai, Zhiwei; Bakker, M. Els; Hernández-Girón, Irene; Staring, Marius; Stoel, Berend C. (2021)

Optimization of hepatic vasculature segmentation from contrast-enhanced MRI, exploring two 3D Unet modifications and various loss functions. - Ivashchenko, Oleksandra V.; Zhai, Zhiwei; Stoel, Berend C.; Ruers, Theodoor Jacques Marie (2021)

Multi-task Semi-supervised Learning for Pulmonary Lobe Segmentation. - Jia, Jingnan; Zhai, Zhiwei; Bakker, M. Els; Hernández-Girón, Irene; Staring, Marius; Stoel, Berend C. (CoRR, 2021)

Prediction of Lung CT Scores of Systemic Sclerosis by Cascaded Regression Neural Networks. - Jia, Jingnan; Staring, Marius; Hernández-Girón, Irene; Kroft, Lucia J. M.; Schouffoer, Anne A.; Stoel, Berend C. (CoRR, 2021)

A framework for pulmonary fissure segmentation in 3D CT images using a directional derivative of plate filter. - Zhao, Hong; Stoel, Berend C.; Staring, Marius; Bakker, M. Els; Stolk, Jan; Zhou, Ping; Xiao, Changyan (Signal Process., 2020)

Registration of vascular structures using a hybrid mixture model. - Bayer, Siming; Zhai, Zhiwei; Strumia, Maddalena; Tong, Xiaoguang; Gao, Ying; Staring, Marius; Stoel, Berend C.; Fahrig, Rebecca; Nabavi, Arya; Maier, Andreas; Ravikumar, Nishant (Int. J. Comput. Assist. Radiol. Surg., 2019)

Linking Convolutional Neural Networks with Graph Convolutional Networks: Application in Pulmonary Artery-Vein Separation. - Zhai, Zhiwei; Staring, Marius; Zhou, Xuhui; Xie, Qiuxia; Xiao, Xiaojuan; Bakker, M. Els; Kroft, Lucia J. M.; Lelieveldt, Boudewijn P. F.; Boon, Gudula J. A. M.; Klok, Frederikus A.; Stoel, Berend C. (2019)

Pulmonary Vessel Tree Matching for Quantifying Changes in Vascular Morphology. - Zhai, Zhiwei; Staring, Marius; Ota, Hideki; Stoel, Berend C. (2018)

A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection. - Malan, Daniel F.; Walt, Stefan Johann van der; Raidou, Renata G.; Berg, Bas van den; Stoel, Berend C.; Botha, Charl P.; Nelissen, Rob G. H. H.; Valstar, Edward R. (Int. J. Comput. Assist. Radiol. Surg., 2016)

Pulmonary Fissure Detection in CT Images Using a Derivative of Stick Filter. - Xiao, Changyan; Stoel, Berend C.; Bakker, M. Els; Peng, Yuanyuan; Stolk, Jan; Staring, Marius (IEEE Trans. Medical Imaging, 2016)

Lung vessel segmentation in CT images using graph cuts. - Zhai, Zhiwei; Staring, Marius; Stoel, Berend C. (2016)

Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study. - Rudyanto, Rina Dewi; Kerkstra, Sjoerd; Rikxoort, Eva M. van; Fetita, Catalin I.; Brillet, Pierre-Yves; Lefevre, Christophe; Xue, Wenzhe; Zhu, Xiangjun; Liang, Jianming; Öksüz, Ilkay; Ünay, Devrim; Kadipasaoglu, Kamuran; et al. (Medical Image Anal., 2014)

Multiscale Bi-Gaussian Filter for Adjacent Curvilinear Structures Detection With Application to Vasculature Images. - Xiao, Changyan; Staring, Marius; Wang, Yaonan; Shamonin, Denis P.; Stoel, Berend C. (IEEE Trans. Image Process., 2013)

A derivative of stick filter for pulmonary fissure detection in CT images. - Xiao, Changyan; Staring, Marius; Wang, Juan; Shamonin, Denis P.; Stoel, Berend C. (2013)

Automatic lung lobe segmentation of COPD patients using iterative B-spline fitting. - Shamonin, Denis P.; Staring, Marius; Bakker, M. Els; Xiao, Changyan; Stolk, Jan; Reiber, Johan H. C.; Stoel, Berend C. (2012)

Local SIMPLE multi atlas-based segmentation applied to lung lobe detection on chest CT. - Agarwal, Maruti; Hendriks, Emile A.; Stoel, Berend C.; Bakker, M. Els; Reiber, Johan H. C.; Staring, Marius (2012)

A strain energy filter for 3D vessel enhancement with application to pulmonary CT images. - Xiao, Changyan; Staring, Marius; Shamonin, Denis P.; Reiber, Johan H. C.; Stolk, Jan; Stoel, Berend C. (Medical Image Anal., 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Murphy, Keelin; Ginneken, Bram van; Reinhardt, Joseph M.; Kabus, Sven; Ding, Kai; Deng, Xiang; Cao, Kunlin; Du, Kaifang; Christensen, Gary E.; Garcia, Vincent; Vercauteren, Tom; Ayache, Nicholas; et al. (IEEE Trans. Medical Imaging, 2011)

A Strain Energy Filter for 3D Vessel Enhancement. - Xiao, Changyan; Staring, Marius; Shamonin, Denis P.; Reiber, Johan H. C.; Stolk, Jan; Stoel, Berend C. (2010)

Towards local estimation of emphysema progression using image registration. - Staring, Marius; Bakker, M. Els; Shamonin, Denis P.; Stolk, Jan; Reiber, Johan H. C.; Stoel, Berend C. (2009)

Labeling the pulmonary arterial tree in CT images for automatic quantification of pulmonary embolism. - Peters, Ralph J. M.; Marquering, Henk A.; Dogan, Halil; Hendriks, Emile A.; Roos, Albert de; Reiber, Johan H. C.; Stoel, Berend C. (2007)