A deep learning-based comparative MRI model to detect inflammatory changes in rheumatoid arthritis - Tahereh Hassanzadeh; Denis P. Shamonin; Yanli Li; Doortje I. Krijbolder; Monique Reijnierse; Annette H. M. van der Helm-van Mil; Berend C. Stoel (Biomed. Signal Process. Control., 2024)

Using 3D point cloud and graph-based neural networks to improve the estimation of pulmonary function tests from chest CT - Jingnan Jia; Bo Yu; Prerak Mody; Maarten K. Ninaber; Anne A. Schouffoer; Jeska K. De Vries-Bouwstra; Lucia J. M. Kroft; Marius Staring; Berend C. Stoel (Comput. Biol. Medicine, 2024)

Seg-metrics: a Python package to compute segmentation metrics - Jingnan Jia; Marius Staring; Berend C. Stoel (CoRR, 2024)

Integrated feature analysis for deep learning interpretation and class activation maps - Yanli Li; Tahereh Hassanzadeh; Denis P. Shamonin; Monique Reijnierse; Annette H. M. van der Helm-van Mil; Berend C. Stoel (CoRR, 2024)

Automatic Pulmonary Function Estimation From Chest CT Scans Using Deep Regression Neural Networks: The Relation Between Structure and Function in Systemic Sclerosis - Jingnan Jia; Emiel R. Marges; Jeska K. De Vries-Bouwstra; Maarten K. Ninaber; Lucia J. M. Kroft; Anne A. Schouffoer; Marius Staring; Berend C. Stoel (IEEE Access, 2023)

Prediction of lung CT scores of systemic sclerosis by cascaded regression neural networks - Jingnan Jia; Marius Staring; Irene Hernández-Girón; Lucia J. M. Kroft; Anne A. Schouffoer; Berend C. Stoel (Medical Imaging 2022: Computer-Aided Diagnosis, San Diego, CA, USA, February 20-24, 2022 / online, March 21-27, 2022, 2022)

Multi-Task Semi-Supervised Learning For Pulmonary Lobe Segmentation - Jingnan Jia; Zhiwei Zhai; M. Els Bakker; Irene Hernández-Girón; Marius Staring; Berend C. Stoel (18th IEEE International Symposium on Biomedical Imaging, ISBI 2021, Nice, France, April 13-16, 2021, 2021)

Optimization of hepatic vasculature segmentation from contrast-enhanced MRI, exploring two 3D Unet modifications and various loss functions - Oleksandra V. Ivashchenko; Zhiwei Zhai; Berend C. Stoel; Theodoor Jacques Marie Ruers (Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, Online, February 15-20, 2021, 2021)

Multi-task Semi-supervised Learning for Pulmonary Lobe Segmentation - Jingnan Jia; Zhiwei Zhai; M. Els Bakker; Irene Hernández-Girón; Marius Staring; Berend C. Stoel (CoRR, 2021)

Prediction of Lung CT Scores of Systemic Sclerosis by Cascaded Regression Neural Networks - Jingnan Jia; Marius Staring; Irene Hernández-Girón; Lucia J. M. Kroft; Anne A. Schouffoer; Berend C. Stoel (CoRR, 2021)

A framework for pulmonary fissure segmentation in 3D CT images using a directional derivative of plate filter - Hong Zhao; Berend C. Stoel; Marius Staring; M. Els Bakker; Jan Stolk; Ping Zhou; Changyan Xiao (Signal Process., 2020)

Registration of vascular structures using a hybrid mixture model - Siming Bayer; Zhiwei Zhai; Maddalena Strumia; Xiaoguang Tong; Ying Gao; Marius Staring; Berend C. Stoel; Rebecca Fahrig; Arya Nabavi; Andreas Maier; Nishant Ravikumar (Int. J. Comput. Assist. Radiol. Surg., 2019)

Linking Convolutional Neural Networks with Graph Convolutional Networks: Application in Pulmonary Artery-Vein Separation - Zhiwei Zhai; Marius Staring; Xuhui Zhou; Qiuxia Xie; Xiaojuan Xiao; M. Els Bakker; Lucia J. M. Kroft; Boudewijn P. F. Lelieveldt; Gudula J. A. M. Boon; Frederikus A. Klok; Berend C. Stoel (Graph Learning in Medical Imaging - First International Workshop, GLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 17, 2019, Proceedings, 2019)

Pulmonary Vessel Tree Matching for Quantifying Changes in Vascular Morphology - Zhiwei Zhai; Marius Staring; Hideki Ota; Berend C. Stoel (Medical Image Computing and Computer Assisted Intervention - MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part II, 2018)

A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection - Daniel F. Malan; Stefan Johann van der Walt; Renata G. Raidou; Bas van den Berg; Berend C. Stoel; Charl P. Botha; Rob G. H. H. Nelissen; Edward R. Valstar (Int. J. Comput. Assist. Radiol. Surg., 2016)

Pulmonary Fissure Detection in CT Images Using a Derivative of Stick Filter - Changyan Xiao; Berend C. Stoel; M. Els Bakker; Yuanyuan Peng; Jan Stolk; Marius Staring (IEEE Trans. Medical Imaging, 2016)

Lung vessel segmentation in CT images using graph cuts - Zhiwei Zhai; Marius Staring; Berend C. Stoel (Medical Imaging 2016: Image Processing, San Diego, California, USA, February 27, 2016, 2016)

Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study - Rina Dewi Rudyanto; Sjoerd Kerkstra; Eva M. van Rikxoort; Catalin I. Fetita; Pierre-Yves Brillet; Christophe Lefevre; Wenzhe Xue; Xiangjun Zhu; Jianming Liang; Ilkay Öksüz; Devrim Ünay; Kamuran Kadipasaoglu; et al. (Medical Image Anal., 2014)

Multiscale Bi-Gaussian Filter for Adjacent Curvilinear Structures Detection With Application to Vasculature Images - Changyan Xiao; Marius Staring; Yaonan Wang; Denis P. Shamonin; Berend C. Stoel (IEEE Trans. Image Process., 2013)

A derivative of stick filter for pulmonary fissure detection in CT images - Changyan Xiao; Marius Staring; Juan Wang; Denis P. Shamonin; Berend C. Stoel (Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando Area), Florida, USA, February 10-12, 2013, 2013)

Automatic lung lobe segmentation of COPD patients using iterative B-spline fitting - Denis P. Shamonin; Marius Staring; M. Els Bakker; Changyan Xiao; Jan Stolk; Johan H. C. Reiber; Berend C. Stoel (Medical Imaging 2012: Image Processing, San Diego, California, USA, February 4, 2012, 2012)

Local SIMPLE multi atlas-based segmentation applied to lung lobe detection on chest CT - Maruti Agarwal; Emile A. Hendriks; Berend C. Stoel; M. Els Bakker; Johan H. C. Reiber; Marius Staring (Medical Imaging 2012: Image Processing, San Diego, California, USA, February 4, 2012, 2012)

A strain energy filter for 3D vessel enhancement with application to pulmonary CT images - Changyan Xiao; Marius Staring; Denis P. Shamonin; Johan H. C. Reiber; Jan Stolk; Berend C. Stoel (Medical Image Anal., 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

A Strain Energy Filter for 3D Vessel Enhancement - Changyan Xiao; Marius Staring; Denis P. Shamonin; Johan H. C. Reiber; Jan Stolk; Berend C. Stoel (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part III, 2010)

Towards local estimation of emphysema progression using image registration - Marius Staring; M. Els Bakker; Denis P. Shamonin; Jan Stolk; Johan H. C. Reiber; Berend C. Stoel (Medical Imaging 2009: Image Processing, Lake Buena Vista (Orlando Area), Florida, United States, 7-12 February 2009, 2009)

Labeling the pulmonary arterial tree in CT images for automatic quantification of pulmonary embolism - Ralph J. M. Peters; Henk A. Marquering; Halil Dogan; Emile A. Hendriks; Albert de Roos; Johan H. C. Reiber; Berend C. Stoel (Medical Imaging 2007: Computer-Aided Diagnosis, San Diego, CA, United States, 17-22 February 2007, 2007)