Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. - Caldas, José; Gehlenborg, Nils; Kettunen, Eeva; Faisal, Ali; Rönty, Mikko; Nicholson, Andrew G.; Knuutila, Sakari; Brazma, Alvis; Kaski, Samuel (Bioinform., 2012)

CGHpower: exploring sample size calculations for chromosomal copy number experiments. - Scheinin, Ilari; Ferreira, Jose A.; Knuutila, Sakari; Meijer, Gerrit; Wiel, Mark A. van de; Ylstra, Bauke (BMC Bioinform., 2010)

CanGEM: mining gene copy number changes in cancer. - Scheinin, Ilari; Myllykangas, Samuel; Borze, Ioana; Böhling, Tom; Knuutila, Sakari; Saharinen, Juha (Nucleic Acids Res., 2008)