Special issue on big data computing service and machine learning applications - Katerina Potika; Magdalini Eirinaki; Monica Vitali; Anna Bernasconi; Hiroyuki Fujioka (Future Gener. Comput. Syst., 2025)

An LLM-assisted ETL pipeline to build a high-quality knowledge graph of the Italian legislation - Andrea Colombo; Anna Bernasconi; Stefano Ceri (Inf. Process. Manag., 2025)

Capturing research literature attitude towards sustainable development goals: an LLM-based topic modeling approach - Francesco Invernici; Francesca Curati; Jelena Jakimov; Amirhossein Samavi; Anna Bernasconi (J. Big Data, 2025)

Mine Graph Rule: A New GQL Operator for Mining Association Rules in Property Graph Databases - Francesco Cambria; Francesco Invernici; Anna Bernasconi; Stefano Ceri (VLDB J., 2025)

Leveraging Profiling to Bridge Healthcare Silos for Federated Analyses - Nelly Barret; Anna Bernasconi; Cinzia Cappiello; Giacomo Palu; Pietro Pinoli (Intelligent Information Systems - CAiSE 2025 Forum and Doctoral Consortium, Vienna, Austria, June 16-20, 2025, Proceedings, 2025)

TETYS: Configurable Topic Modeling Exploration for Big Corpora of Text Documents - Francesco Invernici; Anna Bernasconi; Francesca Curati; Jelena Jakimov; Amirhossein Samavi (Proceedings 28th International Conference on Extending Database Technology, EDBT 2025, Barcelona, Spain, March 25-28, 2025, 2025)

Advances in Conceptual Modeling - ER 2024 Workshops, AISA, CMLS, EmpER, QUAMES, JUSMOD, LLM4Modeling, Pittsburgh, PA, USA, October 28-31, 2024, Proceedings - Motoshi Saeki; Leah Wong; João Araújo; Clara Ayora; Anna Bernasconi; Matteo Buffa; Silvana Castano; Peter Fettke; Hans-Georg Fill; Alberto García S.; Miguel Goulão; Cristine Griffo; et al. (Springer, 2025)

Supporting data and code for "Multi-scale early spillover warnings for influenza A viruses" (Version 1) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2025)
Accessed on YYYY-MM-DD.

Supporting data and code for "Multi-scale early spillover warnings for influenza A viruses" (Version 2) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2025)
Accessed on YYYY-MM-DD.

VarClaMM: A reference meta-model to understand DNA variant classification - Mireia Costa; Alberto García S.; Ana León; Anna Bernasconi; Oscar Pastor (Data Knowl. Eng., 2024)

Exploring the evolution of research topics during the COVID-19 pandemic - Francesco Invernici; Anna Bernasconi; Stefano Ceri (Expert Syst. Appl., 2024)

SENSIBLE: Implementing Data-Driven Early Warning Systems for Future Viral Epidemics - Anna Bernasconi; Matteo Chiara; Tommaso Alfonsi; Stefano Ceri (Proceedings of the Research Projects Exhibition Papers Presented at the 36th International Conference on Advanced Information Systems Engineering(CAiSE 2024), Limassol, Cyprus, June 3-7, 2024, 2024)

TETYS: Towards the Next-Generation Open-Source Web Topic Explorer - Anna Bernasconi; Francesco Invernici; Stefano Ceri (Proceedings of the Research Projects Exhibition Papers Presented at the 36th International Conference on Advanced Information Systems Engineering(CAiSE 2024), Limassol, Cyprus, June 3-7, 2024, 2024)

Towards an Explorable Conceptual Map of Large Language Models - Lorenzo Bertetto; Francesca Bettinelli; Alessio Buda; Marco Da Mommio; Simone Di Bari; Claudio Savelli; Elena Baralis; Anna Bernasconi; Luca Cagliero; Stefano Ceri; Francesco Pierri (Intelligent Information Systems - CAiSE Forum 2024, Limassol, Cyprus, June 3-7, 2024, Proceedings, 2024)

A Conceptual Approach to using Relevant Patterns in Genomic Data Analysis - Mireia Costa; Alberto García S.; Anna Bernasconi; Stefano Ceri; Oscar Pastor (Companion Proceedings of the 43rd International Conference on Conceptual Modeling: ER Forum, Special Topics, Posters and Demos Co-located with ER 2024, Pittsburgh, Pennsylvania, USA, October 28-31, 2024, 2024)

Reactive Knowledge Management - Stefano Ceri; Anna Bernasconi; Alessia Gagliardi (40th IEEE International Conference on Data Engineering, ICDE 2024, Utrecht, The Netherlands, May 13-16, 2024, 2024)

Towards a Standard for Triggers in Property Graphs - Luigi Bellomarini; Anna Bernasconi; Stefano Ceri; Alessia Gagliardi; Davide Magnanimi; Davide Martinenghi (Proceedings of the 32nd Symposium of Advanced Database Systems, Villasimius, Italy, June 23rd to 26th, 2024, 2024)

PG-Triggers: Triggers for Property Graphs - Stefano Ceri; Anna Bernasconi; Alessia Gagliardi; Davide Martinenghi; Luigi Bellomarini; Davide Magnanimi (Companion of the 2024 International Conference on Management of Data, SIGMOD/PODS 2024, Santiago, Chile, June 9-15, 2024, 2024)

Achieving data FAIRification in a distributed analytics research platform for rare diseases - Anna Bernasconi; Cinzia Cappiello; Stefano Ceri; Pietro Pinoli (15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2024, Leiden, The Netherlands, February 20th to 26th, 2024, 2024)

Supporting data and code for "Data-driven recombination detection in viral genomes" (Version 3.3.3-v3) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2024)
Accessed on YYYY-MM-DD.

Supporting data and code for "Data-driven recombination detection in viral genomes" (Version 4) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2024)
Accessed on YYYY-MM-DD.

Italian Legislative Property Graph (Version 1) - Andrea Colombo; Anna Bernasconi; Stefano Ceri (Zenodo, 2024)
Accessed on YYYY-MM-DD.

Supporting data and code for "Data-driven recombination detection in viral genomes" (Version 7.0.0) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2024)
Accessed on YYYY-MM-DD.

Modelling Legislative Systems into Property Graphs to Enable Advanced Pattern Detection - Andrea Colombo; Anna Bernasconi; Stefano Ceri (CoRR, 2024)

MINE GRAPH RULE: A New Cypher-like Operator for Mining Association Rules on Property Graphs - Francesco Cambria; Francesco Invernici; Anna Bernasconi; Stefano Ceri (CoRR, 2024)

Capturing research literature attitude towards Sustainable Development Goals: an LLM-based topic modeling approach - Francesco Invernici; Francesca Curati; Jelena Jakimov; Amirhossein Samavi; Anna Bernasconi (CoRR, 2024)

Model, Integrate, Search... Repeat - A Sound Approach to Building Integrated Repositories of Genomic Data - Anna Bernasconi (Springer, 2023)

VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants - Pietro Pinoli; Arif Canakoglu; Stefano Ceri; Matteo Chiara; Erika Ferrandi; Luca Minotti; Anna Bernasconi (Database J. Biol. Databases Curation, 2023)

PoliViews: A comprehensive and modular approach to the conceptual modeling of genomic data - Anna Bernasconi; Alberto García S.; Stefano Ceri; Oscar Pastor (Data Knowl. Eng., 2023)

Editorial: Identification of phenotypically important genomic variants - Elizabeth A. Heron; Giorgio Valle; Anna Bernasconi (Frontiers Bioinform., 2023)

Assessing the value of ontologically unpacking a conceptual model for human genomics - Alberto García S.; Anna Bernasconi; Giancarlo Guizzardi; Oscar Pastor; Veda C. Storey; José Ignacio Panach (Inf. Syst., 2023)

Ontological Representation of FAIR Principles: A Blueprint for FAIRer Data Sources - Anna Bernasconi; Alberto García Simón; Giancarlo Guizzardi; Luiz Olavo Bonino da Silva Santos; Veda C. Storey (Advanced Information Systems Engineering - 35th International Conference, CAiSE 2023, Zaragoza, Spain, June 12-16, 2023, Proceedings, 2023)

A Reference Meta-model to Understand DNA Variant Interpretation Guidelines - Mireia Costa; Alberto García S.; Ana León; Anna Bernasconi; Oscar Pastor (Conceptual Modeling - 42nd International Conference, ER 2023, Lisbon, Portugal, November 6-9, 2023, Proceedings, 2023)

OntoEffect: An OntoUML-Based Ontology to Explain SARS-CoV-2 Variants' Effects - Ruba Al Khalaf; Anna Bernasconi; Alberto García S. (Proceedings of the 15th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, IC3K 2023, Volume 2: KEOD, Rome, Italy, November 13-15, 2023, 2023)

The Opportunity of Data-Driven Services for Viral Genomic Surveillance - Anna Bernasconi (IEEE International Conference on Service-Oriented System Engineering, SOSE 2023, Athens, Greece, July 17-20, 2023, 2023)

Current Trends in Web Engineering - ICWE 2022 International Workshops, BECS, SWEET and WALS, Bari, Italy, July 5-8, 2022, Revised Selected Papers - Giuseppe Agapito; Anna Bernasconi; Cinzia Cappiello; Hasan Ali Khattak; In-Young Ko; Giuseppe Loseto; Michael Mrissa; Luca Nanni; Pietro Pinoli; Azzurra Ragone; Michele Ruta; Floriano Scioscia; et al. (Springer, 2023)

Supporting data and code for "Data-driven recombination detection in viral genomes" (Version 3.3.3) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2023)
Accessed on YYYY-MM-DD.

Supporting data and code for "Data-driven recombination detection in viral genomes" (Version 3.3.3-v2) - Tommaso Alfonsi; Anna Bernasconi; Matteo Chiara; Stefano Ceri (Zenodo, 2023)
Accessed on YYYY-MM-DD.

Supporting data for "CoVEffect: Interactive System for Mining the Effects of SARS-CoV-2 Mutations and Variants Based on Deep Learning" (Version 1) - Giuseppe Serna Garcia; Ruba Al Khalaf; Francesco Invernici; Anna Bernasconi; Stefano Ceri (Zenodo, 2023)
Accessed on YYYY-MM-DD.

PG-Triggers: Triggers for Property Graphs - Alessia Gagliardi; Anna Bernasconi; Davide Martinenghi; Stefano Ceri (CoRR, 2023)

Exploring the evolution of research topics during the COVID-19 pandemic - Francesco Invernici; Anna Bernasconi; Stefano Ceri (CoRR, 2023)

Searching COVID-19 clinical research using graphical abstracts - Francesco Invernici; Anna Bernasconi; Stefano Ceri (CoRR, 2023)

GeMI: interactive interface for transformer-based Genomic Metadata Integration - Giuseppe Serna Garcia; Michele Leone; Anna Bernasconi; Mark J. Carman (Database J. Biol. Databases Curation, 2022)

ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time - Luca Cilibrasi; Pietro Pinoli; Anna Bernasconi; Arif Canakoglu; Matteo Chiara; Stefano Ceri (Bioinform., 2022)

Genomic data integration and user-defined sample-set extraction for population variant analysis - Tommaso Alfonsi; Anna Bernasconi; Arif Canakoglu; Marco Masseroli (BMC Bioinform., 2022)

Semantic interoperability: ontological unpacking of a viral conceptual model - Anna Bernasconi; Giancarlo Guizzardi; Oscar Pastor; Veda C. Storey (BMC Bioinform., 2022)

GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis - Pietro Crovari; Sara Pidò; Pietro Pinoli; Anna Bernasconi; Arif Canakoglu; Franca Garzotto; Stefano Ceri (ACM Trans. Comput. Heal., 2022)

META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration - Anna Bernasconi; Arif Canakoglu; Marco Masseroli; Stefano Ceri (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

An Ontological Characterization of a Conceptual Model of the Human Genome - Alberto García S.; Giancarlo Guizzardi; Oscar Pastor; Veda C. Storey; Anna Bernasconi (Intelligent Information Systems - CAiSE Forum 2022, Leuven, Belgium, June 6-10, 2022, Proceedings, 2022)

Conceptual models and databases for searching the genome - Anna Bernasconi; Pietro Pinoli (Proceedings of the 25th International Conference on Extending Database Technology, EDBT 2022, Edinburgh, UK, March 29 - April 1, 2022, 2022)

An Initial Empirical Assessment of an Ontological Model of the Human Genome - Alberto García S.; Anna Bernasconi; Giancarlo Guizzardi; Oscar Pastor; Veda C. Storey; Mireia Costa (Advances in Conceptual Modeling - ER 2022 Workshops, CMLS, EmpER, and JUSMOD, Hyderabad, India, October 17-20, 2022, Proceedings, 2022)

A Comprehensive Approach for the Conceptual Modeling of Genomic Data - Anna Bernasconi; Alberto García S.; Stefano Ceri; Oscar Pastor (Conceptual Modeling - 41st International Conference, ER 2022, Hyderabad, India, October 17-20, 2022, Proceedings, 2022)

A Sound and Repeatable Approach to Building Integrated Repositories of Genomic Data - Anna Bernasconi (Proceedings of the 1st Italian Conference on Big Data and Data Science (itaDATA 2022), Milan, Italy, September 20-21, 2022, 2022)

Expressing Biological Problems with Logical Reasoning Languages - Tommaso Alfonsi; Luigi Bellomarini; Anna Bernasconi; Stefano Ceri (Proceedings of the 16th International Rule Challenge and 6th Doctoral Consortium @ RuleML+RR 2022 co-located with 18th Reasoning Web Summer School (RW 2022) and 14th DecisionCAMP 2022 as part of Declarative AI 2022, Berlin, Germany (virtual due to Covid-19 pandemic), 26 - 28 September, 2022, 2022)

Computational Intelligence Methods for Bioinformatics and Biostatistics - 17th International Meeting, CIBB 2021, Virtual Event, November 15-17, 2021, Revised Selected Papers - Davide Chicco; Angelo M. Facchiano; Erica Tavazzi; Enrico Longato; Martina Vettoretti; Anna Bernasconi; Simone Avesani; Paolo Cazzaniga (Springer, 2022)

Model, integrate, search... repeat: a sound approach to building integrated repositories of genomic data - Anna Bernasconi (Polytechnic University of Milan, Italy, 2021)

The road towards data integration in human genomics: players, steps and interactions - Anna Bernasconi; Arif Canakoglu; Marco Masseroli; Stefano Ceri (Briefings Bioinform., 2021)

A review on viral data sources and search systems for perspective mitigation of COVID-19 - Anna Bernasconi; Arif Canakoglu; Marco Masseroli; Pietro Pinoli; Stefano Ceri (Briefings Bioinform., 2021)

EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species - Anna Bernasconi; Luca Cilibrasi; Ruba Al Khalaf; Tommaso Alfonsi; Stefano Ceri; Pietro Pinoli; Arif Canakoglu (Database J. Biol. Databases Curation, 2021)

TOrPEDO: witnessing model correctness with topological proofs - Claudio Menghi; Alessandro Maria Rizzi; Anna Bernasconi; Paola Spoletini (Formal Aspects Comput., 2021)

A Conceptual Model for Geo-Online Exploratory Data Visualization: The Case of the COVID-19 Pandemic - Anna Bernasconi; Silvia Grandi (Inf., 2021)

ViruSurf: an integrated database to investigate viral sequences - Arif Canakoglu; Pietro Pinoli; Anna Bernasconi; Tommaso Alfonsi; Damianos P. Melidis; Stefano Ceri (Nucleic Acids Res., 2021)

Ontological Unpacking as Explanation: The Case of the Viral Conceptual Model - Giancarlo Guizzardi; Anna Bernasconi; Oscar Pastor; Veda C. Storey (Conceptual Modeling - 40th International Conference, ER 2021, Virtual Event, October 18-21, 2021, Proceedings, 2021)

CoV2K: A Knowledge Base of SARS-CoV-2 Variant Impacts - Ruba Al Khalaf; Tommaso Alfonsi; Stefano Ceri; Anna Bernasconi (Research Challenges in Information Science - 15th International Conference, RCIS 2021, Limassol, Cyprus, May 11-14, 2021, Proceedings, 2021)

Extreme Requirements Elicitation: Lessons Learnt from the COVID-19 Case Study - Anna Bernasconi (Joint Proceedings of REFSQ 2021 Workshops, OpenRE, Poster and Tools Track, and Doctoral Symposium co-located with the 27th International Conference on Requirements Engineering: Foundation for Software Quality (REFSQ 2021), Essen, Germany, April 12, 2021, 2021)

Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence (Version 2021-06-03-data-download) - Anna Bernasconi; Lorenzo Mari; Renato Casagrandi; Stefano Ceri (Zenodo, 2021)
Accessed on YYYY-MM-DD.

Empowering Virus Sequence Research Through Conceptual Modeling - Anna Bernasconi; Arif Canakoglu; Pietro Pinoli; Stefano Ceri (Conceptual Modeling - 39th International Conference, ER 2020, Vienna, Austria, November 3-6, 2020, Proceedings, 2020)

Integrating Topological Proofs with Model Checking to Instrument Iterative Design - Claudio Menghi; Alessandro Maria Rizzi; Anna Bernasconi (Fundamental Approaches to Software Engineering - 23rd International Conference, FASE 2020, Held as Part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2020, Dublin, Ireland, April 25-30, 2020, Proceedings, 2020)

Automated Integration of Genomic Metadata with Sequence-to-Sequence Models - Giuseppe Cannizzaro; Michele Leone; Anna Bernasconi; Arif Canakoglu; Mark J. Carman (Machine Learning and Knowledge Discovery in Databases. Applied Data Science and Demo Track - European Conference, ECML PKDD 2020, Ghent, Belgium, September 14-18, 2020, Proceedings, Part V, 2020)

OpenGDC (Version 1.0.0) - Fabio Cumbo; Eleonora Cappelli; Anna Bernasconi; Arif Canakoglu; Stefano Ceri; Marco Masseroli; Emanuel Weitschek (Zenodo, 2020)
Accessed on YYYY-MM-DD.

GenoSurf: metadata driven semantic search system for integrated genomic datasets - Arif Canakoglu; Anna Bernasconi; Andrea Colombo; Marco Masseroli; Stefano Ceri (Database J. Biol. Databases Curation, 2019)

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data - Marco Masseroli; Arif Canakoglu; Pietro Pinoli; Abdulrahman Kaitoua; Andrea Gulino; Olha Horlova; Luca Nanni; Anna Bernasconi; Stefano Perna; Eirini Stamoulakatou; Stefano Ceri (Bioinform., 2019)

Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets - Marzia Settino; Anna Bernasconi; Gaia Ceddia; Giuseppe Agapito; Marco Masseroli; Mario Cannataro (Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2019, Niagara Falls, NY, USA, September 7-10, 2019, 2019)

Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study - Anna Bernasconi; Arif Canakoglu; Stefano Ceri (Advances in Conceptual Modeling - ER 2019 Workshops FAIR, MREBA, EmpER, MoBiD, OntoCom, and ER Doctoral Symposium Papers, Salvador, Brazil, November 4-7, 2019, Proceedings, 2019)

From a Conceptual Model to a Knowledge Graph for Genomic Datasets - Anna Bernasconi; Arif Canakoglu; Stefano Ceri (Conceptual Modeling - 38th International Conference, ER 2019, Salvador, Brazil, November 4-7, 2019, Proceedings, 2019)

Biological and Medical Ontologies: Disease Ontology (DO) - Anna Bernasconi; Marco Masseroli (Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019)

Biological and Medical Ontologies: Human Phenotype Ontology (HPO) - Anna Bernasconi; Marco Masseroli (Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019)

Biological and Medical Ontologies: Systems Biology Ontology (SBO) - Anna Bernasconi; Marco Masseroli (Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019)

Using Metadata for Locating Genomic Datasets on a Global Scale - Anna Bernasconi (Proceedings of the CIKM 2018 Workshops co-located with 27th ACM International Conference on Information and Knowledge Management (CIKM 2018), Torino, Italy, October 22, 2018, 2018)

Ontology-driven metadata enrichment for genomic datasets - Anna Bernasconi; Arif Canakoglu; Andrea Colombo; Stefano Ceri (Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2018, Antwerp, Belgium, December 3-6, 2018, 2018)

Integrating Topological Proofs with Model Checking to Instrument Iterative Design - Claudio Menghi; Alessandro Maria Rizzi; Anna Bernasconi (CoRR, 2018)

Conceptual Modeling for Genomics: Building an Integrated Repository of Open Data - Anna Bernasconi; Stefano Ceri; Alessandro Campi; Marco Masseroli (Conceptual Modeling - 36th International Conference, ER 2017, Valencia, Spain, November 6-9, 2017, Proceedings, 2017)

Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome - Stefano Ceri; Anna Bernasconi; Arif Canakoglu; Andrea Gulino; Abdulrahman Kaitoua; Marco Masseroli; Luca Nanni; Pietro Pinoli (Data Analytics and Management in Data Intensive Domains - XIX International Conference, DAMDID/RCDL 2017, Moscow, Russia, October 10-13, 2017, Revised Selected Papers, 2017)

From Model Checking to a Temporal Proof for Partial Models - Anna Bernasconi; Claudio Menghi; Paola Spoletini; Lenore D. Zuck; Carlo Ghezzi (Software Engineering and Formal Methods - 15th International Conference, SEFM 2017, Trento, Italy, September 4-8, 2017, Proceedings, 2017)

From model checking to a temporal proof for partial models: preliminary example - Anna Bernasconi; Claudio Menghi; Paola Spoletini; Lenore D. Zuck; Carlo Ghezzi (CoRR, 2017)