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2020 – today
- 2022
[j24]Manuel Feser
, Patrick König, Anne Fiebig, Daniel Arend, Matthias Lange, Uwe Scholz:
On the way to plant data commons - a genotyping use case. J. Integr. Bioinform. 19(4) (2022)- 2021
- [j23]Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz:
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22(5) (2021) - 2020
- [i2]Dennis Psaroudakis, Feng Liu, Patrick König, Uwe Scholz, Astrid Junker, Matthias Lange, Daniel Arend:
isa4j: a scalable Java library for creating ISA-Tab metadata. F1000Research 9: 1388 (2020)
2010 – 2019
- 2019
- [j22]Gerhard Mayer, Christian Quast, Janine Felden, Matthias Lange, Manuel Prinz, Alfred Pühler, Chris Lawerenz, Uwe Scholz, Frank Oliver Glöckner, Wolfgang Müller, Katrin Marcus, Martin Eisenacher:
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. Briefings Bioinform. 20(4): 1215-1221 (2019) - [j21]Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E. Benites-Alfaro, Clayton L. Birkett, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B. Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David S. LeBauer, David A Lyon, David F. Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul D. Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden, The BrAPI consortium:
BrAPI - an application programming interface for plant breeding applications. Bioinform. 35(20): 4147-4155 (2019) - [j20]Mehmood Ghaffar, Danuta Schüler, Patrick König, Daniel Arend, Astrid Junker, Uwe Scholz, Matthias Lange:
Programmatic Access to FAIRified Digital Plant Genetic Resources. J. Integr. Bioinform. 16(4) (2019) - [i1]Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher:
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8: 1877 (2019) - 2018
- [j19]Jinbo Chen, Uwe Scholz, Ruonan Zhou, Matthias Lange:
LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j18]Sebastian Beier, Thomas Thiel, Thomas Münch, Uwe Scholz, Martin Mascher:
MISA-web: a web server for microsatellite prediction. Bioinform. 33(16): 2583-2585 (2017) - 2016
- [j17]Daniel Arend, Astrid Junker, Uwe Scholz, Danuta Schüler, Juliane Wylie, Matthias Lange:
PGP repository: a plant phenomics and genomics data publication infrastructure. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [c20]Christian Colmsee, Jinbo Chen, Kerstin Schneider, Uwe Scholz, Matthias Lange:
Improving search results in life science by recommendations based on semantic information. BTW Workshops 2015: 115-120 - 2014
- [j16]Daniel Arend, Matthias Lange, Jinbo Chen, Christian Colmsee, Steffen Flemming, Denny Hecht, Uwe Scholz:
e!DAL - a framework to store, share and publish research data. BMC Bioinform. 15: 214 (2014) - [j15]Maria Esch, Jinbo Chen, Stephan Weise, Keywan Hassani-Pak, Uwe Scholz, Matthias Lange:
A Query Suggestion Workflow for Life Science IR-Systems. J. Integr. Bioinform. 11(2) (2014) - [c19]Daniel Arend, Christian Colmsee, Helmut Knüpffer, Markus Oppermann, Uwe Scholz, Danuta Schüler, Stephan Weise, Matthias Lange:
Data Management Experiences and Best Practices from the Perspective of a Plant Research Institute. DILS 2014: 41-49 - 2013
- [j14]Martin Mascher, Ingo Schubert, Uwe Scholz, Swetlana Friedel:
Patterns of nucleotide asymmetries in plant and animal genomes. Biosyst. 111(3): 181-189 (2013) - [c18]Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Matthias Lange, Martin Mascher, Stephan Weise, Uwe Scholz, Falk Schreiber:
OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences. GI-Jahrestagung 2013: 1834-1840 - 2012
- [j13]Hendrik Mehlhorn, Matthias Lange, Uwe Scholz, Falk Schreiber:
IDPredictor: predict database links in biomedical database. J. Integr. Bioinform. 9(2) (2012) - [j12]Falk Schreiber, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Uwe Scholz, Stephan Weise:
MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40(Database-Issue): 1173-1177 (2012) - [c17]Daniel Arend, Matthias Lange, Christian Colmsee, Steffen Flemming, Jinbo Chen, Uwe Scholz:
The e!DAL JAVA-API: Store, share and cite primary data in life sciences. BIBM 2012: 1-5 - [c16]Daniel Arend, Matthias Lange, Christian Colmsee, Steffen Flemming, Jinbo Chen, Uwe Scholz:
The e!DAL JAVA-API: Store, share and cite primary data in life sciences. BIBM Workshops 2012: 927-929 - [c15]Matthias Lange, Jinbo Chen, Uwe Scholz:
Information Retrieval in Life Sciences: The LAILAPS Search Engine. GI-Jahrestagung 2012: 1552-1558 - 2011
- [j11]Stephan Weise, Jinbo Chen, Björn H. Junker, Matthias Klapperstück, Matthias Lange, Falk Schreiber, Uwe Scholz:
Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen. it Inf. Technol. 53(5): 234-240 (2011) - 2010
- [j10]Matthias Lange, Karl Spies, Joachim Bargsten, Gregor Haberhauer, Matthias Klapperstück, Michael Leps, Christian Weinel, Röbbe Wünschiers, Mandy Weißbach, Jens Stein, Uwe Scholz:
The LAILAPS Search Engine: Relevance Ranking in Life Science Databases. J. Integr. Bioinform. 7(2) (2010) - [j9]Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. J. Integr. Bioinform. 7(3) (2010) - [j8]Matthias Lange, Karl Spies, Christian Colmsee, Steffen Flemming, Matthias Klapperstück, Uwe Scholz:
The LAILAPS Search Engine: A Feature Model for Relevance Ranking in Life Science Databases. J. Integr. Bioinform. 7(3) (2010)
2000 – 2009
- 2009
- [c14]Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. DILS 2009: 196-203 - [c13]Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen. GI Jahrestagung 2009: 693-697 - [c12]Wolfram Schoor, Rüdiger Mecke, Udo Seiffert, Felix Bollenbeck, Uwe Scholz:
Remote Rendering of Large Biological Datasets. GRAPP 2009: 223-227 - 2008
- [j7]Eva Grafahrend-Belau, Stephan Weise, Dirk Koschützki, Uwe Scholz, Björn H. Junker, Falk Schreiber:
MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Res. 36(Database-Issue): 954-958 (2008) - 2007
- [j6]Christian Künne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise:
Using Data Warehouse Technology in Crop Plant Bioinformatics. J. Integr. Bioinform. 4(1) (2007) - [j5]Matthias Lange, Axel Himmelbach, Patrick Schweizer, Uwe Scholz:
Data Linkage Graph: computation, querying and knowledge discovery of life science database networks. J. Integr. Bioinform. 4(3) (2007) - 2006
- [j4]Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker:
Meta-All: a system for managing metabolic pathway information. BMC Bioinform. 7: 465 (2006) - 2005
- [j3]Christian Künne, Matthias Lange, T. Funke, H. Miehe, Thomas Thiel, Ivo Grosse, Uwe Scholz:
CR-EST: a resource for crop ESTs. Nucleic Acids Res. 33(Database-Issue): 619-621 (2005) - 2004
- [c11]Sören Balko, Matthias Lange, Roland Schnee, Uwe Scholz:
BioDataServer: an Applied Molecular Biological Data Integration Service. DILS 2004: 140-155 - 2002
- [b1]Uwe Scholz:
FRIDAQ - ein Framework zur Integration molekularbiologischer Datenbestände. Otto-von-Guericke University Magdeburg, Germany, Shaker 2002, ISBN 978-3-8322-0991-9, pp. 1-171 - [j2]Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz, Andreas Stephanik:
BioDataServer: A SQL-based service for the online integration of life science data. Silico Biol. 2(2): 37-57 (2002) - [j1]Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis. Silico Biol. 2(3): 407-414 (2002) - [c10]Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz:
Information Fusion and Metabolic Network Control. Gene Regulations and Metabolism 2002: 49-84 - 2001
- [c9]Matthias Lange, Andreas Freier, Uwe Scholz, Andreas Stephanik:
A Computational Support for the Access to Integrated Molecular Biology Data. German Conference on Bioinformatics 2001: 203-205 - [c8]Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. German Conference on Bioinformatics 2001: 228-231 - [c7]Ralf Kauert, Thoralf Töpel, Uwe Scholz, Ralf Hofestädt:
Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases. MedInfo 2001: 353-356 - [c6]Ulrike Mischke, Uwe Scholz, Thoralf Töpel, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. MedInfo 2001: 970-974
1990 – 1999
- 1999
- [c5]Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz:
MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. German Conference on Bioinformatics 1999: 190-194 - [c4]Ralf Hofestädt, Ulrike Mischke, Manuela Prüß, Uwe Scholz:
Metabolic Drug Pointing and Information Processing. MIE 1999: 12-15 - 1998
- [c3]Michael Höding, Ralf Hofestädt, Gunter Saake, Uwe Scholz:
Schema Derivation for WWW Information Sources and Their Integration with Databases in Bioinformatics. ADBIS 1998: 296-304 - [c2]Ralf Hofestädt, Manuela Prüß, Uwe Scholz, Holger Urban:
The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors. German Conference on Bioinformatics 1998 - [c1]Uwe Scholz, Michael Höding:
Erste Erfahrungen bei der Integration heterogener Informationssysteme in der Bioinformatik. Workshop Integration heterogener Softwaresysteme 1998: 96-101
Coauthor Index
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