Data Integration between Swedish National Clinical Health Registries and Biobanks Using an Availability System. - Spjuth, Ola; Heikkinen, Jani; Litton, Jan-Eric; Palmgren, Juni; Krestyaninova, Maria (2014)

Services Design in a Collaborative Network for Multidisciplinary Research Projects. - Krestyaninova, Maria; Tammisto, Yulia (2012)

SAIL - a software system for sample and phenotype availability across biobanks and cohorts. - Gostev, Mikhail; Fernandez-Banet, Julio; Rung, Johan; Dietrich, Joern; Prokopenko, Inga; Ripatti, Samuli; McCarthy, Mark I.; Brazma, Alvis; Krestyaninova, Maria (Bioinform., 2011)

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases. - Antonov, Alexey V.; Schmidt, Esther; Dietmann, Sabine; Krestyaninova, Maria; Hermjakob, Henning (Nucleic Acids Res., 2010)

A System for Information Management in BioMedical Studies - SIMBioMS. - Krestyaninova, Maria; Zarins, Andris; Viksna, Juris; Kurbatova, Natalja; Rucevskis, Peteris; Neogi, Sudeshna Guha; Gostev, Mike; Perheentupa, Teemu; Knuuttila, Juha; Barrett, Amy; Lappalainen, Ilkka; Rung, Johan; et al. (Bioinform., 2009)

ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. - Parkinson, Helen E.; Kapushesky, Misha; Kolesnikov, Nikolay; Rustici, Gabriella; Shojatalab, Mohammadreza; Abeygunawardena, Niran; Bérubé, Hugo; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Holloway, Ele; Lukk, Margus; et al. (Nucleic Acids Res., 2009)

PASSIM - an open source software system for managing information in biomedical studies. - Viksna, Juris; Celms, Edgars; Opmanis, Martins; Podnieks, Karlis; Rucevskis, Peteris; Zarins, Andris; Barrett, Amy; Neogi, Sudeshna Guha; Krestyaninova, Maria; McCarthy, Mark I.; Brazma, Alvis; Sarkans, Ugis (BMC Bioinform., 2007)

InterPro, progress and status in 2005. - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Teresa K.; Bairoch, Amos; Bateman, Alex; Binns, David; Bradley, Paul; Bork, Peer; Bucher, Phillip; Cerutti, Lorenzo; Copley, Richard R.; Courcelle, Emmanuel; et al. (Nucleic Acids Res., 2005)

The InterPro Database, 2003 brings increased coverage and new features. - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Terri K.; Bairoch, Amos; Barrell, Daniel; Bateman, Alex; Binns, David; Biswas, Margaret; Bradley, Paul; Bork, Peer; Bucher, Philipp; Copley, Richard R.; et al. (Nucleic Acids Res., 2003)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Mulder, Nicola J.; Apweiler, Rolf; Attwood, Terri K.; Bairoch, Amos; Bateman, Alex; Binns, David; Biswas, Margaret; Bradley, Paul; Bork, Peer; Bucher, Philipp; Copley, Richard R.; Courcelle, Emmanuel; et al. (Briefings Bioinform., 2002)