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Anton I. Korobeynikov
2020 – today
- 2023
- [j14]Lorna J. Richardson
, Ben Allen
, Germana Baldi
, Martin Beracochea
, Maxwell L. Bileschi, Tony Burdett
, Josephine Burgin
, Juan Caballero
, Guy Cochrane
, Lucy J. Colwell, Tom Curtis, Alejandra Escobar-Zepeda
, Tatiana A. Gurbich
, Varsha Kale
, Anton I. Korobeynikov, Shriya Raj
, Alexander B. Rogers
, Ekaterina A. Sakharova
, Santiago Sanchez
, Darren J. Wilkinson, Robert D. Finn
:
MGnify: the microbiome sequence data analysis resource in 2023. Nucleic Acids Res. 51(D1): 753-759 (2023) - 2021
- [j13]Dmitry Meleshko, Iman Hajirasouliha, Anton I. Korobeynikov
:
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies. Bioinform. 38(1): 1-8 (2021) - 2020
- [j12]Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
:
Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. BMC Bioinform. 21(1): 362 (2020) - [j11]Yulia Kondratenko
, Anton I. Korobeynikov, Alla L. Lapidus
:
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. BMC Bioinform. 21-S(12): 303 (2020) - [j10]Tatiana Dvorkina
, Dmitry Antipov, Anton I. Korobeynikov, Sergey Nurk:
SPAligner: alignment of long diverged molecular sequences to assembly graphs. BMC Bioinform. 21-S(12): 306 (2020) - [j9]Alex L. Mitchell
, Alexandre Almeida
, Martin Beracochea
, Miguel A. Boland
, Josephine Burgin
, Guy Cochrane
, Michael R. Crusoe, Varsha Kale
, Simon C. Potter, Lorna J. Richardson
, Ekaterina A. Sakharova
, Maxim Scheremetjew
, Anton I. Korobeynikov
, Alexander Shlemov
, Olga Kunyavskaya, Alla L. Lapidus
, Robert D. Finn
:
MGnify: the microbiome analysis resource in 2020. Nucleic Acids Res. 48(Database-Issue): D570-D578 (2020)
2010 – 2019
- 2019
- [j8]Vasily Ershov
, Artem Tarasov, Alla L. Lapidus
, Anton I. Korobeynikov:
IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction. J. Comput. Biol. 26(2): 124-127 (2019) - [c4]Alexander Shlemov
, Anton I. Korobeynikov
:
PathRacer: Racing Profile HMM Paths on Assembly Graph. AlCoB 2019: 80-94 - [r1]Andrey D. Prjibelski, Anton I. Korobeynikov, Alla L. Lapidus
:
Sequence Analysis. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 292-322 - 2017
- [c3]Anastasiia Abramova, Anton I. Korobeynikov:
Assessing the Significance of Peptide Spectrum Match Scores. WABI 2017: 14:1-14:11 - 2016
- [j7]Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner:
hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinform. 32(7): 1009-1015 (2016) - [c2]Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner:
metaSPAdes: A New Versatile de novo Metagenomics Assembler. RECOMB 2016: 258 - 2015
- [j6]Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich
, Anton I. Korobeynikov, Pavel A. Pevzner:
Assembling short reads from jumping libraries with large insert sizes. Bioinform. 31(20): 3262-3268 (2015) - 2014
- [j5]Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich
, Alexey A. Gurevich
, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov
, Alla L. Lapidus
, Pavel A. Pevzner:
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30(12): 293-301 (2014) - [j4]Nina Golyandina
, Anton I. Korobeynikov
:
Basic Singular Spectrum Analysis and forecasting with R. Comput. Stat. Data Anal. 71: 934-954 (2014) - 2013
- [j3]Sergey I. Nikolenko
, Anton I. Korobeynikov
, Max A. Alekseyev
:
BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genom. 14(S-1): S7 (2013) - [j2]Sergey Nurk, Anton Bankevich
, Dmitry Antipov, Alexey A. Gurevich
, Anton I. Korobeynikov
, Alla L. Lapidus
, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin
, Yakov Sirotkin, Ramunas Stepanauskas
, Scott R. Clingenpeel
, Tanja Woyke
, Jeffrey S. McLean
, Roger Lasken, Glenn Tesler, Max A. Alekseyev
, Pavel A. Pevzner:
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20(10): 714-737 (2013) - [c1]Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich
, Anton I. Korobeynikov
, Alla L. Lapidus
, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin
, Yakov Sirotkin, Ramunas Stepanauskas
, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel
, Tanja Woyke, Glenn Tesler, Max A. Alekseyev
, Pavel A. Pevzner:
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB 2013: 158-170 - 2012
- [j1]Anton I. Korobeynikov
:
Consistency of Parametric MLE Under Mixed Case Interval Censoring. Commun. Stat. Simul. Comput. 41(7): 1083-1092 (2012) - [i2]Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev:
BayesHammer: Bayesian clustering for error correction in single-cell sequencing. CoRR abs/1211.2756 (2012)
2000 – 2009
- 2009
- [i1]Anton I. Korobeynikov:
Computation- and Space-Efficient Implementation of SSA. CoRR abs/0911.4498 (2009)
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