Finding driver mutations in cancer: Elucidating the role of background mutational processes - Anna-Leigh Brown; Minghui Li; Alexander Goncearenco; Anna R. Panchenko (PLoS Comput. Biol., 2019)

Mutational signatures and mutable motifs in cancer genomes - Igor B. Rogozin; Youri I. Pavlov; Alexander Goncearenco; Subhajyoti De; Artem G. Lada; Eugenia Poliakov; Anna R. Panchenko; David N. Cooper (Briefings Bioinform., 2018)

Exploring background mutational processes to decipher cancer genetic heterogeneity - Alexander Goncearenco; Stephanie L. Rager; Minghui Li; Qing-Xiang Sang; Igor B. Rogozin; Anna R. Panchenko (Nucleic Acids Res., 2017)

HistoneDB 2.0: a histone database with variants - an integrated resource to explore histones and their variants - Eli J. Draizen; Alexey K. Shaytan; Leonardo Mariño-Ramírez; Paul B. Talbert; David Landsman; Anna R. Panchenko (Database J. Biol. Databases Curation, 2016)

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions - Minghui Li; Franco L. Simonetti; Alexander Goncearenco; Anna R. Panchenko (Nucleic Acids Res., 2016)

Database resources of the National Center for Biotechnology Information - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M. Fingerman; et al. (Nucleic Acids Res., 2012)

MMDB: 3D structures and macromolecular interactions - Thomas Madej; Kenneth J. Addess; Jessica H. Fong; Lewis Y. Geer; Renata C. Geer; Christopher J. Lanczycki; Chunlei Liu; Shennan Lu; Aron Marchler-Bauer; Anna R. Panchenko; Jie Chen; Paul A. Thiessen; et al. (Nucleic Acids Res., 2012)

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins - Benjamin A. Shoemaker; Dachuan Zhang; Manoj Tyagi; Ratna R. Thangudu; Jessica H. Fong; Aron Marchler-Bauer; Stephen H. Bryant; Thomas Madej; Anna R. Panchenko (Nucleic Acids Res., 2012)

SPEER-SERVER: a web server for prediction of protein specificity determining sites - Abhijit Chakraborty; Sapan Mandloi; Christopher J. Lanczycki; Anna R. Panchenko; Saikat Chakrabarti (Nucleic Acids Res., 2012)

Database resources of the National Center for Biotechnology Information - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M. Fingerman; et al. (Nucleic Acids Res., 2011)

State of the art: refinement of multiple sequence alignments - Saikat Chakrabarti; Christopher J. Lanczycki; Anna R. Panchenko; Teresa M. Przytycka; Paul A. Thiessen; Stephen H. Bryant (BMC Bioinform., 2010)

Knowledge-based annotation of small molecule binding sites in proteins - Ratna R. Thangudu; Manoj Tyagi; Benjamin A. Shoemaker; Stephen H. Bryant; Anna R. Panchenko; Thomas Madej (BMC Bioinform., 2010)

Database resources of the National Center for Biotechnology Information - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Lewis Y. Geer; et al. (Nucleic Acids Res., 2010)

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder - Michail Yu. Lobanov; Benjamin A. Shoemaker; Sergiy O. Garbuzynskiy; Jessica H. Fong; Anna R. Panchenko; Oxana V. Galzitskaya (Nucleic Acids Res., 2010)

Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites - Benjamin A. Shoemaker; Dachuan Zhang; Ratna R. Thangudu; Manoj Tyagi; Jessica H. Fong; Aron Marchler-Bauer; Stephen H. Bryant; Tom Madej; Anna R. Panchenko (Nucleic Acids Res., 2010)

Ensemble approach to predict specificity determinants: benchmarking and validation - Saikat Chakrabarti; Anna R. Panchenko (BMC Bioinform., 2009)

Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis - Jessica H. Fong; Benjamin A. Shoemaker; Sergiy O. Garbuzynskiy; Michail Yu. Lobanov; Oxana V. Galzitskaya; Anna R. Panchenko (PLoS Comput. Biol., 2009)

Advances in Bioinformatics and Computational Biology, 4th Brazilian Symposium on Bioinformatics, BSB 2009, Porto Alegre, Brazil, July 29-31, 2009. Proceedings - Katia S. Guimarães; Anna R. Panchenko; Teresa M. Przytycka (Springer, 2009)

Handling Diverse Protein Interaction Data: Integration, Storage and Retrieval - Benjamin A. Shoemaker; Anna R. Panchenko (Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction, 2008)

Protein-protein Interactions and Networks: Identification, Computer Analysis, and Prediction - Anna R. Panchenko; Teresa M. Przytycka (Springer, 2008)

Deciphering Protein-Protein Interactions. Part I. Experimental Techniques and Databases - Benjamin A. Shoemaker; Anna R. Panchenko (PLoS Comput. Biol., 2007)

Deciphering Protein-Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners - Benjamin A. Shoemaker; Anna R. Panchenko (PLoS Comput. Biol., 2007)

State of the art: refinement of multiple sequence alignments - Saikat Chakrabarti; Christopher J. Lanczycki; Anna R. Panchenko; Teresa M. Przytycka; Paul A. Thiessen; Stephen H. Bryant (BMC Bioinform., 2006)

A structure-based method for protein sequence alignment - Maricel G. Kann; Paul A. Thiessen; Anna R. Panchenko; Alejandro A. Schäffer; Stephen F. Altschul; Stephen H. Bryant (Bioinform., 2005)

CDD: a curated Entrez database of conserved domain alignments - Aron Marchler-Bauer; John B. Anderson; Carol DeWeese-Scott; Natalie D. Fedorova; Lewis Y. Geer; Siqian He; David I. Hurwitz; John D. Jackson; Aviva R. Jacobs; Christopher J. Lanczycki; Cynthia A. Liebert; Chunlei Liu; et al. (Nucleic Acids Res., 2003)

MMDB: Entrez's 3D-structure database - Jie Chen; John B. Anderson; Carol DeWeese-Scott; Natalie D. Fedorova; Lewis Y. Geer; Siqian He; David I. Hurwitz; John D. Jackson; Aviva R. Jacobs; Christopher J. Lanczycki; Cynthia A. Liebert; Chunlei Liu; et al. (Nucleic Acids Res., 2003)

MMDB: Entrez's 3D-structure database - Yanli Wang; John B. Anderson; Jie Chen; Lewis Y. Geer; Siqian He; David I. Hurwitz; Cynthia A. Liebert; Thomas Madej; Gabriele H. Marchler; Aron Marchler-Bauer; Anna R. Panchenko; Benjamin A. Shoemaker; et al. (Nucleic Acids Res., 2002)

CDD: a database of conserved domain alignments with links to domain three-dimensional structure - Aron Marchler-Bauer; Anna R. Panchenko; Benjamin A. Shoemaker; Paul A. Thiessen; Lewis Y. Geer; Stephen H. Bryant (Nucleic Acids Res., 2002)