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Venkata P. Satagopam
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2020 – today
- 2024
- [j23]Carlos Vega
, Marek Ostaszewski
, Valentin Grouès
, Reinhard Schneider
, Venkata P. Satagopam
:
BioKC: a collaborative platform for curation and annotation of molecular interactions. Database J. Biol. Databases Curation 2024 (2024) - 2023
- [j22]Piotr Gawron, David Hoksza, Janet Piñero, María Peña-Chilet, Marina Esteban-Medina, Jose Luis Fernandez-Rueda, Vincenza Colonna, Ewa Smula, Laurent Heirendt, François Ancien, Valentin Grouès, Venkata P. Satagopam, Reinhard Schneider, Joaquín Dopazo, Laura I. Furlong, Marek Ostaszewski:
Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers Bioinform. 3 (2023) - [j21]Alexander Mazein, Marcio Luis Acencio
, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz
, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer
, Reinhard Schneider, Marek Ostaszewski:
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers Bioinform. 3 (2023) - [j20]Carlos Vega, Reinhard Schneider, Venkata P. Satagopam:
Analysis: Flawed Datasets of Monkeypox Skin Images. J. Medical Syst. 47(1): 37 (2023) - [c7]Wei Gu
, Christophe Trefois
, Pinar Alper, Danielle Welter
, Yohan Jarosz, Jacek Lebioda, Linda Ebermann, Regina Becker, Venkata P. Satagopam, Reinhard Schneider, Bert Verdonck:
RDM Services at the Luxembourg National Data Service. CoRDI 2023 - [c6]Dagmar Waltemath
, Esther Thea Inau
, Lea Michaelis
, Venkata P. Satagopam
, Irina Balaur
:
Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. CoRDI 2023 - 2022
- [j19]Miroslav Kratochvíl
, Laurent Heirendt
, St Elmo Wilken
, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst
, Venkata P. Satagopam
, Oliver Ebenhöh
, Reinhard Schneider
, Christophe Trefois
, Wei Gu
:
COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinform. 38(4): 1171-1172 (2022) - [j18]Valentin Grouès
, Carlos Vega
, Venkata P. Satagopam
:
A formalization of one of the main claims of "Mutations in STX1B, encoding a presynaptic protein, cause fever-associated epilepsy syndromes" by Schubert et al. 20141. Data Sci. 5(1): 71-73 (2022) - [c5]Carlos Vega
, Miroslav Kratochvíl
, Venkata P. Satagopam
, Reinhard Schneider
:
Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. IWBBIO (2) 2022: 353-358 - 2021
- [j17]Michael Bernhofer
, Christian Dallago
, Timothy Karl, Venkata P. Satagopam
, Michael Heinzinger, Maria Littmann, Tobias Olenyi
, Jiajun Qiu
, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy
, Nir Ben-Tal
, Yana Bromberg
, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita
, Piotr Gawron, Wei Gu
, Yohan Jarosz, Christophe Trefois
, Martin Steinegger
, Reinhard Schneider
, Burkhard Rost
:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021)
2010 – 2019
- 2019
- [j16]Adriano Barbosa-Silva
, Dorina Bratfalean, Wei Gu
, Venkata P. Satagopam
, Paul Houston
, Lauren B. Becnel, Serge Eifes, Fabien Richard, Andreas Tielmann, Sascha Herzinger, Kavita Rege, Rudi Balling
, Paul Peeters:
Presenting and sharing clinical data using the eTRIKS Standards Master Tree for tranSMART. Bioinform. 35(9): 1562-1565 (2019) - [j15]Wei Gu
, Reha Yildirimman, Emmanuel Van der Stuyft, Denny Verbeeck, Sascha Herzinger, Venkata P. Satagopam
, Adriano Barbosa-Silva
, Reinhard Schneider
, Bodo M. H. Lange, Hans Lehrach, Yike Guo, David Henderson
, Anthony Rowe
:
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinform. 20(1): 164:1-164:11 (2019) - 2018
- [j14]Anupama Jigisha, Margherita Francescatto
, Farzana Rahman
, Nazeefa Fatima
, Dan F. DeBlasio
, Avinash Kumar Shanmugam, Venkata P. Satagopam
, Alberto Santos
, Pandurang Kolekar
, Magali Michaut, Emre Guney
:
The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide. PLoS Comput. Biol. 14(1) (2018) - [c4]Pinar Alper
, Regina Becker, Venkata P. Satagopam, Christophe Trefois
, Valentin Grouès
, Jacek Lebioda, Yohan Jarosz:
Provenance-Enabled Stewardship of Human Data in the GDPR Era. IPAW 2018: 266-269 - 2017
- [j13]Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata P. Satagopam
, Burkhard Rost
:
nala: text mining natural language mutation mentions. Bioinform. 33(12): 1852-1858 (2017) - [j12]Sascha Herzinger, Wei Gu
, Venkata P. Satagopam
, Serge Eifes, Kavita Rege, Adriano Barbosa-Silva
, Reinhard Schneider
:
SmartR: an open-source platform for interactive visual analytics for translational research data. Bioinform. 33(14): 2229-2231 (2017) - [c3]Maria Biryukov, Valentin Grouès, Venkata P. Satagopam:
BioKB - Text mining and semantic technologies for the biomedical content discovery. SWAT4LS 2017 - [i2]Laurent Heirendt, Sylvain Arreckx, Christophe Trefois, Yohan Yarosz, Maharshi Vyas, Venkata P. Satagopam, Reinhard Schneider, Ines Thiele, Ronan M. T. Fleming:
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software. CoRR abs/1712.05236 (2017) - [i1]Merlijn N. van Rijswijk
, Charlie Beirnaert
, Christophe Caron, Marta Cascante
, Victoria Dominguez Del Angel
, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán
, Thomas Hankemeier, Kenneth Haug
, Jose L. Izquierdo-García
, Rafael C. Jiménez
, Fabien Jourdan, Namrata Kale
, Maria I. Klapa
, Oliver Kohlbacher
, Kairi Koort, Kim Kultima, Gildas Le Corguillé
, Nicholas K. Moschonas
, Steffen Neumann
, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato
, Reza M. Salek
, Susanna-Assunta Sansone
, Venkata P. Satagopam
, Daniel Schober
, Ruth Shimmo, Rachel A. Spicer
, Ola Spjuth
, Etienne A. Thévenot
, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen
, Gianluigi Zanetti, Christoph Steinbeck
:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2016
- [j11]Venkata P. Satagopam
, Wei Gu
, Serge Eifes, Piotr Gawron, Marek Ostaszewski
, Stephan Gebel, Adriano Barbosa-Silva
, Rudi Balling
, Reinhard Schneider
:
Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data 4(2): 97-108 (2016) - [c2]Valentin Grouès, Maria Biryukov, Christophe Trefois, Venkata P. Satagopam:
Semantic Web Technologies for a Knowledge Base of Biomedical Facts Extracted from Scientific Literature. SWAT4LS 2016 - 2015
- [j10]Nikolas Papanikolaou, Georgios A. Pavlopoulos
, Evangelos Pafilis, Theodosios Theodosiou
, Reinhard Schneider
, Venkata P. Satagopam
, Christos A. Ouzounis
, Aristides G. Eliopoulos
, Vasilis J. Promponas
, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31(6): 979 (2015) - 2014
- [j9]Nikolas Papanikolaou, Georgios A. Pavlopoulos
, Evangelos Pafilis, Theodosios Theodosiou
, Reinhard Schneider
, Venkata P. Satagopam
, Christos A. Ouzounis
, Aristides G. Eliopoulos
, Vasilis J. Promponas
, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30(22): 3249-3256 (2014) - [j8]Norman E. Davey
, Venkata P. Satagopam
, Salvador Santiago-Mozos, Carlos Villacorta-Martin, Tanmay A. M. Bharat
, Reinhard Schneider
, John A. G. Briggs:
The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j7]Jeroen de Ridder
, Thomas Abeel
, Magali Michaut
, Venkata P. Satagopam, Nils Gehlenborg
:
Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator. PLoS Comput. Biol. 9(1) (2013) - [j6]Jeroen de Ridder
, Yana Bromberg
, Magali Michaut
, Venkata P. Satagopam
, Manuel Corpas
, Geoff MacIntyre
, Theodore Alexandrov
:
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Comput. Biol. 9(11) (2013) - [c1]Evangelos Pafilis, Georgios A. Pavlopoulos
, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis
, Lars Juhl Jensen
, Reinhard Schneider, Ioannis Iliopoulos:
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE 2013: 1-4 - 2012
- [j5]Theodoros G. Soldatos
, Seán I. O'Donoghue
, Venkata P. Satagopam
, Adriano Barbosa-Silva
, Georgios A. Pavlopoulos
, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider
:
Caipirini: using gene sets to rank literature. BioData Min. 5: 1 (2012) - 2010
- [j4]Venkata P. Satagopam
, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas:
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010) - [j3]Seán I. O'Donoghue
, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam
, Reinhard Schneider, Lars Juhl Jensen
:
Reflect: A practical approach to web semantics. J. Web Semant. 8(2-3): 182-189 (2010)
2000 – 2009
- 2008
- [j2]Adriano Barbosa-Silva
, Venkata P. Satagopam
, Reinhard Schneider, José Miguel Ortega:
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinform. 9 (2008) - [j1]Georgios A. Pavlopoulos
, Seán I. O'Donoghue
, Venkata P. Satagopam
, Theodoros G. Soldatos
, Evangelos Pafilis, Reinhard Schneider:
Arena3D: visualization of biological networks in 3D. BMC Syst. Biol. 2: 104 (2008)
Coauthor Index
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last updated on 2024-08-05 20:24 CEST by the dblp team
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