Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis Initiative. - Woo, Boyeong; Engstrom, Craig; Baresic, William; Fripp, Jurgen; Crozier, Stuart; Chandra, Shekhar S. (Medical Image Anal., 2024)

Accuracy of TrUE-Net in comparison to established white matter hyperintensity segmentation methods: An independent validation study. - Strain, Jeremy F.; Rahmani, Maryam; Dierker, Donna L.; Owen, Christopher J.; Jafri, Hussain; Vlassenko, Andrei G.; Womack, Kyle B.; Fripp, Jurgen; Tosun, Duygu; Benzinger, Tammie L. S.; Weiner, Michael; Masters, Colin L.; et al. (NeuroImage, 2024)

Early brain morphometrics from neonatal MRI predict motor and cognitive outcomes at 2-years corrected age in very preterm infants. - Pagnozzi, Alex M.; Eijk, Liza van; Pannek, Kerstin; Boyd, Roslyn N.; Saha, Susmita; George, Joanne; Bora, Samudragupta; Bradford, DanaKai; Fahey, Michael; Ditchfield, Michael; Malhotra, Atul; Liley, Helen G.; et al. (NeuroImage, 2023)

Functional re-organization of hippocampal-cortical gradients during naturalistic memory processes. - Borne, Léonie; Tian, Ye; Lupton, Michelle K.; Meer, Johan N. van der; Jeganathan, Jayson; Paton, Bryan; Koussis, Nikitas; Guo, Christine C.; Robinson, Gail A.; Fripp, Jurgen; Zalesky, Andrew; Breakspear, Michael (NeuroImage, 2023)

Disease progression modelling of Alzheimer's disease using probabilistic principal components analysis. - Saint-Jalmes, Martin; Fedyashov, Victor; Beck, Daniel; Baldwin, Timothy; Faux, Noel G.; Bourgeat, Pierrick; Fripp, Jurgen; Masters, Colin L.; Goudey, Benjamin (NeuroImage, 2023)

Generalization Properties of Geometric 3D Deep Learning Models for Medical Segmentation. - Lebrat, Léo; Cruz, Rodrigo Santa; Dorent, Reuben; Yaksic, Javier Urriola; Pagnozzi, Alex M.; Belous, Gregg; Bourgeat, Pierrick; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (2023)

Medical Shape Pattern Analysis with MeshCNN. - Leung, Sze-Nung; Dowling, Jason A.; Fripp, Jurgen; Shen, Kai-Kai; Chandra, Shekhar S. (2023)

When to Use Augmentation - Variability Insufficient for Cortical Thickness Estimation Improvement. - Rusak, Filip; Cruz, Rodrigo Santa; Chourak, Hilda; Smith, Elliot; Fripp, Jurgen; Fookes, Clinton; Bourgeat, Pierrick; Bradley, Andrew P. (2023)

An Informatics Platform for the Management of Data for Australian Dementia Network (ADNeT) Initiative. - Trinder, Julie; Bourgeat, Pierrick; Xia, Ying; Fripp, Jurgen; Raniga, Parnesh (2023)

Semantic Segmentation of 3D Medical Images Through a Kaleidoscope: Data from the Osteoarthritis Initiative. - Woo, Boyeong; Lorenzana, Marlon Bran; Engstrom, Craig; Baresic, William; Fripp, Jurgen; Crozier, Stuart; Chandra, Shekhar S. (2023)

DBCE : A Saliency Method for Medical Deep Learning Through Anatomically-Consistent Free-Form Deformations. - Peters, Joshua; Lebrat, Léo; Cruz, Rodrigo Santa; Nicolson, Aaron; Belous, Gregg; Konate, Salamata; Raniga, Parnesh; Doré, Vincent; Bourgeat, Pierrick; Mejan-Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (2023)

Gene-SGAN: a method for discovering disease subtypes with imaging and genetic signatures via multi-view weakly-supervised deep clustering. - Yang, Zhijian; Wen, Junhao; Abdulkadir, Ahmed; Cui, Yuhan; Erus, Güray; Mamourian, Elizabeth; Melhem, Randa; Srinivasan, Dhivya; Govindarajan, Sindhuja T.; Chen, Jiong; Habes, Mohamad; Masters, Colin L.; et al. (CoRR, 2023)

Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T. - Chang, Jeryn; Steyn, Frederik; Ngo, Shyuan; Henderson, Robert; Guo, Christine Cong; Bollmann, Steffen; Fripp, Jurgen; Barth, Markus; Shaw, Thomas B. (J. Open Source Softw., 2022)

Quantifiable brain atrophy synthesis for benchmarking of cortical thickness estimation methods. - Rusak, Filip; Cruz, Rodrigo Santa; Lebrat, Léo; Hlinka, Ondrej; Fripp, Jurgen; Smith, Elliot; Fookes, Clinton; Bradley, Andrew P.; Bourgeat, Pierrick (Medical Image Anal., 2022)

β-amyloid PET harmonisation across longitudinal studies: Application to AIBL, ADNI and OASIS3. - Bourgeat, Pierrick; Doré, Vincent; Burnham, Samantha; Benzinger, Tammie L. S.; Tosun, Duygu; Li, Shenpeng; Goyal, Manu S.; LaMontagne, Pamela; Jin, Liang; Rowe, Christopher C.; Weiner, Michael W.; Morris, John C.; et al. (NeuroImage, 2022)

Trans-ResNet: Integrating Transformers and CNNs for Alzheimer's disease classification. - Li, Chao; Cui, Yue; Luo, Na; Liu, Yong; Bourgeat, Pierrick; Fripp, Jurgen; Jiang, Tianzi (2022)

Lesser of Two Evils Improves Learning in the Context of Cortical Thickness Estimation Models - Choose Wisely. - Rusak, Filip; Cruz, Rodrigo Santa; Smith, Elliot; Fripp, Jurgen; Fookes, Clinton; Bourgeat, Pierrick; Bradley, Andrew P. (2022)

CorticalFlow++: Boosting Cortical Surface Reconstruction Accuracy, Regularity, and Interoperability. - Cruz, Rodrigo Santa; Lebrat, Léo; Fu, Darren; Bourgeat, Pierrick; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (2022)

Anomaly-Aware 3D Segmentation of Knee Magnetic Resonance Images. - Woo, Boyeong; Engstrom, Craig; Fripp, Jurgen; Crozier, Stuart; Chandra, Shekhar S. (2022)

CorticalFlow: A Diffeomorphic Mesh Deformation Module for Cortical Surface Reconstruction. - Lebrat, Léo; Cruz, Rodrigo Santa; Gournay, Frédéric de; Fu, Darren; Bourgeat, Pierrick; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (CoRR, 2022)

CorticalFlow++: Boosting Cortical Surface Reconstruction Accuracy, Regularity, and Interoperability. - Cruz, Rodrigo Santa; Lebrat, Léo; Fu, Darren; Bourgeat, Pierrick; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (CoRR, 2022)

Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis Initiative. - Woo, Boyeong; Engstrom, Craig; Baresic, William; Fripp, Jurgen; Crozier, Stuart; Chandra, Shekhar S. (CoRR, 2022)

Non-negative matrix factorisation improves Centiloid robustness in longitudinal studies. - Bourgeat, Pierrick; Doré, Vincent; Doecke, James; Ames, David; Masters, Colin L.; Rowe, Christopher C.; Fripp, Jurgen; Villemagne, Victor L. (NeuroImage, 2021)

SA-LuT-Nets: Learning Sample-Adaptive Intensity Lookup Tables for Brain Tumor Segmentation. - Yu, Biting; Zhou, Luping; Wang, Lei; Yang, Wanqi; Yang, Ming; Bourgeat, Pierrick; Fripp, Jurgen (IEEE Trans. Medical Imaging, 2021)

Smocam: Smooth Conditional Attention Mask For 3d-Regression Models. - Konate, Salamata; Lebrat, Léo; Cruz, Rodrigo Santa; Bourgeat, Pierrick; Doré, Vincent; Fripp, Jurgen; Bradley, Andrew P.; Fookes, Clinton; Salvado, Olivier (2021)

Going Deeper With Brain Morphometry Using Neural Networks. - Cruz, Rodrigo Santa; Lebrat, Léo; Bourgeat, Pierrick; Doré, Vincent; Dowling, Jason; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (2021)

Towards a generalization of the MP2RAGE partial volume estimation model to account for B1+ inhomogeneities at 7T. - Beaumont, Jeremy; Acosta, Oscar; Raniga, Parnesh; Gambarota, Giulio; Fripp, Jurgen (2021)

Detail Matters: High-Frequency Content for Realistic Synthetic MRI Generation. - Rusak, Filip; Cruz, Rodrigo Santa; Smith, Elliot; Fripp, Jurgen; Fookes, Clinton; Bourgeat, Pierrick; Bradley, Andrew P. (2021)

CorticalFlow: A Diffeomorphic Mesh Transformer Network for Cortical Surface Reconstruction. - Lebrat, Léo; Cruz, Rodrigo Santa; Gournay, Frédéric de; Fu, Darren; Bourgeat, Pierrick; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (2021)

DeepCSR: A 3D Deep Learning Approach for Cortical Surface Reconstruction. - Cruz, Rodrigo Santa; Lebrat, Léo; Bourgeat, Pierrick; Fookes, Clinton; Fripp, Jurgen; Salvado, Olivier (2021)

Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan. - Pomponio, Raymond; Erus, Güray; Habes, Mohamad; Doshi, Jimit; Srinivasan, Dhivya; Mamourian, Elizabeth; Bashyam, Vishnu; Nasrallah, Ilya M.; Satterthwaite, Theodore D.; Fan, Yong; Launer, Lenore J.; Masters, Colin L.; et al. (NeuroImage, 2020)

Predicting motor outcome in preterm infants from very early brain diffusion MRI using a deep learning convolutional neural network (CNN) model. - Saha, Susmita; Pagnozzi, Alex M.; Bourgeat, Pierrick; George, Joanne; Bradford, DanaKai; Colditz, Paul B.; Boyd, Roslyn N.; Rose, Stephen E.; Fripp, Jurgen; Pannek, Kerstin (NeuroImage, 2020)

Brain microstructure and morphology of very preterm-born infants at term equivalent age: Associations with motor and cognitive outcomes at 1 and 2 years. - Pannek, Kerstin; George, Joanne; Boyd, Roslyn N.; Colditz, Paul B.; Rose, Stephen E.; Fripp, Jurgen (NeuroImage, 2020)

Sample-Adaptive GANs: Linking Global and Local Mappings for Cross-Modality MR Image Synthesis. - Yu, Biting; Zhou, Luping; Wang, Lei; Shi, Yinghuan; Fripp, Jurgen; Bourgeat, Pierrick (IEEE Trans. Medical Imaging, 2020)

Fast High Dynamic Range MRI by Contrast Enhancement Networks. - Marques, Matthew; Engstrom, Craig; Fripp, Jurgen; Crozier, Stuart; Chandra, Shekhar S. (2020)

3D Brain MRI GAN-Based Synthesis Conditioned on Partial Volume Maps. - Rusak, Filip; Cruz, Rodrigo Santa; Bourgeat, Pierrick; Fookes, Clinton; Fripp, Jurgen; Bradley, Andrew P.; Salvado, Olivier (2020)

Learning Sample-Adaptive Intensity Lookup Table for Brain Tumor Segmentation. - Yu, Biting; Zhou, Luping; Wang, Lei; Yang, Wanqi; Yang, Ming; Bourgeat, Pierrick; Fripp, Jurgen (2020)

Fabric Image Representation Encoding Networks for Large-scale 3D Medical Image Analysis. - Liu, Siyu; Dai, Wei; Engstrom, Craig; Fripp, Jurgen; Greer, Peter B.; Crozier, Stuart; Dowling, Jason A.; Chandra, Shekhar S. (CoRR, 2020)

Going deeper with brain morphometry using neural networks. - Cruz, Rodrigo Santa; Lebrat, Léo; Bourgeat, Pierrick; Doré, Vincent; Dowling, Jason; Fripp, Jurgen; Fookes, Clinton; Salvado, Olivier (CoRR, 2020)

Medical Image Harmonization Using Deep Learning Based Canonical Mapping: Toward Robust and Generalizable Learning in Imaging. - Bashyam, Vishnu M.; Doshi, Jimit; Erus, Güray; Srinivasan, Dhivya; Abdulkadir, Ahmed; Habes, Mohamad; Fan, Yong; Masters, Colin L.; Maruff, Paul; Zhuo, Chuanjun; Völzke, Henry; Johnson, Sterling C.; et al. (CoRR, 2020)

DeepCSR: A 3D Deep Learning Approach for Cortical Surface Reconstruction. - Cruz, Rodrigo Santa; Lebrat, Léo; Bourgeat, Pierrick; Fookes, Clinton; Fripp, Jurgen; Salvado, Olivier (CoRR, 2020)

Quantifying deep grey matter atrophy using automated segmentation approaches: A systematic review of structural MRI studies. - Pagnozzi, Alex M.; Fripp, Jurgen; Rose, Stephen E. (NeuroImage, 2019)

Non-linear realignment improves hippocampus subfield segmentation reliability. - Shaw, Thomas B.; Bollmann, Steffen; Atcheson, Nicole T.; Strike, Lachlan T.; Guo, Christine Cong; McMahon, Katie L.; Fripp, Jurgen; Wright, Margaret J.; Salvado, Olivier; Barth, Markus (NeuroImage, 2019)

Ea-GANs: Edge-Aware Generative Adversarial Networks for Cross-Modality MR Image Synthesis. - Yu, Biting; Zhou, Luping; Wang, Lei; Shi, Yinghuan; Fripp, Jurgen; Bourgeat, Pierrick (IEEE Trans. Medical Imaging, 2019)

High Contrast T1-Weigthed Mri with Fluid and White Matter Suppression Using Mp2Rage. - Beaumont, Jeremy; Saint-Jalmes, Hervé; Acosta, Oscar; Kober, Tobias; Tanner, Mark; Ferré, Jean-Christophe; Salvado, Olivier; Fripp, Jurgen; Gambarota, Giulio (2019)

Identification of Functional Connectivity Features in Depression Subtypes Using a Data-Driven Approach. - Li, Xingjuan; Burnham, Samantha; Fripp, Jurgen; Li, Yu; Li, Xue; Fazlollahi, Amir; Bourgeat, Pierrick (2019)

MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. - Manjón, José V.; Coupé, Pierrick; Raniga, Parnesh; Xia, Ying; Desmond, Patricia M.; Fripp, Jurgen; Salvado, Olivier (Comput. Medical Imaging Graph., 2018)

A lightweight rapid application development framework for biomedical image analysis. - Chandra, Shekhar S.; Dowling, Jason A.; Engstrom, Craig; Xia, Ying; Paproki, Anthony; Neubert, Ales; Rivest-Hénault, David; Salvado, Olivier; Crozier, Stuart; Fripp, Jurgen (Comput. Methods Programs Biomed., 2018)

Implementing the centiloid transformation for 11C-PiB and β-amyloid 18F-PET tracers using CapAIBL. - Bourgeat, Pierrick; Doré, Vincent; Fripp, Jurgen; Ames, David; Masters, Colin L.; Salvado, Olivier; Villemagne, Victor L.; Rowe, Christopher C. (NeuroImage, 2018)

3D cGAN based cross-modality MR image synthesis for brain tumor segmentation. - Yu, Biting; Zhou, Luping; Wang, Lei; Fripp, Jurgen; Bourgeat, Pierrick (2018)

Data Augmentation Using Synthetic Lesions Improves Machine Learning Detection of Microbleeds from MRI. - Momeni, Saba; Fazlollahi, Amir; Bourgeat, Pierrick; Raniga, Parnesh; Yates, Paul A.; Yassi, Nawaf; Desmond, Patricia M.; Fripp, Jurgen; Gao, Yongsheng; Salvado, Olivier (2018)

MRI Denoising and Artefact Removal Using Self-Organizing Maps for Fast Global Block-Matching. - Reid, Lee B.; Gillman, Ashley; Pagnozzi, Alex M.; Manjón, José V.; Fripp, Jurgen (2018)

A Framework to Objectively Identify Reference Regions for Normalizing Quantitative Imaging. - Fazlollahi, Amir; Ayton, Scott; Bourgeat, Pierrick; Diouf, Ibrahima; Raniga, Parnesh; Fripp, Jurgen; Doecke, James; Ames, David; Masters, Colin L.; Rowe, Christopher C.; Villemagne, Victor L.; Bush, Ashley I.; et al. (2018)

Investigating Brain Age Deviation in Preterm Infants: A Deep Learning Approach. - Saha, Susmita; Pagnozzi, Alex M.; George, Joanne; Colditz, Paul B.; Boyd, Roslyn N.; Rose, Stephen E.; Fripp, Jurgen; Pannek, Kerstin (2018)

Evaluation and comparison of 3D intervertebral disc localization and segmentation methods for 3D T2 MR data: A grand challenge. - Zheng, Guoyan; Chu, Chengwen; Belavy, Daniel L.; Ibragimov, Bulat; Korez, Robert; Vrtovec, Tomaz; Hutt, Hugo; Everson, Richard M.; Meakin, Judith; Andrade, Isabel Lopez; Glocker, Ben; Chen, Hao; et al. (Medical Image Anal., 2017)

A normalisation framework for quantitative brain imaging; application to quantitative susceptibility mapping. - Fazlollahi, Amir; Ayton, Scott; Bourgeat, Pierrick; Raniga, Parnesh; Ng, Amanda; Fripp, Jurgen; Ames, David; Masters, Colin L.; Rowe, Christopher C.; Villemagne, Victor L.; Bush, Ashley I.; Salvado, Olivier (2017)

A spatio-temporal atlas of neonatal diffusion MRI based on kernel ridge regression. - Shen, Kai-Kai; Fripp, Jurgen; Pannek, Kerstin; George, Joanne; Colditz, Paul B.; Boyd, Roslyn N.; Rose, Stephen E. (2017)

Automated cartilage segmentation from 3D MR images of hip joint using an ensemble of neural networks. - Xia, Ying; Manjón, José V.; Engstrom, Craig; Crozier, Stuart; Salvado, Olivier; Fripp, Jurgen (2017)

PET-only 18F-AV1451 tau quantification. - Bourgeat, Pierrick; Villemagne, Victor L.; Doré, Vincent; Masters, Colin L.; Ames, David; Rowe, Christopher C.; Salvado, Olivier; Fripp, Jurgen (2017)

3D Scanning System for Automatic High-Resolution Plant Phenotyping. - Nguyen, Chuong V.; Fripp, Jurgen; Lovell, David R.; Furbank, Robert; Kuffner, Peter; Daily, Helen; Sirault, Xavier (CoRR, 2017)

Statistical machine learning to identify traumatic brain injury (TBI) from structural disconnections of white matter networks. - Mitra, Jhimli; Shen, Kai-Kai; Ghose, Soumya; Bourgeat, Pierrick; Fripp, Jurgen; Salvado, Olivier; Pannek, Kerstin; Taylor, D. Jamie; Mathias, Jane L.; Rose, Stephen E. (NeuroImage, 2016)

Maximum Pseudolikelihood Estimation for Mixture-Markov Random Field Segmentation of the Brain. - Chan, Amy; Wood, Ian A.; Fripp, Jurgen (2016)

Automated Plant and Leaf Separation: Application in 3D Meshes of Wheat Plants. - Frolov, Kirill; Fripp, Jurgen; Nguyen, Chuong V.; Furbank, Robert; Bull, Geoff; Kuffner, Peter; Daily, Helen; Sirault, Xavier (2016)

3D Scanning System for Automatic High-Resolution Plant Phenotyping. - Nguyen, Chuong V.; Fripp, Jurgen; Lovell, David R.; Furbank, Robert; Kuffner, Peter; Daily, Helen; Sirault, Xavier (2016)

Automated segmentation and T2-mapping of the posterior cruciate ligament from MRI of the knee: Data from the osteoarthritis initiative. - Paproki, Anthony; Wilson, Katharine J.; Surowiec, Rachel K.; Ho, Charles P.; Pant, Abinash; Bourgeat, Pierrick; Engstrom, Craig; Crozier, Stuart; Fripp, Jurgen (2016)

Incremental shape learning of 3D surfaces of the knee, data from the osteoarthritis initiative. - Neubert, Ales; Naser, Ibrahim; Paproki, Anthony; Engstrom, Craig; Fripp, Jurgen; Crozier, Stuart; Chandra, Shekhar S. (2016)

Anatomical hubs from spectral clustering of structural connectomes. - Mitra, Jhimli; Ghose, Soumya; Bourgeat, Pierrick; Fripp, Jurgen; Mathias, Jane L.; Rose, Stephen E.; Salvado, Olivier (2016)

HIST: HyperIntensity Segmentation Tool. - Manjón, José V.; Coupé, Pierrick; Raniga, Parnesh; Xia, Ying; Fripp, Jurgen; Salvado, Olivier (2016)

CapAIBL: Automated Reporting of Cortical PET Quantification Without Need of MRI on Brain Surface Using a Patch-Based Method. - Doré, Vincent; Bourgeat, Pierrick; Villemagne, Victor L.; Fripp, Jurgen; Macaulay, Lance S.; Masters, Colin L.; Ames, David; Rowe, Christopher; Salvado, Olivier (2016)

Statistical shape model reconstruction with sparse anomalous deformations: Application to intervertebral disc herniation. - Neubert, Ales; Fripp, Jurgen; Engstrom, Craig; Schwarz, Daniel; Weber, Marc-André; Crozier, Stuart (Comput. Medical Imaging Graph., 2015)

Robust inverse-consistent affine CT-MR registration in MRI-assisted and MRI-alone prostate radiation therapy. - Rivest-Hénault, David; Dowson, Nicholas D. H.; Greer, Peter B.; Fripp, Jurgen; Dowling, Jason A. (Medical Image Anal., 2015)

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. - Cash, David M.; Frost, Chris; Iheme, Leonardo O.; Ünay, Devrim; Kandemir, Melek; Fripp, Jurgen; Salvado, Olivier; Bourgeat, Pierrick; Reuter, Martin; Fischl, Bruce; Lorenzi, Marco; Frisoni, Giovanni B.; et al. (NeuroImage, 2015)

On the Use of Coupled Shape Priors for Segmentation of Magnetic Resonance Images of the Knee. - Pang, Jincheng; Driban, Jeffrey B.; McAlindon, Timothy E.; Tamez-Peña, José G.; Fripp, Jurgen; Miller, Eric L. (IEEE J. Biomed. Health Informatics, 2015)

Automated Intervertebral Disc Segmentation Using Probabilistic Shape Estimation and Active Shape Models. - Neubert, Ales; Fripp, Jurgen; Chandra, Shekhar S.; Engstrom, Craig; Crozier, Stuart (2015)

Uninformative Frame Detection in Colonoscopy Through Motion, Edge and Color Features. - Armin, Mohammad Ali; Chetty, Girija; Fripp, Jurgen; Visser, Hans de; Dumas, Cédric; Fazlollahi, Amir; Grimpen, Florian; Salvado, Olivier (2015)

Heritability analysis of surface-based cortical thickness estimation on a large twin cohort. - Shen, Kai-Kai; Doré, Vincent; Rose, Stephen E.; Fripp, Jurgen; McMahon, Katie L.; Zubicaray, Greig I. de; Martin, Nicholas G.; Thompson, Paul M.; Wright, Margaret J.; Salvado, Olivier (2015)

Computational analysis of PET by AIBL (CapAIBL): a cloud-based processing pipeline for the quantification of PET images. - Bourgeat, Pierrick; Doré, Vincent; Fripp, Jurgen; Villemagne, Victor L.; Rowe, Christopher; Salvado, Olivier (2015)

Focused shape models for hip joint segmentation in 3D magnetic resonance images. - Chandra, Shekhar S.; Xia, Ying; Engstrom, Craig; Crozier, Stuart; Schwarz, Raphael; Fripp, Jurgen (Medical Image Anal., 2014)

Lesion segmentation from multimodal MRI using random forest following ischemic stroke. - Mitra, Jhimli; Bourgeat, Pierrick; Fripp, Jurgen; Ghose, Soumya; Rose, Stephen E.; Salvado, Olivier; Connelly, Alan; Campbell, Bruce; Palmer, Susan; Sharma, Gagan; Christensen, Soren; Carey, Leeanne (NeuroImage, 2014)

Investigating brain connectivity heritability in a twin study using diffusion imaging data. - Shen, Kai-Kai; Rose, Stephen E.; Fripp, Jurgen; McMahon, Katie L.; Zubicaray, Greig I. de; Martin, Nicholas G.; Thompson, Paul M.; Wright, Margaret J.; Salvado, Olivier (NeuroImage, 2014)

Fast Multiatlas Selection Using Composition of Transformations for Radiation Therapy Planning. - Rivest-Hénault, David; Ghose, Soumya; Pluim, Josien P. W.; Greer, Peter B.; Fripp, Jurgen; Dowling, Jason A. (2014)

Research and applications: MilxXplore: a web-based system to explore large imaging datasets. - Bourgeat, Pierrick; Doré, Vincent; Villemagne, Victor; Rowe, Christopher; Salvado, Olivier; Fripp, Jurgen (J. Am. Medical Informatics Assoc., 2013)

Research and applications: Three-dimensional morphological and signal intensity features for detection of intervertebral disc degeneration from magnetic resonance images. - Neubert, Ales; Fripp, Jurgen; Engstrom, Craig; Walker, Duncan; Weber, Marc-André; Schwarz, Raphael; Crozier, Stuart (J. Am. Medical Informatics Assoc., 2013)

Structure-Guided Nonrigid Registration of CT-MR Pelvis Scans with Large Deformations in MR-Based Image Guided Radiation Therapy. - Rivest-Hénault, David; Greer, Peter B.; Fripp, Jurgen; Dowling, Jason (2013)

Classification Forests and Markov Random Field to Segment Chronic Ischemic Infarcts from Multimodal MRI. - Mitra, Jhimli; Bourgeat, Pierrick; Fripp, Jurgen; Ghose, Soumya; Rose, Stephen E.; Salvado, Olivier; Connelly, Alan; Campbell, Bruce; Palmer, Susan; Sharma, Gagan; Christensen, Soren; Carey, Leeanne (2013)

Constrained reverse diffusion for thick slice interpolation of 3D volumetric MRI images. - Neubert, Ales; Salvado, Olivier; Acosta, Oscar; Bourgeat, Pierrick; Fripp, Jurgen (Comput. Medical Imaging Graph., 2012)

Detecting global and local hippocampal shape changes in Alzheimer's disease using statistical shape models. - Shen, Kai-Kai; Fripp, Jurgen; Mériaudeau, Fabrice; Chételat, Gaël; Salvado, Olivier; Bourgeat, Pierrick (NeuroImage, 2012)

Patient Specific Prostate Segmentation in 3-D Magnetic Resonance Images. - Chandra, Shekhar S.; Dowling, Jason; Shen, Kai-Kai; Raniga, Parnesh; Pluim, Josien P. W.; Greer, Peter B.; Salvado, Olivier; Fripp, Jurgen (IEEE Trans. Medical Imaging, 2012)

Morphology-Based Interslice Interpolation on Manual Segmentations of Joint Bones and Muscles in MRI. - Yang, Zhengyi; Crozier, Stuart; Engstrom, Craig; Schwarz, Raphael; Lauer, Lars; Fripp, Jurgen; Chandra, Shekhar; Xia, Ying; Neubert, Ales; Salvado, Olivier; Brancato, Tania (2012)

Combining imaging and clinical data in manifold learning: Distance-based and graph-based extensions of Laplacian Eigenmaps. - Fiot, Jean-Baptiste; Fripp, Jurgen; Cohen, Laurent D. (2012)

Unilateral hip joint segmentation with shape priors learned from missing data. - Chandra, Shekhar; Xia, Ying; Engstrom, Craig; Schwarz, Raphael; Lauer, Lars; Crozier, Stuart; Salvado, Olivier; Fripp, Jurgen (2012)

Local vs Global Descriptors of Hippocampus Shape Evolution for Alzheimer's Longitudinal Population Analysis. - Fiot, Jean-Baptiste; Risser, Laurent; Cohen, Laurent D.; Fripp, Jurgen; Vialard, François-Xavier (2012)

MR-Less Surface-Based Amyloid Estimation by Subject-Specific Atlas Selection and Bayesian Fusion. - Zhou, Luping; Salvado, Olivier; Doré, Vincent; Bourgeat, Pierrick; Raniga, Parnesh; Villemagne, Victor; Rowe, Christopher; Fripp, Jurgen (2012)

Consistent estimation of shape parameters in statistical shape model by symmetric EM algorithm. - Shen, Kai-Kai; Bourgeat, Pierrick; Fripp, Jurgen; Mériaudeau, Fabrice; Salvado, Olivier (2012)

A surface based approach for cortical thickness comparison between PiB+ and PiB- healthy control subjects. - Doré, Vincent; Bourgeat, Pierrick; Fripp, Jurgen; Acosta, Oscar; Chételat, Gaël; Szoeke, Cassandra; Ellis, Kathryn A.; Martins, Ralph N.; Villemagne, Victor; Masters, Colin L.; Ames, David; Rowe, Christopher; et al. (2012)

Symmetric diffeomorphic registration of fibre orientation distributions. - Raffelt, David; Tournier, Jacques-Donald; Fripp, Jurgen; Crozier, Stuart; Connelly, Alan; Salvado, Olivier (NeuroImage, 2011)

Automatic Segmentation of the Prostate in 3D Magnetic Resonance Images Using Case Specific Deformable Models. - Chandra, Shekhar; Dowling, Jason; Shen, Kai-Kai; Pluim, Josien P. W.; Greer, Peter B.; Salvado, Olivier; Fripp, Jurgen (2011)

Surface-Base Approach Using a Multi-scale EM-ICP Registration for Statistical Population Analysis. - Doré, Vincent; Fripp, Jurgen; Bourgeat, Pierrick; Shen, Kai-Kai; Salvado, Olivier; Acosta, Oscar (2011)

Automated 3D Segmentation of Vertebral Bodies and Intervertebral Discs from MRI. - Neubert, Ales; Fripp, Jurgen; Shen, Kai-Kai; Salvado, Olivier; Schwarz, Raphael; Lauer, Lars; Engstrom, Craig; Crozier, Stuart (2011)

Automated MR Hip Bone Segmentation. - Xia, Ying; Chandra, Shakes; Salvado, Olivier; Fripp, Jurgen; Schwarz, Raphael; Lauer, Lars; Engstrom, Craig; Crozier, Stuart (2011)

Automated 3D Segmentation and Analysis of Cotton Plants. - Paproki, Anthony; Fripp, Jurgen; Salvado, Olivier; Sirault, Xavier; Berry, Scott; Furbank, Robert (2011)

Local intensity model: An outlier detection framework with applications to white matter hyperintensity segmentation. - Raniga, Parnesh; Schmitt, Pierre; Bourgeat, Pierrick; Fripp, Jurgen; Villemagne, Victor; Rowe, Christopher; Salvado, Olivier (2011)

Fast Automatic Multi-atlas Segmentation of the Prostate from 3D MR Images. - Dowling, Jason; Fripp, Jurgen; Chandra, Shekhar; Pluim, Josien P. W.; Lambert, Jonathan; Parker, Joel; Denham, James; Greer, Peter B.; Salvado, Olivier (2011)

Detecting hippocampal shape changes in Alzheimer's disease using statistical shape models. - Shen, Kai-Kai; Bourgeat, Pierrick; Fripp, Jurgen; Mériaudeau, Fabrice; Salvado, Olivier (2011)

Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee. - Fripp, Jurgen; Crozier, Stuart; Warfield, Simon K.; Ourselin, Sébastien (IEEE Trans. Medical Imaging, 2010)

MILXView: A Medical Imaging, Analysis and Visualization Platform. - Burdett, Neil; Fripp, Jurgen; Bourgeat, Pierrick; Salvado, Olivier (2010)

3D shape context surface registration for cortical mapping. - Acosta, Oscar; Fripp, Jurgen; Rueda, Andrea; Xiao, Di; Bonner, Erik; Bourgeat, Pierrick; Salvado, Olivier (2010)

Supervised method to build an atlas database for multi-atlas segmentation-propagation. - Shen, Kai-Kai; Bourgeat, Pierrick; Fripp, Jurgen; Mériaudeau, Fabrice; Ames, David; Ellis, Kathryn A.; Masters, Colin L.; Villemagne, Victor L.; Rowe, Christopher C.; Salvado, Olivier (2010)

Automatic MRI Atlas-Based External Beam Radiation Therapy Treatment Planning for Prostate Cancer. - Dowling, Jason; Lambert, Jonathan; Parker, Joel; Greer, Peter B.; Fripp, Jurgen; Denham, James; Ourselin, Sébastien; Salvado, Olivier (2010)

Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models. - Leung, Kelvin K.; Shen, Kai-Kai; Barnes, Josephine; Ridgway, Gerard R.; Clarkson, Matthew J.; Fripp, Jurgen; Salvado, Olivier; Mériaudeau, Fabrice; Fox, Nick C.; Bourgeat, Pierrick (2010)

Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. - Acosta, Oscar; Bourgeat, Pierrick; Zuluaga, Maria A.; Fripp, Jurgen; Salvado, Olivier; Ourselin, Sébastien (Medical Image Anal., 2009)

Partial Volume Estimation of Brain Cortex from MRI Using Topology-Corrected Segmentation. - Rueda, Andrea; Acosta, Oscar; Bourgeat, Pierrick; Fripp, Jurgen; Bonner, Erik; Dowson, Nicholas D. H.; Couprie, Michel; Romero, Eduardo; Salvado, Olivier (2009)

Automated Segmentation of the Menisci from MR Images. - Fripp, Jurgen; Bourgeat, Pierrick; Engstrom, Craig; Ourselin, Sébastien; Crozier, Stuart; Salvado, Olivier (2009)

A Quantitative Comparison of Three Methods for Inflating Cortical Meshes. - Bonner, Erik; Acosta, Oscar; Fripp, Jurgen; Salvado, Olivier (2009)

Non-rigid registration of small animal skeletons from micro-CT using 3D shape context. - Xiao, Di; Bourgeat, Pierrick; Fripp, Jurgen; Tamayo, Oscar Acosta; Grégoire, Marie Claude; Salvado, Olivier (2009)

Nonrigid correction of interleaving artefacts in pelvic MRI. - Dowling, Jason; Bourgeat, Pierrick; Raffelt, David; Fripp, Jurgen; Greer, Peter B.; Patterson, Jacqueline; Denham, James; Gupta, Sanjiv; Tang, Colin; Stanwell, Peter; Ourselin, Sébastien; Salvado, Olivier (2009)

Automatic segmentation and analysis of Magnetic Resonance images of the knee bones and cartilages - Fripp, Jurgen (2008)

Appearance modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging. - Fripp, Jurgen; Bourgeat, Pierrick; Acosta, Oscar; Raniga, Parnesh; Modat, Marc; Pike, Kerryn E.; Jones, Gareth; O'Keefe, Graeme; Masters, Colin L.; Ames, David; Ellis, Kathryn A.; Maruff, Paul; et al. (NeuroImage, 2008)

Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region. - Jurcak, Valer; Fripp, Jurgen; Engstrom, Craig; Walker, Duncan; Salvado, Olivier; Ourselin, Sébastien; Crozier, Stuart (2008)

Improved cortical thickness measurement from MR images using partial volume estimation. - Bourgeat, Pierrick; Acosta, Oscar; Zuluaga, Maria A.; Fripp, Jurgen; Salvado, Olivier; Ourselin, Sébastien (2008)

Estimation of shape model parameters for 3D surfaces. - Erbou, Søren G. H.; Darkner, Sune; Fripp, Jurgen; Ourselin, Sébastien; Ersbøll, Bjarne K. (2008)

Generative atlases and atlas selection for C11-PIB PET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients. - Fripp, Jurgen; Bourgeat, Pierrick; Acosta, Oscar; Jones, Gareth; Villemagne, Victor; Ourselin, Sébastien; Rowe, Christopher; Salvado, Olivier (2008)

Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR. - Acosta, Oscar; Bourgeat, Pierrick; Fripp, Jurgen; Bonner, Erik; Ourselin, Sébastien; Salvado, Olivier (2008)

MR-Less High Dimensional Spatial Normalization of 11C PiB PET Images on a Population of Elderly, Mild Cognitive Impaired and Alzheimer Disease Patients. - Fripp, Jurgen; Bourgeat, Pierrick; Raniga, Parnesh; Acosta, Oscar; Villemagne, Victor; Jones, Gareth; O'Keefe, Graeme; Rowe, Christopher; Ourselin, Sébastien; Salvado, Olivier (2008)

MR image segmentation of the knee bone using phase information. - Bourgeat, Pierrick; Fripp, Jurgen; Stanwell, Peter; Ramadan, Saadallah; Ourselin, Sébastien (Medical Image Anal., 2007)

Automatic Segmentation of the Bones from Mr Images of The Knee. - Fripp, Jurgen; Ourselin, Sébastien; Warfield, Simon K.; Crozier, Stuart (2007)

Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. - Fripp, Jurgen; Crozier, Stuart; Warfield, Simon K.; Ourselin, Sébastien (2007)

Shape based segmentation of MRIs of the bones in the knee using phase and intensity information. - Fripp, Jurgen; Bourgeat, Pierrick; Crozier, Stuart; Ourselin, Sébastien (2007)

Automatic Segmentation of the Knee Bones using 3D Active Shape Models. - Fripp, Jurgen; Warfield, Simon K.; Crozier, Stuart; Ourselin, Sébastien (2006)

MR Image Segmentation Using Phase Information and a Novel Multiscale Scheme. - Bourgeat, Pierrick; Fripp, Jurgen; Stanwell, Peter; Ramadan, Saadallah; Ourselin, Sébastien (2006)

A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages. - Fripp, Jurgen; Crozier, Stuart; Warfield, Simon K.; Ourselin, Sébastien (2006)

3D Statistical Shape Models to Embed Spatial Relationship Information. - Fripp, Jurgen; Bourgeat, Pierrick; Mewes, Andrea J. U.; Warfield, Simon K.; Crozier, Stuart; Ourselin, Sébastien (2005)

Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. - Fripp, Jurgen; Crozier, Stuart; Warfield, Simon K.; Ourselin, Sébastien (2005)

The Use of Unwrapped Phase in MR Image Segmentation: A Preliminary Study. - Bourgeat, Pierrick; Fripp, Jurgen; Janke, Andrew L.; Galloway, Graham J.; Crozier, Stuart; Ourselin, Sébastien (2005)